_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


nginx-gn-config 0.0.1-1.e2ac61b
Propagated dependencies: nginx@1.28.0
Channel: gn-bioinformatics
Location: gn/deploy/machines.scm (gn deploy machines)
Home page: http://git.genenetwork.org/pjotrp/guix-bioinformatics
Licenses: Expat
Synopsis: Nginx configuration
Description:

None.

afnumpy rel1-c5594c1
Channel: gn-bioinformatics
Location: gn/packages/afnumpy.scm (gn packages afnumpy)
Home page: https://github.com/FilipeMaia/afnumpy
Licenses: GPL 2
Synopsis: Numerical library array processing of numbers, strings, records and objects
Description:

A GPGPU-accelerated drop-in of python's numpy

clFFT 2.12.2
Dependencies: ocl-icd@2.3.2 opencl-headers@2024.10.24
Channel: gn-bioinformatics
Location: gn/packages/arrayfire.scm (gn packages arrayfire)
Home page: https://github.com/clMathLibraries/clFFT/
Licenses: ASL 2.0
Synopsis: Library containing FFT functions written in OpenCL
Description:

clFFT is a software library containing FFT functions written in OpenCL. In addition to GPU devices, the library also supports running on CPU devices to facilitate debugging and heterogeneous programming.

arrayfire 3.3.2
Dependencies: boost@1.83.0 clBLAS@2.12 clFFT@2.12.2 fftw-openmpi@3.3.10 fftwf@3.3.10 ocl-icd@2.3.2 openblas@0.3.30 opencl-headers@2024.10.24
Channel: gn-bioinformatics
Location: gn/packages/arrayfire.scm (gn packages arrayfire)
Home page: https://arrayfire.com/
Licenses: Modified BSD CC0
Synopsis: High performance library for parallel computing
Description:

ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming simple.

compute 0.5
Channel: gn-bioinformatics
Location: gn/packages/arrayfire.scm (gn packages arrayfire)
Home page: http://boostorg.github.io/compute/
Licenses: Boost 1.0
Synopsis: C++ GPU Computing Library for OpenCL
Description:

Boost.Compute is a GPU/parallel-computing library for C++ based on OpenCL. The core library is a thin C++ wrapper over the OpenCL API and provides access to compute devices, contexts, command queues and memory buffers.

clBLAS 2.12
Dependencies: boost@1.83.0 ocl-icd@2.3.2
Channel: gn-bioinformatics
Location: gn/packages/arrayfire.scm (gn packages arrayfire)
Home page: https://github.com/clMathLibraries/clBLAS
Licenses: ASL 2.0
Synopsis: Library containing BLAS functions written in OpenCL
Description:

The primary goal of clBLAS is to make it easier for developers to utilize the inherent performance and power efficiency benefits of heterogeneous computing. clBLAS interfaces do not hide nor wrap OpenCL interfaces, but rather leaves OpenCL state management to the control of the user to allow for maximum performance and flexibility. The clBLAS library does generate and enqueue optimized OpenCL kernels, relieving the user from the task of writing, optimizing and maintaining kernel code themselves.

python-jgart-giturlparse 20211107-0.719f4c8
Channel: gn-bioinformatics
Location: gn/packages/binderlite.scm (gn packages binderlite)
Home page: https://github.com/nephila/giturlparse
Licenses: ASL 2.0
Synopsis: Git URL parsing module
Description:

Provides an updated clean_data function for the github platform. See https://github.com/nephila/giturlparse/pull/41. binderlite will be rewritten in Common Lisp. If we stay with Python I recommend switching this library out for python-furl or similar.

r-bracer 1.2.1
Propagated dependencies: r-stringr@1.5.1
Channel: gn-bioinformatics
Location: gn/packages/cran.scm (gn packages cran)
Home page: https://trevorldavis.com/R/bracer/
Licenses: Expat
Synopsis: Brace Expansions
Description:

Performs brace expansions on strings. Made popular by Unix shells, brace expansion allows users to concisely generate certain character vectors by taking a single string and (recursively) expanding the comma-separated lists and double-period-separated integer and character sequences enclosed within braces in that string. The double-period-separated numeric integer expansion also supports padding the resulting numbers with zeros.

r-tictoc 1.0
Channel: gn-bioinformatics
Location: gn/packages/cran.scm (gn packages cran)
Home page: http://github.com/collectivemedia/tictoc
Licenses: ASL 2.0
Synopsis: Functions for timing R scripts
Description:

This package provides the timing functions tic and toc that can be nested. One can record all timings while a complex script is running, and examine the values later. It is also possible to instrument the timing call with custom callbacks. In addition, this package provides class 'Stack', implemented as a vector, and class 'List', implemented as a list, both of whic support operations 'push', 'pop', 'first', 'last' and 'clear'.

sdsl-lite-hwcaps 2.1.1
Propagated dependencies: libdivsufsort@2.0.1
Channel: gn-bioinformatics
Location: gn/packages/datastructures.scm (gn packages datastructures)
Home page: https://github.com/simongog/sdsl-lite
Licenses: GPL 3+
Synopsis: Succinct data structure library
Description:

The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. In total, the library contains the highlights of 40 research publications. Succinct data structures can represent an object (such as a bitvector or a tree) in space close to the information-theoretic lower bound of the object while supporting operations of the original object efficiently. The theoretical time complexity of an operation performed on the classical data structure and the equivalent succinct data structure are (most of the time) identical.

ldc 1.26.0
Dependencies: libconfig@1.7.3 libedit@20191231-3.1 tzdata@2025a zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/dlang.scm (gn packages dlang)
Home page: http://wiki.dlang.org/LDC
Licenses: Modified BSD GPL 2+ Boost 1.0
Synopsis: LLVM-based compiler for the D programming language
Description:

LDC is an LLVM compiler for the D programming language. It is based on the latest DMD compiler that was written in C and is used for bootstrapping more recent compilers written in D.

elixir 1.5.1
Propagated dependencies: erlang@27.3.4.3 git@2.51.0 glibc-utf8-locales@2.41
Channel: gn-bioinformatics
Location: gn/packages/elixir.scm (gn packages elixir)
Home page: http://elixir-lang.org/
Licenses: ASL 2.0
Synopsis: Elixir programming language
Description:

Elixir is a dynamic, functional language used to build scalable and maintainable applications. Elixir leverages the Erlang VM, known for running low-latency, distributed and fault-tolerant systems, while also being successfully used in web development and the embedded software domain.

emacs-trident-mode 0.1-0.109a1bc
Propagated dependencies: emacs-skewer-mode@1.8.0 emacs-dash@2.20.0 emacs-slime@2.31
Channel: gn-bioinformatics
Location: gn/packages/emacs-xyz.scm (gn packages emacs-xyz)
Home page: https://github.com/johnmastro/trident-mode.el
Licenses: Unlicense
Synopsis: Emacs minor mode for live Parenscript interaction
Description:

emacs-trident-mode is an emacs minor mode and collection of commands for working with Parenscript code in SLIME and sending it to the browser via Skewer. The goal is to create an environment for hacking Parenscript which fits as naturally as possible into the Lisp style of interactive development.

googletest 1.7.0
Channel: gn-bioinformatics
Location: gn/packages/file-systems.scm (gn packages file-systems)
Home page: https://github.com/google/googletest/
Licenses: Modified BSD
Synopsis: Test discovery and XUnit test framework
Description:

Google Test features an XUnit test framework, automated test discovery, death tests, assertions, parameterized tests and XML test report generation.

lizardfs 3.12.0
Dependencies: bdb@6.2.32 boost@1.83.0 fuse@2.9.9 linux-pam@1.5.2 python2@2.7.18 spdlog@1.13.0 zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/file-systems.scm (gn packages file-systems)
Home page: https://lizardfs.com/
Licenses: ASL 2.0 GPL 3
Synopsis: Distributed, scalable, fault-tolerant, highly available file system
Description:

LizardFS makes files secure by keeping all the data in many replicas spread over all available servers. It can be used also to build affordable storage because it runs without any problems on commodity hardware. Disk and server failures are handled transparently and most of all without any downtime or loss of data. If storage requirements grow, it's possible to scale an existing LizardFS installation just by adding new servers at any time, without any downtime. The system will automatically move data across to the newly added servers, as it continuously takes care of balancing disk usage across all connected nodes.

verilator 4.110
Dependencies: perl@5.36.0 python@3.11.11 systemc@3.0.1
Channel: gn-bioinformatics
Location: gn/packages/fpga.scm (gn packages fpga)
Home page: https://www.veripool.org/verilator/
Licenses: LGPL 3
Synopsis: Verilog/SystemVerilog simulator
Description:

Verilator transforms the specified Verilog or SystemVerilog code by reading it, performing lint checks, and optionally inserting assertion checks and coverage-analysis points. It outputs single- or multi-threaded .cpp and .h files.

gemma-gn2-git 0.98.5-8cd4cdb
Dependencies: gsl@2.8 shunit2-old@2.0.4-60dd60b openblas@0.3.30 zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/gemma.scm (gn packages gemma)
Home page: https://github.com/genetics-statistics/GEMMA
Licenses: GPL 3
Synopsis: Tool for genome-wide efficient mixed model association
Description:

Genome-wide Efficient Mixed Model Association (GEMMA) provides a standard linear mixed model resolver with application in genome-wide association studies (GWAS).

gemma-gn2 0.98.5-8cd4cdb
Dependencies: catch2@2.13.8 gsl@2.8 shunit2-old@2.0.4-60dd60b openblas@0.3.30 zlib@1.3.1
Channel: gn-bioinformatics
Location: gn/packages/gemma.scm (gn packages gemma)
Home page: https://github.com/genetics-statistics/GEMMA
Licenses: GPL 3
Synopsis: Tool for genome-wide efficient mixed model association
Description:

Genome-wide Efficient Mixed Model Association (GEMMA) provides a standard linear mixed model resolver with application in genome-wide association studies (GWAS).

gemma-wrapper 0.99.6
Dependencies: gemma-gn2@0.98.5-8cd4cdb parallel@20250922
Propagated dependencies: coreutils@9.1
Channel: gn-bioinformatics
Location: gn/packages/gemma.scm (gn packages gemma)
Home page: https://rubygems.org/gems/bio-gemma-wrapper
Licenses: GPL 3
Synopsis: Gemma wrapper for LOCO and caching
Description:

Gemma wrapper

gitea 1.15.11
Dependencies: bash-minimal@5.2.37 git@2.51.0
Channel: gn-bioinformatics
Location: gn/packages/gitea.scm (gn packages gitea)
Home page: https://gitea.io/
Licenses: Expat
Synopsis: Self-hosted git service
Description:

Gitea is an open-source forge software package for hosting software development version control using Git as well as other collaborative features like bug tracking, wikis and code review.

globus-cli 3.25.0
Propagated dependencies: python-click@8.1.8 python-cryptography@44.0.0 python-globus-sdk@3.37.0 python-jmespath@1.0.1 python-packaging@25.0 python-requests@2.32.5 python-typing-extensions@4.15.0
Channel: gn-bioinformatics
Location: gn/packages/globus.scm (gn packages globus)
Home page: https://docs.globus.org/cli
Licenses: ASL 2.0
Synopsis: Globus CLI
Description:

globus-cli provides a command-line interface to Globus APIs.

python-click-type-test 0.0.7
Propagated dependencies: python-click@8.1.8
Channel: gn-bioinformatics
Location: gn/packages/globus.scm (gn packages globus)
Home page: https://github.com/sirosen/click-type-test
Licenses: Expat
Synopsis: Test that type annotations match click parameter types
Description:

python-click-type-test allows you to test that your click options and arguments match your type annotations.

python-globus-sdk 3.37.0
Propagated dependencies: python-cryptography@44.0.0 python-pyjwt@2.10.1 python-requests@2.32.5 python-typing-extensions@4.15.0
Channel: gn-bioinformatics
Location: gn/packages/globus.scm (gn packages globus)
Home page: https://github.com/globus/globus-sdk-python
Licenses: ASL 2.0
Synopsis: Globus SDK for Python
Description:

python-globus-sdk provides a convenient Pythonic interface to Globus APIs.

Total results: 577