_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.

argweaver 0.8.1
Propagated dependencies: python2@2.7.18
Channel: guix-arg
Location: guix-arg/packages/argweaver.scm (guix-arg packages argweaver)
Home page: https://mdrasmus.github.io/argweaver
Licenses: Expat
Build system: gnu
Synopsis: Ancestral recombination graph sampling method
Description:

Ancestral recombination graph sampling method.

python-pysam-stubs 0.18.0.0.2
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://github.com/marcelm/pysam-stubs/
Licenses:
Build system: pyproject
Synopsis:
#<unspecified>
impute5 1.2.0
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://jmarchini.org/software/
Licenses:
Build system: copy
Synopsis: Genotype imputation method
Description:

IMPUTE 5 is a genotype imputation method that can scale to reference panels with millions of samples. This method continues to refine the observation made in the IMPUTE2 method, that accuracy is optimized via use of a custom subset of haplotypes when imputing each individual. It achieves fast, accurate, and memory-efficient imputation by selecting haplotypes using the Positional Burrows Wheeler Transform (PBWT). By using the PBWT data structure at genotyped markers, IMPUTE 5 identifies locally best matching haplotypes and long identical by state segments. The method then uses the selected haplotypes as conditioning states within the IMPUTE model.

sapphire 1.0.0-97768d8
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://github.com/rwk-unil/sapphire
Licenses: Expat
Build system: gnu
Synopsis: Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)
Description:

Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)

xcftools 0.1.1
Dependencies: boost@1.89.0 curl@8.6.0 htslib@1.21 zlib@1.3.1
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://odelaneau.github.io/xcftools/
Licenses: Expat
Build system: gnu
Synopsis: Set of tools for handling XCF files
Description:

Set of tools for handling XCF files

shapeit5 5.1.1
Dependencies: boost@1.89.0 curl@8.6.0 htslib@1.21 libdeflate@1.19 openssl@3.0.8 xcftools@0.1.1 zlib@1.3.1
Propagated dependencies: xcftools@0.1.1
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://odelaneau.github.io/shapeit5/
Licenses: Expat
Build system: gnu
Synopsis: Segmented HAPlotype Estimation and Imputation Tool
Description:

SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.

python-whatshap 2.8
Propagated dependencies: python-biopython@1.85 python-networkx@3.4.2 python-pulp@2.4 python-pyfaidx@0.7.2.1 python-pysam@0.23.0 python-scipy@1.12.0 python-xopen@1.8.0
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://github.com/whatshap/whatshap
Licenses:
Build system: pyproject
Synopsis: Phase genomic variants using DNA sequencing reads
Description:

phase genomic variants using DNA sequencing reads.

shapeit4 4.2.2
Dependencies: boost@1.89.0 curl@8.6.0 htslib@1.21 openssl@3.0.8 zlib@1.3.1
Channel: guix-arg
Location: guix-arg/packages/bioinformatics.scm (guix-arg packages bioinformatics)
Home page: https://odelaneau.github.io/shapeit4/
Licenses: Expat
Build system: gnu
Synopsis: Segmented HAPlotype Estimation and Imputation Tool
Description:

SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.

polegon 0.1.3
Channel: guix-arg
Location: guix-arg/packages/polegon.scm (guix-arg packages polegon)
Home page: https://github.com/YunDeng98/POLEGON
Licenses: Expat
Build system: gnu
Synopsis: Prior-Oblivious Length Estimation in Genealogies with Oriented Network
Description:

POLEGON stands for Prior-Oblivious Length Estimation in Genealogies with Oriented Network. POLEGON works with inferred Ancestral Recombination Graph (ARG) to re-calibrate the branch length, without the usage of any prior.

python-tsdate 0.2.6
Propagated dependencies: python-appdirs@1.4.4 python-mpmath@1.3.0 python-numba@0.61.0 python-numpy@1.26.4 python-scipy@1.12.0 python-tqdm@4.67.1 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: http://pypi.python.org/pypi/tsdate
Licenses: Expat
Build system: pyproject
Synopsis: Infer node ages from a tree sequence topology.
Description:

Infer node ages from a tree sequence topology.

python-tsconvert 4ed3c0f
Propagated dependencies: python-dendropy@4.5.1 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/tskit-dev/tsconvert
Licenses: Expat
Build system: pyproject
Synopsis: Utilities for converting tree sequences to and from other formats
Description:

Utilities for converting tree sequences to and from other formats

python-gaiapy 0.1.2
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page:
Licenses: Expat
Build system: pyproject
Synopsis: Geographic Ancestry Inference Algorithm - Python implementation (continuous space parsimony methods)
Description:

Geographic Ancestry Inference Algorithm - Python implementation (continuous space parsimony methods).

python-msprime 1.4.1b1
Propagated dependencies: python-demes@0.2.3 python-newick@1.9.0 python-numpy@1.26.4 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/msprime
Licenses: GPL 3
Build system: pyproject
Synopsis: Simulate genealogical trees and genomic sequence data using population genetic models
Description:

Simulate genealogical trees and genomic sequence data using population genetic models

python-tstrait 0.1.2
Propagated dependencies: python-numba@0.61.0 python-numpy@1.26.4 python-pandas@2.2.3 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tstrait/
Licenses: Expat
Build system: pyproject
Synopsis: Quantitative trait simulation of tree sequence data
Description:

Quantitative trait simulation of tree sequence data

python-tslmm 0.0.1
Propagated dependencies: python-numba@0.61.0 python-numpy@1.26.4 python-scipy@1.12.0 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/hanbin973/tslmm
Licenses: Expat
Build system: pyproject
Synopsis: Linear mixed models from ancestral recombination graphs.
Description:

Linear mixed models from ancestral recombination graphs.

python-tseda 0.1
Propagated dependencies: python-appdirs@1.4.4 python-cartopy@0.24.1 python-click@8.1.8 python-contourpy@1.3.2 python-daiquiri@3.0.1 python-dask@2024.12.1 python-diskcache@5.6.3 python-geoviews@1.14.1 python-holoviews@1.20.2 python-numba@0.61.0 python-panel@1.6.1 python-tsbrowse@0.1.1 python-tskit@1.0.2 python-tszip@0.3.1 python-xyzservices-next@2025.4.0
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/percyfal/tseda
Licenses: Expat
Build system: pyproject
Synopsis: Utilities for converting tree sequences to and from other formats
Description:

Utilities for converting tree sequences to and from other formats

python-twisst2 0.0.5
Propagated dependencies: python-cyvcf2@0.31.2 python-numpy@1.26.4 python-sticcs@0.0.5 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/simonhmartin/twisst2
Licenses: Expat
Build system: pyproject
Synopsis: Topology weighting from unphased genotypes of any ploidy.
Description:

Topology weighting from unphased genotypes of any ploidy.

python-stdpopsim 0.3.0
Propagated dependencies: python-appdirs@1.4.4 python-attrs@25.3.0 python-humanize@4.14.0 python-msprime@1.4.1b1 python-numpy@1.26.4 python-pyslim@1.1b1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/popsim-consortium/stdpopsim
Licenses: GPL 3
Build system: pyproject
Synopsis: A library of population genetic simulation models
Description:

A Python library of population genetic simulation models

python-tsinfer 0.5.1
Propagated dependencies: python-attrs@25.3.0 python-daiquiri@3.0.1 python-humanize@4.14.0 python-lmdb@1.0.0 python-numba@0.61.0 python-numcodecs@0.13.1 python-numpy@1.26.4 python-psutil@7.0.0 python-six@1.17.0 python-sortedcontainers@2.4.0 python-tqdm@4.67.1 python-tskit@1.0.2 python-zarr@2.18.7
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tsinfer
Licenses: Expat
Build system: pyproject
Synopsis: Infer tree sequences from genetic variation data.
Description:

Infer tree sequences from genetic variation data.

python-arg-lmm 0.1.1
Propagated dependencies: python-arg-needle-lib@1.2.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/PalamaraLab/arg-lmm
Licenses:
Build system: pyproject
Synopsis: Efficient complex trait analyses from ARG
Description:

Efficient complex trait analyses from ARG.

python-sparg 2.0.0
Propagated dependencies: python-ipywidgets@8.1.2 python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0 python-sympy@1.13.3 python-tqdm@4.67.1 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/osmond-lab/sparg
Licenses: GPL 3
Build system: pyproject
Synopsis: Spatial inference from ancestral recombination graphs
Description:

Spatial inference from ancestral recombination graphs

python-sticcs 0.0.5
Propagated dependencies: python-cyvcf2@0.31.2 python-numpy@1.26.4 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/simonhmartin/sticcs
Licenses: Expat
Build system: pyproject
Synopsis: Model-free inference of tree sequences from unphased genotypes.
Description:

Model-free inference of tree sequences from unphased genotypes.

python-fastgaia 0.1.2
Propagated dependencies: python-numpy@1.26.4 python-pandas@2.2.3 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/chris-a-talbot/fastgaia
Licenses: Expat
Build system: pyproject
Synopsis: A tool to infer node locations and states from tree sequences.
Description:

This package provides a tool to infer node locations and states from tree sequences.

python-twisstntern 0.1.0
Propagated dependencies: python-ete3@3.1.3 python-matplotlib@3.8.2 python-msprime@1.4.1b1 python-numpy@1.26.4 python-pandas@2.2.3 python-pyyaml@6.0.2 python-requests@2.32.5 python-scikit-learn@1.7.0 python-scipy@1.12.0 python-seaborn@0.13.2 python-tskit@1.0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/HilaLifchitz/twisstntern_v2
Licenses:
Build system: pyproject
Synopsis:
Description:
Page: 123
Total packages: 68