This package provides an R interface to the JAGS MCMC library. JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.

This package lets you expand factors, characters and other eligible classes into dummy/indicator variables.

Ridgeline plots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in ggplot2.

The RSP markup language provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. Today's date is <%=Sys.Date()%>. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. RSP is ideal for self-contained scientific reports and R package vignettes.

This package provides kernel smoothers for univariate and multivariate data, including density functions, density derivatives, cumulative distributions, modal clustering, discriminant analysis, and two-sample hypothesis testing.

This package provides a comprehensive implementation of dynamic time warping (DTW) algorithms in R. DTW computes the optimal (least cumulative distance) alignment between points of two time series. Common DTW variants covered include local (slope) and global (window) constraints, subsequence matches, arbitrary distance definitions, normalizations, minimum variance matching, and so on.

This package provides data structures and basic operations for ordinary sets, generalizations such as fuzzy sets, multisets, and fuzzy multisets, customizable sets, and intervals.

This package implements numerically-stable Gauss-Hermite quadrature rules and utility functions for adaptive GH quadrature.

This package provides a simple interface to lat/long projection and datum transformation of the PROJ.4 cartographic projections library. It allows transformation of geographic coordinates from one projection and/or datum to another.

This package embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine is included.

Access to selected functions found in liblwgeom, the light-weight geometry library used by PostGIS.

This package simulates the process of installing a package and then attaching it. This is a key part of the devtools package as it allows you to rapidly iterate while developing a package.

This is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), the iterated GMM and continuous updated estimator (Hansen, Eaton and Yaron 1996; <doi:10.2307/1392442>) and several methods that belong to the Generalized Empirical Likelihood family of estimators (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>).

This package implements synchronization between R processes (spawned by using the parallel package for instance) using file locks. It supports both exclusive and shared locking.

spacetime provides classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal matching or aggregation, retrieving coordinates, print, summary, etc.

This tool provides an algorithm to identify rare cell types in single-cell data. It also identifies abundant cell types. The method is based on transcript counts obtained with unique molecular identifies.

In Shiny apps, it is sometimes useful to store information on a particular item in a tooltip. Prompter allows you to easily create such tooltips, using Hint.css.

A collection of various oversampling techniques developed from SMOTE is provided. SMOTE is an oversampling technique which synthesizes a new minority instance between a pair of one minority instance and one of its K nearest neighbor.

This is a package for stubbing and setting expectations on HTTP requests. It includes tools for stubbing HTTP requests, including expected request conditions and response conditions. You can match on HTTP method, query parameters, request body, headers and more. It can be used for unit tests or outside of a testing context.

Sankey plots are a type of diagram that is convenient to illustrate how flow of information, resources etc. separates and joins, much like observing how rivers split and merge. For example, they can be used to compare different clusterings. This package provides an implementation of Sankey plots for R.

This package provides functions to access Twitter's filter, sample, and user streams, and to parse the output into data frames.

This package provides tools to convert plot function calls (using expression or formula) to grob or ggplot objects that are compatible with the grid and ggplot2 environment. With this package, we are able to e.g. use cowplot to align plots produced by base graphics, grid, lattice, vcd etc. by converting them to ggplot objects.

This package contains all the datasets for the spatstat package.

This package provides Ace editor bindings to enable a rich text editing environment within Shiny.