_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


ocaml4.07-lwt 5.5.0
Dependencies: glib@2.83.3
Propagated dependencies: ocaml4.07-mmap@1.2.0 ocaml4.07-ocplib-endian@1.2 ocaml4.07-result@1.5 ocaml4.07-seq@0.1 libev@4.33
Channel: gn-bioinformatics
Location: gn/packages/ocaml.scm (gn packages ocaml)
Home page: https://github.com/ocsigen/lwt
Licenses: LGPL 2.1
Synopsis: Cooperative threads and I/O in monadic style
Description:

Lwt provides typed, composable cooperative threads. These make it easy to run normally-blocking I/O operations concurrently in a single process. Also, in many cases, Lwt threads can interact without the need for locks or other synchronization primitives.

ocaml4.07-gsl 1.19.3
Dependencies: gsl@2.8
Channel: gn-bioinformatics
Location: gn/packages/ocaml.scm (gn packages ocaml)
Home page: https://mmottl.github.io/gsl-ocaml
Licenses: GPL 3+
Synopsis: Bindings to the GNU Scientific Library
Description:

GSL-OCaml is an interface to the GNU scientific library (GSL) for the OCaml language.

openfyba 4.1.1
Dependencies: zip@3.0 autoconf@2.69 automake@1.17 libtool@2.4.7 libgcrypt@1.11.0
Channel: gn-bioinformatics
Location: gn/packages/openfyba.scm (gn packages openfyba)
Home page: http://labs.kartverket.no/sos/
Licenses: GPL 2
Synopsis: source code release of the FYBA library
Description:

OpenFYBA is the source code release of the FYBA library.

logtodo 1.0.5-acda8f2
Propagated dependencies: perl-time-parsedate@2015.103
Channel: gn-bioinformatics
Location: gn/packages/perl.scm (gn packages perl)
Home page: https://gitlab.com/pjotrp/logtodo
Licenses: GPL 2+
Synopsis: Pjotr's time logger
Description:

None

perl-time-parsedate 2015.103
Channel: gn-bioinformatics
Location: gn/packages/perl.scm (gn packages perl)
Home page: http://search.cpan.org/dist/Time-ParseDate
Licenses:
Synopsis: Parse and format time values
Description:

ParseDate

r-intermediate 0.2-4
Dependencies: r-ggplot2@3.5.2 r-magrittr@2.0.3 r-plotly@4.10.4 r-htmlwidgets@1.6.4 r-testthat@3.2.3
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: https://github.com/simecek/intermediate
Licenses: GPL 3
Synopsis: R/intermediate
Description:

R package for eQTl/pQTL mediation analysis.

r-fastmatch 1.1-0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: http://www.rforge.net/fastmatch
Licenses: GPL 2
Synopsis: Fast match() function
Description:

Package providing a fast match() replacement for cases that require repeated look-ups. It is slightly faster that R's built-in match() function on first match against a table, but extremely fast on any subsequent lookup as it keeps the hash table in memory.

r-qvalue-old 2.8.0
Propagated dependencies: r-reshape2@1.4.4 r-ggplot2@3.5.2
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: http://bioconductor.org/packages/qvalue
Licenses: Expat
Synopsis:
Description:

.

r-phewas 0.0.0-1
Propagated dependencies: r@4.5.0 r-data-table@1.17.4 r-fgsea@1.4.1 r-intermediate@0.2-4 r-limma@3.64.1 r-mlmm@0.1.0 r-qvalue@2.40.0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: None
Licenses: GPL 2+
Synopsis: None
Description:

None.

r-mlmm 0.1.0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: https://github.com/Gregor-Mendel-Institute/mlmm
Licenses: GPL 3
Synopsis: R/mlmm
Description:

Implements an efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

r-fgsea 1.4.1
Propagated dependencies: r-rcpp@1.0.14 r-data-table@1.17.4 r-biocparallel@1.42.0 r-ggplot2@3.5.2 r-gridextra@2.3 r-fastmatch@1.1-0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: http://bioconductor.org/packages/fgsea
Licenses: Expat
Synopsis:
Description:

.

cl-qc 20220331-4.a0d8c80
Propagated dependencies: cl-alexandria@1.4-0.009b7e5 cl-split-sequence@2.0.1 cl-1am@0.0-1.8b1da94
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/jgart/qc/
Licenses: Unlicense
Synopsis: Quality control of delimited files
Description:

cl-qc is a Common Lisp library for linting the following in delimited text files:

  • Whitespace

  • Floating-point number well-formedness

  • GeneChip Platform ID checks for Affymetrix, Illumina, and others

ecl-qc 20220331-4.a0d8c80
Dependencies: ecl-alexandria@1.4-0.009b7e5 ecl-split-sequence@2.0.1
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/jgart/qc/
Licenses: Unlicense
Synopsis: Quality control of delimited files
Description:

cl-qc is a Common Lisp library for linting the following in delimited text files:

  • Whitespace

  • Floating-point number well-formedness

  • GeneChip Platform ID checks for Affymetrix, Illumina, and others

libcsv b1d5212831842ee5869d99bc208a21837e4037d5
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://github.com/rgamble/libcsv
Licenses: LGPL 2.1+
Synopsis: CSV library written in pure ANSI C
Description:

CSV library written in pure ANSI C that can read and write CSV data.

sbcl-qc 20220331-4.a0d8c80
Dependencies: sbcl-alexandria@1.4-0.009b7e5 sbcl-split-sequence@2.0.1
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/jgart/qc/
Licenses: Unlicense
Synopsis: Quality control of delimited files
Description:

cl-qc is a Common Lisp library for linting the following in delimited text files:

  • Whitespace

  • Floating-point number well-formedness

  • GeneChip Platform ID checks for Affymetrix, Illumina, and others

genenetwork-qc 0.0.1-2.b735cae
Dependencies: python-mypy@1.16.1 python-pylint@3.3.8 python-pytest@8.4.1 python-hypothesis@6.135.26
Propagated dependencies: redis@7.2.6 mariadb@10.11.14 gunicorn@22.0.0 python-redis@5.2.0 python-flask@3.1.0 python-jsonpickle@4.0.0 python-mysqlclient@2.2.7
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/fredmanglis/gnqc_py
Licenses: AGPL 3+
Synopsis: GeneNetwork Quality Control Application
Description:

GeneNetwork qc is a quality control application for the data files that eventually are used to add to the data in the GeneNetwork project.

js-strftime 0.10.0
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://github.com/samsonjs/strftime
Licenses: Expat
Synopsis: Implementation of strftime to JavaScript
Description:

This is an implementation of the strftime procedure for JavaScript. It works in (at least) node.js and browsers. It supports localization and timezones. Most standard specifiers from C are supported as well as some other extensions from Ruby.

r-runit 0.4.33
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://cran.r-project.org/package=RUnit
Licenses: GPL 2
Synopsis: R Unit Test Framework
Description:

R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools.

js-es5-shim 4.5.13
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://github.com/es-shims/es5-shim
Licenses: Expat
Synopsis: ECMAScript 5 compatibility shims for legacy JavaScript engines
Description:

es5-shim.js patches a JavaScript context to contain all ECMAScript 5 methods that can be faithfully emulated with a legacy JavaScript engine. es5-sham.js patches other ES5 methods as closely as possible. Many of these shams are intended only to allow code to be written to ES5 without causing run-time errors in older engines. In many cases, this means that these shams cause many ES5 methods to silently fail.

r-org-rn-eg-db 3.20.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://www.bioconductor.org/packages/org.Rn.eg.db/
Licenses: Artistic License 2.0
Synopsis: Genome wide annotation for Rat
Description:

This package provides mappings from Entrez gene identifiers to various annotations for the genome of the rat.

r-shiny-gn 1.10.0
Dependencies: js-datatables@1.10.19 js-selectize@0.12.6 js-strftime@0.10.0 js-highlight@9.12.0
Propagated dependencies: r-bslib@0.9.0 r-cachem@1.1.0 r-commonmark@1.9.5 r-crayon@1.5.3 r-ellipsis@0.3.2 r-fastmap@1.2.0 r-fontawesome@0.5.3 r-glue@1.8.0 r-htmltools@0.5.8.1 r-httpuv@1.6.16 r-jsonlite@2.0.0 r-later@1.4.2 r-lifecycle@1.0.4 r-mime@0.13 r-promises@1.3.3 r-r6@2.6.1 r-rlang@1.1.6 r-sourcetools@0.1.7-1 r-withr@3.0.2 r-xtable@1.8-4
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://shiny.rstudio.com
Licenses: Artistic License 2.0
Synopsis: Easy interactive web applications with R
Description:

Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.

cva6 4.2.0-1.b40bb32
Dependencies: spike@1.1.0 verilator@4.110
Channel: gn-bioinformatics
Location: gn/packages/riscv.scm (gn packages riscv)
Home page: https://docs.openhwgroup.org/projects/cva6-user-manual/
Licenses: ASL 2.0 Modified BSD
Synopsis: Application class 6-stage RISC-V CPU
Description:

CVA6 is a 6-stage, single issue, in-order CPU which implements the 64-bit RISC-V instruction set. It fully implements I, M, A and C extensions as specified in Volume I: User-Level ISA V 2.3 as well as the draft privilege extension 1.10. It implements three privilege levels M, S, U to fully support a Unix-like operating system. Furthermore it is compliant to the draft external debug spec 0.13.

It has configurable size, separate TLBs, a hardware PTW and branch-prediction (branch target buffer and branch history table). The primary design goal was on reducing critical path length.

atomic-queue 1.0-1.7d75e9e
Channel: gn-bioinformatics
Location: gn/packages/riscv.scm (gn packages riscv)
Home page: https://github.com/max0x7ba/atomic_queue
Licenses: Expat
Synopsis: C++ lockless queue
Description:

This package contains a C++11 multiple-producer-multiple-consumer lockless queues header library based on circular buffer with std::atomic.

Total results: 577