_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
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  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.

python-arg-needle 1.1.0
Dependencies: pybind11@3.0.2 boost@1.89.0 eigen-for-asmc@3.3.9 hdf5@1.14.6 roaring@4.5.1
Propagated dependencies: python-asmc-asmc@1.4.0 python-arg-needle-lib@1.2.1 python-fastcluster@1.3.0 python-msprime@1.4.2 python-numpy@2.3.1 python-pandas@2.3.3 python-psutil@7.2.2 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://palamaralab.github.io/software/argneedle/
Licenses: GPL 3
Build system: pyproject
Synopsis: ARG-Needle is an algorithm to reconstruct the genealogical history (ancestral recombination graph, ARG) of large collections of sequenced or genotyped genomes.
Description:

ARG-Needle is an algorithm to reconstruct the genealogical history (ancestral recombination graph, ARG) of large collections of sequenced or genotyped genomes.

python-arg-needle-lib 1.2.1
Dependencies: pybind11@3.0.2 boost@1.89.0 eigen-for-asmc@3.3.9 hdf5@1.14.6 roaring@4.5.1
Propagated dependencies: python-click@8.3.1 python-h5py@3.15.1 python-msprime@1.4.2 python-pandas@2.3.3 python-scipy@1.16.3 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://palamaralab.github.io/software/argneedle/
Licenses: GPL 3
Build system: pyproject
Synopsis:
Description:
roaring 4.5.1
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://github.com/RoaringBitmap/CRoaring
Licenses: ASL 2.0 Expat
Build system: cmake
Synopsis: Portable Roaring bitmaps in C (and C++) with full support for your favorite compiler (GNU GCC, LLVM's clang, Visual Studio, Apple Xcode, Intel oneAPI).
Description:

Portable Roaring bitmaps in C (and C++) with full support for your favorite compiler (GNU GCC, LLVM's clang, Visual Studio, Apple Xcode, Intel oneAPI).

python-asmc-preparedecoding 2.2.5
Dependencies: cereal@1.3.2 cxxopts@3.2.1 eigen-for-asmc@3.3.9 fmt-for-asmc@7.1.3 gmp@6.3.0 mpfr@4.2.2 pkg-config@0.29.2 zlib@1.3.1
Propagated dependencies: python-numpy@2.3.1
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://github.com/PalamaraLab/PrepareDecoding
Licenses: GPL 3
Build system: pyproject
Synopsis: Tool to compute decoding quantities.
Description:

Tool to compute decoding quantities.

python-asmc-asmc 1.4.0
Dependencies: boost@1.89.0 eigen-for-asmc@3.3.9 fmt-for-asmc@7.1.3 google-highway@1.3.0 range-v3@0.12.0 zlib@1.3.1
Propagated dependencies: python-asmc-preparedecoding@2.2.5
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://github.com/PalamaraLab/ASMC
Licenses: GPL 3
Build system: pyproject
Synopsis: The Ascertained Sequentially Markovian Coalescent and related tools
Description:

The Ascertained Sequentially Markovian Coalescent and related tools.

argweaver 0.8.1
Propagated dependencies: python2@2.7.18
Channel: guix-arg
Location: guix-arg/packages/argweaver.scm (guix-arg packages argweaver)
Home page: https://mdrasmus.github.io/argweaver
Licenses: Expat
Build system: gnu
Synopsis: Ancestral recombination graph sampling method
Description:

Ancestral recombination graph sampling method.

polegon 0.1.3
Channel: guix-arg
Location: guix-arg/packages/polegon.scm (guix-arg packages polegon)
Home page: https://github.com/YunDeng98/POLEGON
Licenses: Expat
Build system: gnu
Synopsis: Prior-Oblivious Length Estimation in Genealogies with Oriented Network
Description:

POLEGON stands for Prior-Oblivious Length Estimation in Genealogies with Oriented Network. POLEGON works with inferred Ancestral Recombination Graph (ARG) to re-calibrate the branch length, without the usage of any prior.

python-msprime 1.4.2
Propagated dependencies: python-demes@0.2.3 python-newick@1.9.0 python-numpy@2.3.1 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/msprime
Licenses: GPL 3
Build system: pyproject
Synopsis: Simulate genealogical trees and genomic sequence data using population genetic models
Description:

Simulate genealogical trees and genomic sequence data using population genetic models

python-tskit-arg-visualizer 0.1.2
Propagated dependencies: python-ipython@9.8.0 python-msprime@1.4.2 python-pandas@2.3.3 python-tqdm@4.67.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/kitchensjn/tskit_arg_visualizer
Licenses: Expat
Build system: pyproject
Synopsis: Interactive visualization method for ancestral recombination graphs
Description:

Interactive visualization method for ancestral recombination graphs.

python-gaiapy 0.1.2
Propagated dependencies: python-numpy@2.3.1 python-scipy@1.16.3 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page:
Licenses: Expat
Build system: pyproject
Synopsis: Geographic Ancestry Inference Algorithm - Python implementation (continuous space parsimony methods)
Description:

Geographic Ancestry Inference Algorithm - Python implementation (continuous space parsimony methods).

python-sticcs 0.0.8
Propagated dependencies: python-cyvcf2@0.31.2 python-numpy@2.3.1 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/simonhmartin/sticcs
Licenses: Expat
Build system: pyproject
Synopsis: Model-free inference of tree sequences from unphased genotypes.
Description:

Model-free inference of tree sequences from unphased genotypes.

python-tstrait 0.1.2
Propagated dependencies: python-numba@0.62.1 python-numpy@2.3.1 python-pandas@2.3.3 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tstrait/
Licenses: Expat
Build system: pyproject
Synopsis: Quantitative trait simulation of tree sequence data
Description:

Quantitative trait simulation of tree sequence data

python-twisstntern 0.1.0
Propagated dependencies: python-ete3@3.1.3 python-matplotlib@3.10.8 python-msprime@1.4.2 python-numpy@2.3.1 python-pandas@2.3.3 python-pyyaml@6.0.2 python-requests@2.32.5 python-scikit-learn@1.7.2 python-scipy@1.16.3 python-seaborn@0.13.2 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/HilaLifchitz/twisstntern_v2
Licenses:
Build system: pyproject
Synopsis:
Description:
python-tszip 0.3.1
Propagated dependencies: python-humanize@4.14.0 python-numcodecs@0.13.1 python-numpy@2.3.1 python-tskit@1.0.3 python-zarr@2.18.7
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/tskit-dev/tszip
Licenses: Expat
Build system: pyproject
Synopsis: Compression utilities for tree sequences
Description:

Compression utilities for tree sequences.

python-arg-lmm 0.1.1
Propagated dependencies: python-arg-needle-lib@1.2.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/PalamaraLab/arg-lmm
Licenses: GPL 3
Build system: pyproject
Synopsis: Efficient complex trait analyses from ARG
Description:

Efficient complex trait analyses from ARG.

python-stdpopsim 0.3.0
Propagated dependencies: python-appdirs@1.4.4 python-attrs@25.3.0 python-humanize@4.14.0 python-msprime@1.4.2 python-numpy@2.3.1 python-pyslim@1.1b1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/popsim-consortium/stdpopsim
Licenses: GPL 3
Build system: pyproject
Synopsis: A library of population genetic simulation models
Description:

A Python library of population genetic simulation models

python-argscape 0.7.5
Propagated dependencies: python-apscheduler@3.11.2 python-cryptography@44.0.0 python-fastapi@0.131.0 python-fastgaia@0.1.2 python-fiona@1.10.1 python-gaiapy@0.1.2 python-geopandas@1.1.1 python-matplotlib@3.10.8 python-msprime@1.4.2 python-numpy@2.3.1 python-pandas@2.3.3 python-pydantic@2.12.5 python-pyproj@3.7.2 python-dotenv@1.1.1 python-multipart@0.0.20 python-scikit-learn@1.7.2 python-scipy@1.16.3 python-shapely@2.1.1 python-sympy@1.13.3 python-tqdm@4.67.1 python-tsdate@0.2.7 python-tskit@1.0.3 python-tszip@0.3.1 python-uvicorn@0.40.0
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/chris-a-talbot/argscape
Licenses:
Build system: pyproject
Synopsis: ARGscape: interactive ARG visualization and analysis
Description:

ARGscape: interactive ARG visualization and analysis.

python-pyslim 1.1b1
Propagated dependencies: python-msprime@1.4.2 python-numpy@2.3.1 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/tskit-dev/pyslim
Licenses: Expat
Build system: pyproject
Synopsis: Manipulate tree sequences produced by SLiM.
Description:

Manipulate tree sequences produced by SLiM.

python-twisst2 0.0.8
Propagated dependencies: python-cyvcf2@0.31.2 python-numpy@2.3.1 python-sticcs@0.0.8 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/simonhmartin/twisst2
Licenses: Expat
Build system: pyproject
Synopsis: Topology weighting from unphased genotypes of any ploidy.
Description:

Topology weighting from unphased genotypes of any ploidy.

python-espalier 0.1.2
Propagated dependencies: python-biopython@1.86 python-click@8.3.1 python-dendropy@5.0.8 python-numpy@2.3.1 python-pandas@2.3.3 python-scipy@1.16.3 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/davidrasm/Espalier
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests
Description:

Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.

python-tscompare 0.2.1
Propagated dependencies: python-tskit@1.0.3 python-scipy@1.16.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tscompare
Licenses: Expat
Build system: pyproject
Synopsis: Utilities for comparing tree sequences
Description:

Utilities for comparing tree sequences

python-tspop 0.0.2
Propagated dependencies: python-matplotlib@3.10.8 python-numpy@2.3.1 python-pandas@2.3.3 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/gtsambos/tspop
Licenses: Expat
Build system: pyproject
Synopsis: Extracts population-based ancestry from simulated tree sequence datasets.
Description:

Extracts population-based ancestry from simulated tree sequence datasets.

python-fastgaia 0.1.2
Propagated dependencies: python-numpy@2.3.1 python-pandas@2.3.3 python-tskit@1.0.3
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/chris-a-talbot/fastgaia
Licenses: Expat
Build system: pyproject
Synopsis: A tool to infer node locations and states from tree sequences.
Description:

This package provides a tool to infer node locations and states from tree sequences.

python-threads 0.2.1-25c6c0d
Dependencies: boost@1.89.0 hdf5@1.14.6
Propagated dependencies: python-click@8.3.1 python-xarray@2025.12.0 python-h5py@3.15.1 python-json-logger@4.0.0 python-pandas@2.3.3 python-numba@0.62.1 python-numpy@2.3.1 python-tszip@0.3.1 python-arg-needle-lib@1.2.1 python-cyvcf2@0.31.2 python-ray@2.38.0 python-pgenlib@0.93.0 python-tqdm@4.67.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://palamaralab.github.io/software/threads/
Licenses: GPL 3
Build system: pyproject
Synopsis: ARG inference software
Description:

Threads-arg is a threading-based method to reconstruct the ancestral recombination graph (ARG) from large datasets of sequenced, imputed, or genotyped genomes and to perform ARG-based genotype imputation.

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Total packages: 66