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Intense parallel workloads can be difficult to monitor. Packages crew.cluster, clustermq, and future.batchtools distribute hundreds of worker processes over multiple computers. If a worker process exhausts its available memory, it may terminate silently, leaving the underlying problem difficult to detect or troubleshoot. Using the autometric package, a worker can proactively monitor itself in a detached background thread. The worker process itself runs normally, and the thread writes to a log every few seconds. If the worker terminates unexpectedly, autometric can read and visualize the log file to reveal potential resource-related reasons for the crash. The autometric package borrows heavily from the methods of packages ps and psutil.
This package provides an R interface to Google's BigQuery database.
Archimax copulas are a mixture of Archimedean and EV copulas. This package provides definitions of several parametric families of generator and dependence function, computes CDF and PDF, estimates parameters, tests for goodness of fit, generates random sample and checks copula properties for custom constructs. In the 2-dimensional case explicit formulas for density are used, contrary to higher dimensions when all derivatives are linearly approximated. Several non-archimax families (normal, FGM, Plackett) are provided as well.
Full 64-bit resolution date and time functionality with nanosecond granularity is provided, with easy transition to and from the standard POSIXct type. Three additional classes offer interval, period and duration functionality for nanosecond-resolution timestamps.
This package provides tools for reading .xls and .sbj files which are written by the proprietary program z-Tree for developing and carrying out economic experiments.
Functions and examples are provided for transmission/disequilibrium tests for extended marker haplotypes, as in Clayton, D. and Jones, H. (1999) "Transmission/disequilibrium tests for extended marker haplotypes".
This package provides number-theoretic functions for factorization, prime numbers, twin primes, primitive roots, modular logarithm and inverses, extended GCD, Farey series and continued fractions. It includes Legendre and Jacobi symbols, some divisor functions, Euler's Phi function, etc.
This package provides functions relating to time series analysis and computational finance.
This package provides a collection of R functions for analyzing finite mixture models.
This package provides a dependency management toolkit for R. Using renv, you can create and manage project-local R libraries, save the state of these libraries to a lockfile, and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.
This package provides a fast, flexible, and comprehensive framework for quantitative text analysis in R. It provides functionality for corpus management, creating and manipulating tokens and ngrams, exploring keywords in context, forming and manipulating sparse matrices of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.
The tictoc package provides the timing functions tic and toc that can be nested. It provides an alternative to system.time() with a different syntax similar to that in another well-known software package. tic and toc are easy to use, and are especially useful when timing several sections in more than a few lines of code.
This package provides an extension to the Shiny web application framework for R, making it easy to create attractive dashboards.
Writing interfaces to command line software is cumbersome. The cmdfun package provides a framework for building function calls to seamlessly interface with shell commands by allowing lazy evaluation of command line arguments. It also provides methods for handling user-specific paths to tool installs or secrets like API keys. Its focus is to equally serve package builders who wish to wrap command line software, and to help analysts stay inside R when they might usually leave to execute non-R software.
This package provides helper functions to install and maintain the LaTeX distribution named TinyTeX, a lightweight, cross-platform, portable, and easy-to-maintain version of TeX Live. This package also contains helper functions to compile LaTeX documents, and install missing LaTeX packages automatically.
This light-weight package helps you track and visualize the progress of parallel versions of vectorized R functions of the mc*apply family.
This package provides a system for generating extendable and customizable heatmaps for exploring complex datasets, including big data and data with multiple data types.
The Structural Topic Model (STM) allows researchers to estimate topic models with document-level covariates. The package also includes tools for model selection, visualization, and estimation of topic-covariate regressions.
This package implements methods that are useful in designing research studies and analyzing data, with particular emphasis on methods that are developed for or used within the behavioral, educational, and social sciences (broadly defined). That being said, many of the methods implemented within MBESS are applicable to a wide variety of disciplines. MBESS has a suite of functions for a variety of related topics, such as effect sizes, confidence intervals for effect sizes (including standardized effect sizes and noncentral effect sizes), sample size planning (from the accuracy in parameter estimation (AIPE), power analytic, equivalence, and minimum-risk point estimation perspectives), mediation analysis, various properties of distributions, and a variety of utility functions.
This package provides tools for the computation of the matrix exponential, logarithm, square root, and related quantities.
This package provides an R interface to the QuickJS portable JavaScript engine. The engine is bundled entirely within the package, requiring no external system dependencies beyond a C compiler.
This package lets you manage Google Drive files from R.
Some basic features of MUMPS are wrapped in a class whose methods can be used for sequentially solving a sparse linear system (symmetric or not) with one or many right hand sides (dense or sparse). There is a possibility to do separately symbolic analysis, LU (or LDL^t) factorization and system solving. Third part ordering libraries are included and can be used: PORD, METIS, SCOTCH.
This package provides infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. It also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).