This package provides alternatives to the normal adjusted R-squared estimator for the estimation of the multiple squared correlation in regression models, as fitted by the lm() function. The alternative estimators are described in Karch (2020) <DOI:10.1525/collabra.343>.

The main application concerns to a new robust optimization package with two major contributions. The first contribution refers to the assessment of the adequacy of probabilistic models through a combination of several statistics, which measure the relative quality of statistical models for a given data set. The second one provides a general purpose optimization method based on meta-heuristics functions for maximizing or minimizing an arbitrary objective function.

With the functions in this package you can check the validity of the Greek Tax Identification Number (AFM) and the Greek Personal Number (PA) <https://pa.gov.gr>. The PA is a new universal ID for Greek citizens across all public services and it is to replace older numbers issued by various Greek state agencies. Its format is a 12-character ID consisting of three alphanumeric characters followed by the nine numerical digits of the AFM.

The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius. In addition to this, we also provide a simple way (Jones and Hulme, 1996) to grid the irregularly-spaced data points onto regular latitude-longitude grids by averaging all stations in grid-boxes.

Implementation of the Artificial Hydrocarbon Networks for data modeling.

Functionality to allow users to easily colour plots with the colour palettes of various academic institutions.

Retrieves open source airport data and provides tools to look up information, translate names into codes and vice-verse, as well as some basic calculation functions for measuring distances. Data is licensed under the Open Database License.

Parentage assignment package. Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion. The main functions of this package are the function APIS_2n(), APIS_3n() and launch_APIShiny(), which perform parentage assignment.

Automate the modelling of age-structured population data using survey data, grid population estimates and urban-rural extents.

Data from the anxiety and confinement study from Alvarado-Aravena et al. (2022) <doi:10.3390/bs12100398>.

Adjusts output of cranlogs package to account for CRAN'-wide daily automated downloads and re-downloads caused by package updates.

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.

Data from Gardner and Janson art history textbooks about both the artists featured in these books as well as their works. See Helen Gardner ("Art through the ages; an introduction to its history and significance," 1926, <https://find.library.duke.edu/catalog/DUKE000104481>. Helen Gardner, revised by Horst de la Croix and Richard G. Tansey ("Gardnerâ s Art through the ages," 1980, ISBN: 0155037587). Fred S. Kleiner ("Gardnerâ s art through the ages: a global history," 2020, ISBN: 9781337630702). Horst de la Croix and Richard G. Tansey ("Gardner's art through the ages," 1986, ISBN: 0155037633). Helen Gardner ("Art through the ages; an introduction to its history and significance," 1936, <https://find.library.duke.edu/catalog/DUKE001199463>). Helen Gardner ("Art through the ages," 1948, <https://find.library.duke.edu/catalog/DUKE001199466>). Helen Gardner, revised under the editorship of Sumner M. Crosby ("Art through the ages," 1959, <https://find.library.duke.edu/catalog/DUKE001199469>). Helen Gardner, revised by Horst de la Croix and Richard G. Tansey ("Gardnerâ s Art through the ages," 1975, ISBN: 0155037560). Fred S. Kleiner ("Gardnerâ s Art through the ages: a global history," 2013, ISBN: 9780495915423. Fred S. Kleiner, Christin J. Mamiya, Richard G. Tansey ("Gardnerâ s art through the ages," 2001, ISBN: 0155083155). Fred S. Kleiner ("Gardnerâ s Art through the ages: a global history," 2016, ISBN: 9781285837840). Fred S. Kleiner, Christin J. Mamiya ("Gardnerâ s art through the ages," 2005, ISBN: 0534640958). Helen Gardner, revised by Horst de la Croix and Richard G. Tansey ("Gardnerâ s Art through the ages," 1970, ISBN: 0155037528). Helen Gardner, Richard G. Tansey, Fred S. Kleiner ("Gardnerâ s Art through the ages," 1996, ISBN: 0155011413). Helen Gardner, Horst de la Croix, Richard G. Tansey, Diane Kirkpatrick ("Gardnerâ s Art through the ages," 1991, ISBN: 0155037692). Helen Gardner, Fred S. Kleiner ("Gardnerâ s Art through the ages: a global history," 2009, ISBN: 9780495093077). Davies, Penelope J.E., Walter B. Denny, Frima Fox Hofrichter, Joseph F. Jacobs, Ann S. Roberts, David L. Simon ("Jansonâ s history of art: the western tradition," 2007, ISBN: 0131934554). Davies, Penelope J.E., Walter B. Denny, Frima Fox Hofrichter, Joseph F. Jacobs, Ann S. Roberts, David L. Simon ("Jansonâ s history of art: the western tradition," 2011, ISBN: 9780205685172). H. W. Janson, Anthony F. Janson ("History of Art," 2001, ISBN: 0810934469). H. W. Janson, revised and expanded by Anthony F. Janson ("History of art," 1986, ISBN: 013389388). H. W. Janson, Dora Jane Janson ("History of art: a survey of the major visual arts from the dawn of history to present day," 1977, ISBN: 0810910527). H. W. Janson, Dora Jane Janson ("History of art: a survey of the major visual arts from the dawn of history to present day," 1969, <https://find.library.duke.edu/catalog/DUKE000005734>). H. W. Janson, Dora Jane Janson ("History of art: a survey of the major visual arts from the dawn of history to present day," 1963, <https://find.library.duke.edu/catalog/DUKE001521852>). H. W. Janson, revised and expanded by Anthony F. Janson ("History of art," 1991, ISBN: 0810934019). H. W. Janson, revised and expanded by Anthony F. Janson ("History of art," 1995, ISBN: 0810934213).

This package provides functions to calculate Gray Level Co-occurrence Matrix(GLCM), RGB-based Vegetative Index(RGB VI) and Normalized Difference Vegetation Index(NDVI) family image features. GLCM calculations are based on Haralick (1973) <doi:10.1109/TSMC.1973.4309314>.

An interface for performing all stages of ADMIXTOOLS analyses (<https://github.com/dreichlab/admixtools>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run ADMIXTOOLS programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the EIGENSTRAT format is also provided.

Existing adaptive design methods in clinical trials. The package includes power, stopping boundaries (sample size) calculation functions for two-group group sequential designs, adaptive design with coprimary endpoints, biomarker-informed adaptive design, etc.

Streamline use of the All of Us Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the All of Us database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of All of Us tools and allowing for cohort creation via Atlas'. Improve reproducible and transparent research using All of Us'.

Estimate the Å estákâ Berggren kinetic model (degradation model) from experimental data. A closed-form (analytic) solution to the degradation model is implemented as a non-linear fit, allowing for the extrapolation of the degradation of a drug product - both in time and temperature. Parametric bootstrap, with kinetic parameters drawn from the multivariate t-distribution, and analytical formulae (the delta method) are available options to calculate the confidence and prediction intervals. The results (modelling, extrapolations and statistical intervals) can be visualised with multiple plots. The examples illustrate the accelerated stability modelling in drugs and vaccines development.

The Australian Statistical Geography Standard ('ASGS') is a set of shapefiles by the Australian Bureau of Statistics. This package provides an interface to those shapefiles, as well as methods for converting coordinates to shapefiles.

This package provides a collection of tools for the analysis of animal movements.

Fits a linear-binomial model using a modified Newton-type algorithm for solving the maximum likelihood estimation problem under linear box constraints. Similar methods are described in Wagenpfeil, Schöpe and Bekhit (2025, ISBN:9783111341972) "Estimation of adjusted relative risks in log-binomial regression using the BSW algorithm". In: Mau, Mukhin, Wang and Xu (Eds.), Biokybernetika. De Gruyter, Berlin, pp. 665â 676.

This package provides a toolkit to predict antimicrobial peptides from protein sequences on a genome-wide scale. It incorporates two support vector machine models ("precursor" and "mature") trained on publicly available antimicrobial peptide data using calculated physico-chemical and compositional sequence properties described in Meher et al. (2017) <doi:10.1038/srep42362>. In order to support genome-wide analyses, these models are designed to accept any type of protein as input and calculation of compositional properties has been optimised for high-throughput use. For best results it is important to select the model that accurately represents your sequence type: for full length proteins, it is recommended to use the default "precursor" model. The alternative, "mature", model is best suited for mature peptide sequences that represent the final antimicrobial peptide sequence after post-translational processing. For details see Fingerhut et al. (2020) <doi:10.1093/bioinformatics/btaa653>. The ampir package is also available via a Shiny based GUI at <https://ampir.marine-omics.net/>.

The aligned rank transform for nonparametric factorial ANOVAs as described by Wobbrock, Findlater, Gergle, and Higgins (2011) <doi:10.1145/1978942.1978963>. Also supports aligned rank transform contrasts as described by Elkin, Kay, Higgins, and Wobbrock (2021) <doi:10.1145/3472749.3474784>.

Acknowledge all contributors to a project via a single function call. The function appends to a README or other specified file(s) a table with names of all individuals who contributed via code or repository issues. The package also includes several additional functions to extract and quantify contributions to any repository.