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This package provides a stable interface for interactions between Snakemake and its executor plugins.
DecayLanguage implements a language to describe and convert particle decays between digital representations, effectively making it possible to interoperate several fitting programs. Particular interest is given to programs dedicated to amplitude analyses.
Clarabel.rs is a Rust implementation of an interior point numerical solver for convex optimization problems using a novel homogeneous embedding.
This package provides Numba-accelerated implementations of common SciPy probability distributions and others used in particle physics.
The supported distributions are:
Uniform
(Truncated) Normal
Log-normal
Poisson
Binomial
(Truncated) Exponential
Student's t
Voigtian
Crystal Ball
Generalised double-sided Crystal Ball
Tsallis-Hagedorn, a model for the minimum bias pT distribution
Q-Gaussian
Bernstein density (not normalized to unity)
Cruijff density (not normalized to unity)
CMS-Shape
Generalized Argus
xarray_einstats provides wrappers around some NumPy and SciPy functions and around einops with an API and features adapted to xarray.
hepunits collects the most commonly used units and constants in the HEP System of Units, as derived from the basic units originally defined by the CLHEP project.
This is a package for image processing with Dask arrays. Features:
Provides support for loading image files.
Implements commonly used N-D filters.
Includes a few N-D Fourier filters.
Provides some functions for working with N-D label images.
Supports a few N-D morphological operators.
xarray-dataclasses is a Python package that makes it easy to create xarray's DataArray and Datase objects that are "typed" (i.e. fixed dimensions, data type, coordinates, attributes, and name) using the Python's dataclass.
This package provides utilities and tools for open data science including tools for accessing data sets in Python.
Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. It implements several methods for sequential model-based optimization. skopt aims to be accessible and easy to use in many contexts.
This package implements a functionality for mean-preserving interpolation of 1D data (for example, time series) with splines.
This package provides a simple and easy-to-use PID controller.
Histoprint uses a mix of terminal color codes and Unicode trickery (i.e. combining characters) to plot overlaying histograms.
Pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with structured (tabular, multidimensional, potentially heterogeneous) and time series data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python.
Quantities is designed to handle arithmetic and conversions of physical quantities, which have a magnitude, dimensionality specified by various units, and possibly an uncertainty. It builds on the NumPy library and is designed to work with numpy.ufuncs, many of which are already supported.
A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by python-snakemake-executor-plugin-slurm).
This package provides a Python library for calculating Evapotranspiration using various standard methods.
pandarallel allows any Pandas user to take advantage of their multi-core computer, while Pandas uses only one core. pandarallel also offers nice progress bars (available on Notebook and terminal) to get an rough idea of the remaining amount of computation to be done.
Pandas 0.23 added a simple API for registering accessors with Pandas objects. Pandas-flavor extends Pandas' extension API by
adding support for registering methods as well
making each of these functions backwards compatible with older versions of Pandas
This package provides a framework for building scientific applications. It aims to bring state of the art software design practices to scientific computing, with the goal of providing a strong skeleton on which to build scientific codes by steering the implementation towards usability and maintainability.
nibabel is a library that provides read and write access to common neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, ECAT and Philips PAR/REC. In addition, NiBabel also supports FreeSurfer’s MGH, geometry, annotation and morphometry files, and provides some limited support for DICOM.
Bottleneck is a collection of fast, NaN-aware NumPy array functions written in C.
The SciPy library is one of the core packages that make up the SciPy stack. It provides many user-friendly and efficient numerical routines such as routines for numerical integration and optimization.
This package implements many useful tools for projects involving fuzzy logic, also known as grey logic.