_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


googletest 1.7.0
Channel: gn-bioinformatics
Location: gn/packages/file-systems.scm (gn packages file-systems)
Home page: https://github.com/google/googletest/
Licenses: Modified BSD
Build system: cmake
Synopsis: Test discovery and XUnit test framework
Description:

Google Test features an XUnit test framework, automated test discovery, death tests, assertions, parameterized tests and XML test report generation.

moosefs 4.58.3
Dependencies: autoconf@2.69 automake@1.17 fuse@3.10.5 libpcap@1.10.1 zlib@1.3.1 python@3.11.14 libtool@2.4.7
Channel: gn-bioinformatics
Location: gn/packages/file-systems.scm (gn packages file-systems)
Home page: https://moosefs.com/
Licenses: ASL 2.0 GPL 2+
Build system: gnu
Synopsis: Distributed, scalable, fault-tolerant, highly available file system
Description:

MooseFS is a Petabyte Open Source Network Distributed File System. It is easy to deploy and maintain, highly reliable, fault tolerant, highly performing, easily scalable and POSIX compliant.

lizardfs 3.12.0
Dependencies: bdb@6.2.32 boost@1.89.0 fuse@2.9.9 linux-pam@1.5.2 python2@2.7.18 spdlog@1.13.0 zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/file-systems.scm (gn packages file-systems)
Home page: https://lizardfs.com/
Licenses: ASL 2.0 GPL 3
Build system: cmake
Synopsis: Distributed, scalable, fault-tolerant, highly available file system
Description:

LizardFS makes files secure by keeping all the data in many replicas spread over all available servers. It can be used also to build affordable storage because it runs without any problems on commodity hardware. Disk and server failures are handled transparently and most of all without any downtime or loss of data. If storage requirements grow, it's possible to scale an existing LizardFS installation just by adding new servers at any time, without any downtime. The system will automatically move data across to the newly added servers, as it continuously takes care of balancing disk usage across all connected nodes.

verilator 4.110
Dependencies: perl@5.36.0 python@3.11.14 systemc@3.0.2
Channel: gn-bioinformatics
Location: gn/packages/fpga.scm (gn packages fpga)
Home page: https://www.veripool.org/verilator/
Licenses: LGPL 3
Build system: gnu
Synopsis: Verilog/SystemVerilog simulator
Description:

Verilator transforms the specified Verilog or SystemVerilog code by reading it, performing lint checks, and optionally inserting assertion checks and coverage-analysis points. It outputs single- or multi-threaded .cpp and .h files.

gemma-gn2 0.98.5-8cd4cdb
Dependencies: catch2@2.13.8 gsl@2.8 shunit2-old@2.0.4-60dd60b openblas@0.3.30 zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/gemma.scm (gn packages gemma)
Home page: https://github.com/genetics-statistics/GEMMA
Licenses: GPL 3
Build system: gnu
Synopsis: Tool for genome-wide efficient mixed model association
Description:

Genome-wide Efficient Mixed Model Association (GEMMA) provides a standard linear mixed model resolver with application in genome-wide association studies (GWAS).

gemma-gn2-git 0.98.5-8cd4cdb
Dependencies: gsl@2.8 shunit2-old@2.0.4-60dd60b openblas@0.3.30 zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/gemma.scm (gn packages gemma)
Home page: https://github.com/genetics-statistics/GEMMA
Licenses: GPL 3
Build system: gnu
Synopsis: Tool for genome-wide efficient mixed model association
Description:

Genome-wide Efficient Mixed Model Association (GEMMA) provides a standard linear mixed model resolver with application in genome-wide association studies (GWAS).

gemma-wrapper 0.99.6
Dependencies: gemma-gn2@0.98.5-8cd4cdb parallel@20251122
Propagated dependencies: coreutils@9.1
Channel: gn-bioinformatics
Location: gn/packages/gemma.scm (gn packages gemma)
Home page: https://rubygems.org/gems/bio-gemma-wrapper
Licenses: GPL 3
Build system: ruby
Synopsis: Gemma wrapper for LOCO and caching
Description:

Gemma wrapper

gitea 1.15.11
Dependencies: bash-minimal@5.2.37 git@2.52.0
Channel: gn-bioinformatics
Location: gn/packages/gitea.scm (gn packages gitea)
Home page: https://gitea.io/
Licenses: Expat
Build system: go
Synopsis: Self-hosted git service
Description:

Gitea is an open-source forge software package for hosting software development version control using Git as well as other collaborative features like bug tracking, wikis and code review.

globus-cli 3.25.0
Propagated dependencies: python-click@8.1.8 python-cryptography@44.0.0 python-globus-sdk@3.37.0 python-jmespath@1.0.1 python-packaging@25.0 python-requests@2.32.5 python-typing-extensions@4.15.0
Channel: gn-bioinformatics
Location: gn/packages/globus.scm (gn packages globus)
Home page: https://docs.globus.org/cli
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Globus CLI
Description:

globus-cli provides a command-line interface to Globus APIs.

python-globus-sdk 3.37.0
Propagated dependencies: python-cryptography@44.0.0 python-pyjwt@2.10.1 python-requests@2.32.5 python-typing-extensions@4.15.0
Channel: gn-bioinformatics
Location: gn/packages/globus.scm (gn packages globus)
Home page: https://github.com/globus/globus-sdk-python
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Globus SDK for Python
Description:

python-globus-sdk provides a convenient Pythonic interface to Globus APIs.

python-click-type-test 0.0.7
Propagated dependencies: python-click@8.1.8
Channel: gn-bioinformatics
Location: gn/packages/globus.scm (gn packages globus)
Home page: https://github.com/sirosen/click-type-test
Licenses: Expat
Build system: pyproject
Synopsis: Test that type annotations match click parameter types
Description:

python-click-type-test allows you to test that your click options and arguments match your type annotations.

gn-proxy 0.2.1-gn2-866bc43
Dependencies: racket-minimal@8.18
Channel: gn-bioinformatics
Location: gn/packages/gn-proxy.scm (gn packages gn-proxy)
Home page: https://github.com/genenetwork/gn-proxy
Licenses: AGPL 3
Build system: gnu
Synopsis: GN proxy and access control
Description:

GeneNetwork proxy manages authorization/access control

gnulib 0.1-2877.de255f8
Channel: gn-bioinformatics
Location: gn/packages/gnulib.scm (gn packages gnulib)
Home page: https://www.gnu.org/software/gnulib/
Licenses: GPL 2+ LGPL 2.0+
Build system: gnu
Synopsis: Common GNU code
Description:

Gnulib is a central location for common GNU code, intended to be shared among GNU packages.

gtest 1.7.0.1.13206d6f53aaff844f2d3595a01ac83a29e383db
Channel: gn-bioinformatics
Location: gn/packages/gtest.scm (gn packages gtest)
Home page:
Licenses: Expat
Build system: cmake
Synopsis:
Description:
guile3-dbd-mysql 2.1.8
Dependencies: mariadb@10.11.14 mariadb@10.11.14 zlib@1.3.1 libltdl@2.4.7
Channel: gn-bioinformatics
Location: gn/packages/guile.scm (gn packages guile)
Home page: https://github.com/opencog/guile-dbi
Licenses: GPL 2+
Build system: gnu
Synopsis: Guile DBI driver for MySQL
Description:

guile-dbi is a library for Guile that provides a convenient interface to SQL databases. This package implements the interface for MySQL.

guile-sheepdog 0.0.0
Propagated dependencies: bash-minimal@5.2.37 guile@3.0.9 guile-uuid@0.9.0 guile-hashing@1.2.0 guile-fibers@1.4.2 guile-json@4.7.3 guile-gcrypt@0.5.0 guile-gnutls@5.0.1 guile-redis@2.2.0
Channel: gn-bioinformatics
Location: gn/packages/guile.scm (gn packages guile)
Home page: https://github.com/BonfaceKilz/guile-sheepdog.git
Licenses: GPL 3
Build system: guile
Synopsis: Genenetwork monitoring tool
Description:

Genenetwork monitoring tool

guile3-dbi 2.1.8
Dependencies: libltdl@2.4.7
Channel: gn-bioinformatics
Location: gn/packages/guile.scm (gn packages guile)
Home page: https://github.com/opencog/guile-dbi
Licenses: GPL 2+
Build system: gnu
Synopsis: Guile database abstraction layer
Description:

guile-dbi is a library for Guile that provides a convenient interface to SQL databases. Database programming with guile-dbi is generic in that the same programming interface is presented regardless of which database system is used. It currently supports MySQL, Postgres and SQLite3.

helm 3.0.2
Channel: gn-bioinformatics
Location: gn/packages/helm.scm (gn packages helm)
Home page: https://helm.sh/
Licenses: ASL 2.0
Build system: trivial
Synopsis: Kubernetes Package Manager
Description:

Helm is a tool for managing Kubernetes charts. Charts are packages of pre-configured Kubernetes resources. Use Helm to:

  1. Find and use popular software packaged as Helm charts to run in Kubernetes

  2. Share your own applications as Helm charts

  3. Create reproducible builds of your Kubernetes applications

  4. Intelligently manage your Kubernetes manifest files

  5. Manage releases of Helm packages

hyphy 2.5.0
Dependencies: curl@8.6.0 fftw-openmpi@3.3.10 openmpi@4.1.6 openssl@3.0.8 python2@2.7.18
Channel: gn-bioinformatics
Location: gn/packages/hyphy.scm (gn packages hyphy)
Home page: http://hyphy.org
Licenses: Expat
Build system: cmake
Synopsis: hyphy: an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning.
Description:

HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface (MPI)) and it can be compiled as a shared library and called from other programming environments such as Python and R.

rtg-tools 3.11
Dependencies: bash-minimal@5.2.37 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-lang@2.6 java-snappy@1.1.7.5
Channel: gn-bioinformatics
Location: gn/packages/java.scm (gn packages java)
Home page: https://github.com/RealTimeGenomics/rtg-tools/
Licenses: FreeBSD
Build system: ant
Synopsis: Utilities for accurate VCF comparison and manipulation
Description:

RTG Tools is a subset of RTG Core that includes several useful utilities for dealing with VCF files and sequence data. Probably the most interesting is the vcfeval command which performs sophisticated comparison of VCF files.

commons-vfs 2.0
Channel: gn-bioinformatics
Location: gn/packages/java.scm (gn packages java)
Home page: https://commons.apache.org/proper/commons-vfs/
Licenses: ASL 2.0
Build system: ant
Synopsis: Commons Virtual File System API for Java
Description:

Commons VFS provides a single API for accessing various different file systems. It presents a uniform view of the files from various different sources, such as the files on local disk, on an HTTP server, or inside a Zip archive.

jakarta-oro 2.0.8
Channel: gn-bioinformatics
Location: gn/packages/java.scm (gn packages java)
Home page: http://jakarta.apache.org/oro/
Licenses: ASL 1.1
Build system: ant
Synopsis: Set of text-processing Java classes
Description:

The Jakarta-ORO Java classes are a set of text-processing Java classes that provide Perl5 compatible regular expressions, AWK-like regular expressions, glob expressions, and utility classes for performing substitutions, splits, filtering filenames, etc.

jsch 0.1.53
Channel: gn-bioinformatics
Location: gn/packages/java.scm (gn packages java)
Home page: http://www.jcraft.com/jsch/
Licenses: Modified BSD
Build system: ant
Synopsis: JSch is a pure Java implementation of SSH2
Description:

JSch is a pure Java implementation of SSH2. JSch allows you to connect to an sshd server and use port forwarding, X11 forwarding, file transfer, etc., and you can integrate its functionality into your own Java programs.

Total packages: 69236