Mudskipper is a tool for projecting genomic alignments to transcriptomic coordinates.

Megahit is a fast and memory-efficient NGS assembler. It is optimized for metagenomes, but also works well on generic single genome assembly (small or mammalian size) and single-cell assembly.

PRINSEQ is a bioinformatics tool to help you preprocess your genomic or metagenomic sequence data in FASTA or FASTQ formats. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.

HTSlib is a C library for reading/writing high-throughput sequencing data. It also provides the bgzip, htsfile, and tabix utilities.

Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. This library provides sequence-related modules.

The loom file format is an efficient format for very large omics datasets, consisting of a main matrix, optional additional layers, a variable number of row and column annotations. Loom also supports sparse graphs. This library makes it easy to work with .loom files for single-cell RNA-seq data.

GNU Bison is a general-purpose parser generator. It can build a deterministic or generalized LR parser from an annotated, context-free grammar. It is versatile enough to have many applications, from parsers for simple tools through complex programming languages.

Bison also provides an implementation of yacc, as specified by POSIX.

qBittorrent is a BitTorrent client programmed in C++/Qt that uses libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.

It aims to be a good alternative to all other BitTorrent clients out there. qBittorrent is fast, stable and provides unicode support as well as many features.

mktorrent is a simple command-line utility to create BitTorrent metainfo files, often known simply as torrents, from both single files and whole directories. It can add multiple trackers and web seed URLs, and set the private flag to disallow advertisement through the distributed hash table (DHT) and Peer Exchange. Hashing is multi-threaded and will take advantage of multiple processor cores where possible.

Tremc is a console client, with a curses interface, for the Transmission BitTorrent daemon.

transmission-remote-gtk is a GTK client for remote management of the Transmission BitTorrent client, using its HTTP RPC protocol.

rTorrent is a BitTorrent client with an ncurses interface. It supports full encryption, DHT, PEX, and Magnet Links. It can also be controlled via XML-RPC over SCGI.

qBittorrent Enhanced is a bittorrent client based on qBittorrent with the following features:

• Auto Ban Xunlei, QQ, Baidu, Xfplay, DLBT and Offline downloader

• Auto Ban Unknown Peer from China Option (Default: OFF)

• Auto Update Public Trackers List (Default: OFF)

• Auto Ban BitTorrent Media Player Peer Option (Default: OFF)

• Peer whitelist/blacklist

LibTorrent is a BitTorrent library used by and developed in parallel with the BitTorrent client rtorrent. It is written in C++ with emphasis on speed and efficiency.

Transmission is a BitTorrent client that comes with graphical, textual, and Web user interfaces. Transmission also has a daemon for unattended operations. It supports local peer discovery, full encryption, DHT, µTP, PEX and Magnet Links.

qBittorrent Enhanced is a bittorrent client based on qBittorrent with the following features:

• Auto Ban Xunlei, QQ, Baidu, Xfplay, DLBT and Offline downloader

• Auto Ban Unknown Peer from China Option (Default: OFF)

• Auto Update Public Trackers List (Default: OFF)

• Auto Ban BitTorrent Media Player Peer Option (Default: OFF)

• Peer whitelist/blacklist

Deluge contains the common features to BitTorrent clients such as Protocol Encryption, DHT, Local Peer Discovery (LSD), Peer Exchange (PEX), UPnP, NAT-PMP, Proxy support, Web seeds, global and per-torrent speed limits. Deluge heavily utilises the libtorrent library. It is designed to run as both a normal standalone desktop application and as a client-server.

qBittorrent is a BitTorrent client programmed in C++/Qt that uses libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.

It aims to be a good alternative to all other BitTorrent clients out there. qBittorrent is fast, stable and provides unicode support as well as many features.

Aria2 is a lightweight, multi-protocol & multi-source command-line download utility. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink. Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.

uGet is portable download manager with GTK+ interface supporting HTTP, HTTPS, BitTorrent and Metalink, supporting multi-connection downloads, download scheduling, download rate limiting.

libtorrent-rasterbar is a feature-complete C++ BitTorrent implementation focusing on efficiency and scalability. It runs on embedded devices as well as desktops.

Stig is a TUI and CLI client for the BitTorrent client Transmission.

The SWORD Project is a free Bible software project used to create Bible software, with support for multiple texts and languages.

In 2002, Sam Williams wrote Free as in Freedom, a biography of Richard M. Stallman. In its epilogue, Williams expressed hope that choosing to distribute his book under the GNU Free Documentation License would enable and encourage others to share corrections and their own perspectives through modifications to his work. Free as in Freedom (2.0) is Stallman's revision of the original biography. While preserving Williams's viewpoint, it includes factual corrections and extensive new commentary by Stallman, as well as new prefaces by both authors written for the occasion. It is a rare kind of biography, where the reader has the benefit of both the biographer's original words and the subject's response.