_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


nb-upload 20220414-2.b285302
Dependencies: python-requests@2.32.5 python-yaspin@3.2.0 python-rich@13.7.1
Channel: gn-bioinformatics
Location: gn/packages/notebooks.scm (gn packages notebooks)
Home page: https://git.genenetwork.org/jgart/nb-upload/
Licenses: Unlicense
Build system: python
Synopsis: Upload notebooks via CLI
Description:

nb-upload allows a user to upload notebooks to a nb instance.

ecl-nb 20220414-0.bb9bb6c
Dependencies: ecl-ningle@0.3.0-2.2e85675 ecl-clack@2.1.0-1.4916ebb ecl-drakma@2.0.8 ecl-find-port@0.1-2.811727f ecl-jzon@1.1.4 ecl-legit@1.0.0-4.877147a ecl-cl-interpol@0.2.7-1.70a1137
Channel: gn-bioinformatics
Location: gn/packages/notebooks.scm (gn packages notebooks)
Home page: https://git.genenetwork.org/jgart/nb/
Licenses: Unlicense
Build system: asdf/ecl
Synopsis: Launching interactive notebooks in GNU Guix containers
Description:

cl-nb is a Common Lisp system and API for launching interactive notebooks in GNU Guix containers.

ocaml4.07-lwt 5.5.0
Dependencies: glib@2.83.3
Propagated dependencies: ocaml4.07-mmap@1.2.0 ocaml4.07-ocplib-endian@1.2 ocaml4.07-result@1.5 ocaml4.07-seq@0.1 libev@4.33
Channel: gn-bioinformatics
Location: gn/packages/ocaml.scm (gn packages ocaml)
Home page: https://github.com/ocsigen/lwt
Licenses: LGPL 2.1
Build system: dune
Synopsis: Cooperative threads and I/O in monadic style
Description:

Lwt provides typed, composable cooperative threads. These make it easy to run normally-blocking I/O operations concurrently in a single process. Also, in many cases, Lwt threads can interact without the need for locks or other synchronization primitives.

ocaml4.07-gsl 1.19.3
Dependencies: gsl@2.8
Channel: gn-bioinformatics
Location: gn/packages/ocaml.scm (gn packages ocaml)
Home page: https://mmottl.github.io/gsl-ocaml
Licenses: GPL 3+
Build system: ocaml
Synopsis: Bindings to the GNU Scientific Library
Description:

GSL-OCaml is an interface to the GNU scientific library (GSL) for the OCaml language.

openfyba 4.1.1
Dependencies: zip@3.0 autoconf@2.69 automake@1.17 libtool@2.4.7 libgcrypt@1.11.0
Channel: gn-bioinformatics
Location: gn/packages/openfyba.scm (gn packages openfyba)
Home page: http://labs.kartverket.no/sos/
Licenses: GPL 2
Build system: gnu
Synopsis: source code release of the FYBA library
Description:

OpenFYBA is the source code release of the FYBA library.

perl-time-parsedate 2015.103
Channel: gn-bioinformatics
Location: gn/packages/perl.scm (gn packages perl)
Home page: http://search.cpan.org/dist/Time-ParseDate
Licenses:
Build system: perl
Synopsis: Parse and format time values
Description:

ParseDate

logtodo 1.0.5-acda8f2
Propagated dependencies: perl-time-parsedate@2015.103
Channel: gn-bioinformatics
Location: gn/packages/perl.scm (gn packages perl)
Home page: https://gitlab.com/pjotrp/logtodo
Licenses: GPL 2+
Build system: perl
Synopsis: Pjotr's time logger
Description:

None

r-fastmatch 1.1-0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: http://www.rforge.net/fastmatch
Licenses: GPL 2
Build system: r
Synopsis: Fast match() function
Description:

Package providing a fast match() replacement for cases that require repeated look-ups. It is slightly faster that R's built-in match() function on first match against a table, but extremely fast on any subsequent lookup as it keeps the hash table in memory.

r-intermediate 0.2-4
Dependencies: r-ggplot2@4.0.1 r-magrittr@2.0.4 r-plotly@4.11.0 r-htmlwidgets@1.6.4 r-testthat@3.3.0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: https://github.com/simecek/intermediate
Licenses: GPL 3
Build system: r
Synopsis: R/intermediate
Description:

R package for eQTl/pQTL mediation analysis.

r-qvalue-old 2.8.0
Propagated dependencies: r-reshape2@1.4.5 r-ggplot2@4.0.1
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: http://bioconductor.org/packages/qvalue
Licenses: Expat
Build system: r
Synopsis:
Description:

.

r-phewas 0.0.0-1
Propagated dependencies: r@4.5.2 r-data-table@1.17.8 r-fgsea@1.4.1 r-intermediate@0.2-4 r-limma@3.66.0 r-mlmm@0.1.0 r-qvalue@2.42.0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: None
Licenses: GPL 2+
Build system: trivial
Synopsis: None
Description:

None.

r-mlmm 0.1.0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: https://github.com/Gregor-Mendel-Institute/mlmm
Licenses: GPL 3
Build system: r
Synopsis: R/mlmm
Description:

Implements an efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

r-fgsea 1.4.1
Propagated dependencies: r-rcpp@1.1.0 r-data-table@1.17.8 r-biocparallel@1.44.0 r-ggplot2@4.0.1 r-gridextra@2.3 r-fastmatch@1.1-0
Channel: gn-bioinformatics
Location: gn/packages/phewas.scm (gn packages phewas)
Home page: http://bioconductor.org/packages/fgsea
Licenses: Expat
Build system: r
Synopsis:
Description:

.

sbcl-qc 20220331-4.a0d8c80
Dependencies: sbcl-alexandria@1.4-0.009b7e5 sbcl-split-sequence@2.0.1
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/jgart/qc/
Licenses: Unlicense
Build system: asdf/sbcl
Synopsis: Quality control of delimited files
Description:

cl-qc is a Common Lisp library for linting the following in delimited text files:

  • Whitespace

  • Floating-point number well-formedness

  • GeneChip Platform ID checks for Affymetrix, Illumina, and others

genenetwork-qc 0.0.1-2.b735cae
Dependencies: python-mypy@1.16.1 python-pylint@3.3.8 python-pytest@8.4.1 python-hypothesis@6.135.26
Propagated dependencies: redis@7.2.6 mariadb@10.11.14 gunicorn@22.0.0 python-redis@5.2.0 python-flask@3.1.0 python-jsonpickle@4.0.0 python-mysqlclient@2.2.7
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/fredmanglis/gnqc_py
Licenses: AGPL 3+
Build system: python
Synopsis: GeneNetwork Quality Control Application
Description:

GeneNetwork qc is a quality control application for the data files that eventually are used to add to the data in the GeneNetwork project.

libcsv b1d5212831842ee5869d99bc208a21837e4037d5
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://github.com/rgamble/libcsv
Licenses: LGPL 2.1+
Build system: gnu
Synopsis: CSV library written in pure ANSI C
Description:

CSV library written in pure ANSI C that can read and write CSV data.

cl-qc 20220331-4.a0d8c80
Propagated dependencies: cl-alexandria@1.4-0.009b7e5 cl-split-sequence@2.0.1 cl-1am@0.0-1.8b1da94
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/jgart/qc/
Licenses: Unlicense
Build system: asdf/source
Synopsis: Quality control of delimited files
Description:

cl-qc is a Common Lisp library for linting the following in delimited text files:

  • Whitespace

  • Floating-point number well-formedness

  • GeneChip Platform ID checks for Affymetrix, Illumina, and others

ecl-qc 20220331-4.a0d8c80
Dependencies: ecl-alexandria@1.4-0.009b7e5 ecl-split-sequence@2.0.1
Channel: gn-bioinformatics
Location: gn/packages/quality-control.scm (gn packages quality-control)
Home page: https://git.genenetwork.org/jgart/qc/
Licenses: Unlicense
Build system: asdf/ecl
Synopsis: Quality control of delimited files
Description:

cl-qc is a Common Lisp library for linting the following in delimited text files:

  • Whitespace

  • Floating-point number well-formedness

  • GeneChip Platform ID checks for Affymetrix, Illumina, and others

r-org-rn-eg-db 3.20.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://www.bioconductor.org/packages/org.Rn.eg.db/
Licenses: Artistic License 2.0
Build system: r
Synopsis: Genome wide annotation for Rat
Description:

This package provides mappings from Entrez gene identifiers to various annotations for the genome of the rat.

js-es5-shim 4.5.13
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://github.com/es-shims/es5-shim
Licenses: Expat
Build system: minify
Synopsis: ECMAScript 5 compatibility shims for legacy JavaScript engines
Description:

es5-shim.js patches a JavaScript context to contain all ECMAScript 5 methods that can be faithfully emulated with a legacy JavaScript engine. es5-sham.js patches other ES5 methods as closely as possible. Many of these shams are intended only to allow code to be written to ES5 without causing run-time errors in older engines. In many cases, this means that these shams cause many ES5 methods to silently fail.

js-strftime 0.10.0
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://github.com/samsonjs/strftime
Licenses: Expat
Build system: minify
Synopsis: Implementation of strftime to JavaScript
Description:

This is an implementation of the strftime procedure for JavaScript. It works in (at least) node.js and browsers. It supports localization and timezones. Most standard specifiers from C are supported as well as some other extensions from Ruby.

r-runit 0.4.33
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://cran.r-project.org/package=RUnit
Licenses: GPL 2
Build system: r
Synopsis: R Unit Test Framework
Description:

R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools.

r-shiny-gn 1.11.1
Dependencies: js-datatables@1.10.19 js-selectize@0.12.6 js-strftime@0.10.0 js-highlight@9.12.0
Propagated dependencies: r-bslib@0.9.0 r-cachem@1.1.0 r-commonmark@2.0.0 r-crayon@1.5.3 r-ellipsis@0.3.2 r-fastmap@1.2.0 r-fontawesome@0.5.3 r-glue@1.8.0 r-htmltools@0.5.8.1 r-httpuv@1.6.16 r-jsonlite@2.0.0 r-later@1.4.4 r-lifecycle@1.0.4 r-mime@0.13 r-promises@1.5.0 r-r6@2.6.1 r-rlang@1.1.6 r-sourcetools@0.1.7-1 r-withr@3.0.2 r-xtable@1.8-4
Channel: gn-bioinformatics
Location: gn/packages/r-shiny.scm (gn packages r-shiny)
Home page: https://shiny.rstudio.com
Licenses: Artistic License 2.0
Build system: r
Synopsis: Easy interactive web applications with R
Description:

Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.

Total results: 579