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This package provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org
This package implements both real-valued branches of the Lambert-W function (Corless et al, 1996) <doi:10.1007/BF02124750> without the need for installing the entire GSL.
This package provides tools for data importation, recoding, and inspection. There are functions to create new project folders, R code templates, create uniquely named output directories, and to quickly obtain a visual summary for each variable in a data frame. The main feature here is the systematic implementation of the "variable key" framework for data importation and recoding.
This package provides tools for functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the g:Profiler toolkit.
This package provides tools to fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Parametric time warping aligns patterns. It aims to put corresponding features at the same locations. The algorithm searches for an optimal polynomial describing the warping. It is possible to align one sample to a reference, several samples to the same reference, or several samples to several references. One can choose between calculating individual warpings, or one global warping for a set of samples and one reference. Two optimization criteria are implemented: RMS error and WCC. Both warping of peak profiles and of peak lists are supported.
This package provides tools for generating and handling of Universally Unique Identifiers (UUIDs).
This package provides a simple interface for creating active bindings where the bound function accepts additional arguments.
This package implements density, distribution functions, quantile functions and random generation functions for a large number of univariate and multivariate distributions.
This package provides syntax highlighting of R code, specifically designed for the needs of RMarkdown packages like pkgdown, hugodown, and bookdown. It includes linking of function calls to their documentation on the web, and automatic translation of ANSI escapes in output to the equivalent HTML.
This is a package for fast image processing for images in up to 4 dimensions (two spatial dimensions, one time/depth dimension, one color dimension). It provides most traditional image processing tools (filtering, morphology, transformations, etc.) as well as various functions for easily analyzing image data using R. The package wraps CImg, a simple, modern C++ library for image processing.
This package is a r-ggplot2 extension that provides flipped components:
horizontal versions of
r-ggplot2stats andr-ggplot2geoms;vertical versions of
r-ggplot2positions.
This package provides a collection of lexical hash tables, dictionaries, and word lists.
This package provides methods for spatial data analysis, especially raster data. The included methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. Processing of very large files is supported.
This package provides high performance container data types such as queues, stacks, deques, dicts and ordered dicts.
mlr3learners extends mlr3 and mlr3proba with interfaces to essential machine learning packages on CRAN. This includes, but is not limited to: (penalized) linear and logistic regression, linear and quadratic discriminant analysis, k-nearest neighbors, naive Bayes, support vector machines, and gradient boosting.
This package aims to make it easy to use various types of fonts (TrueType, OpenType, Type 1, web fonts, etc.) in R graphs, and supports most output formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted into polygons or raster images, hence after the plot has been created, it no longer relies on the font files. No external software such as Ghostscript is needed to use this package.
Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, and several other tools.
This package provides a tool to provide an easy, intuitive and consistent access to information contained in various R models, like model formulas, model terms, information about random effects, data that was used to fit the model or data from response variables. The package mainly revolves around two types of functions: Functions that find (the names of) information, starting with find_, and functions that get the underlying data, starting with get_. The package has a consistent syntax and works with many different model objects, where otherwise functions to access these information are missing.
This package provides a set of predicates and assertions for checking the properties of US-specific complex data types. This is mainly for use by other package developers who want to include run-time testing features in their own packages.
This package provides an integrated set of functions for the analysis of multivariate normal datasets with missing values, including implementation of the EM algorithm, data augmentation, and multiple imputation.
This package abbreviates strings to a specified minimum number of characters, such that the strings remain unique (if they originally were).
This package implements various procedures for finding multiple change-points. Two methods make use of dynamic programming and pruning, with no distributional assumptions other than the existence of certain absolute moments in one method. Hierarchical and exact search methods are included. All methods return the set of estimated change-points as well as other summary information.