This package provides functions to build tables with advanced layout elements such as row spanners, column spanners, table spanners, zebra striping, and more. While allowing advanced layout, the underlying CSS-structure is simple in order to maximize compatibility with word processors such as LibreOffice. The package also contains a few text formatting functions that help outputting text compatible with HTML or LaTeX.

This package provides a wrapper for the download.file function, making it possible to download files over HTTPS across platforms. The RCurl package provides this functionality (and much more) but has external dependencies. This package has is implemented purely in R.

This is a package for estimation of a sparse inverse covariance matrix using a lasso (L1) penalty. Facilities are provided for estimates along a path of values for the regularization parameter.

This package provides a menu-driven program and library of functions for carrying out convergence diagnostics and statistical and graphical analysis of Markov chain Monte Carlo (MCMC) sampling output.

This package provides a series of additional Tcl commands and Tk widgets with style and various functions to supplement the tcltk package

This package provides classes and methods for handling genetic data. It includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...

This package enables you to estimate the p-values for predictors x against target variable y in Lasso regression, using the regularization strength when each predictor enters the active set of regularization path for the first time as the statistic.

This package provides access to phyloinformatic data in NeXML format. The package should add new functionality to R such as the possibility to manipulate NeXML objects in more various and refined way and compatibility with ape objects.

This package provides functions and an RStudio add-in that search a BibTeX or BibLaTeX file to create and insert formatted Markdown citations into the current document.

Estimate quantile regression (QR) and composite quantile regression (cqr) and with adaptive lasso penalty using interior point (IP), majorize and minimize (MM), coordinate descent (CD), and alternating direction method of multipliers algorithms (ADMM).

The r-ggformula introduces a family of graphics functions, gf_point(), gf_density(), and so on, bring the formula interface to ggplot(). This captures and extends the excellent simplicity of the lattice-graphics formula interface, while providing the intuitive capabilities of r-ggplot2.

This package provides tools to create some specific Space-Filling Design (SFD) and to test their quality.

This package provides an interface to the NetCDF file formats designed by Unidata for efficient storage of array-oriented scientific data and descriptions. Most capabilities of NetCDF version 4 are supported. Optional conversions of time units are enabled by UDUNITS version 2, also from Unidata.

This package contains methods for the detection of clusters in hierarchical clustering dendrograms.

This package allows users to create CSS grid and flexbox layouts for R/Shiny without needing to write custom CSS.

The grammar of graphics as shown in ggplot2 has provided an expressive API for users to build plots. This package ggside extends ggplot2 by allowing users to add graphical information about one of the main panel's axis using a familiar ggplot2 style API with tidy data. This package is particularly useful for visualizing metadata on a discrete axis, or summary graphics on a continuous axis such as a boxplot or a density distribution.

Rapidly create a GUI for a function you created by automatically creating widgets for arguments of the function. This package automatically parses help routines for context-sensitive help to these arguments. The interface is essentially a wrapper to some Tcl/Tk routines to both simplify and facilitate GUI creation. More advanced Tcl/Tk routines/GUI objects can be incorporated into the interface for greater customization for the more experienced.

This package aims to identify candidate genes that are differentially methylated between cases and controls. It applies Student's t-test and delta beta analysis to identify candidate genes containing multiple CpG sites.

The empirical transition matrix (etm) package estimates the matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space using the Aalen-Johansen estimator.

This package provides functions to access Twitter's filter, sample, and user streams, and to parse the output into data frames.

This package provides functions for viewing 2D and 3D data, including perspective plots, slice plots, surface plots, scatter plots, etc. It includes data sets from oceanography.

This package provides a minimal set of predicates and assertions used by the assertive package. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

The ps package implements an API to list, query, and manipulate system processes. Most of its code is based on the psutil Python package.

The base functions for set operations in R can be used for only two sets. This package RVenn provides functions for dealing with multiple sets. It uses purr to find the union, intersection and difference of three or more sets. This package also provides functions for pairwise set operations among several sets. Further, based on ggplot2 and ggforce, a Venn diagram can be drawn for two or three sets. For bigger data sets, a clustered heatmap showing the presence or absence of the elements of the sets can be drawn based on the pheatmap package. Finally, enrichment test can be applied to two sets whether an overlap is statistically significant or not.