_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.

python-arg-needle 1.1.0
Dependencies: pybind11@2.13.6 boost@1.89.0 eigen-for-asmc@3.3.9 hdf5@1.14.6 roaring@4.5.1
Propagated dependencies: python-asmc-asmc@1.4.0 python-arg-needle-lib@1.2.1 python-fastcluster@1.2.6 python-msprime@1.4.0 python-numpy@1.26.4 python-pandas@2.2.3 python-psutil@7.0.0 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://palamaralab.github.io/software/argneedle/
Licenses: GPL 3
Build system: pyproject
Synopsis: ARG-Needle is an algorithm to reconstruct the genealogical history (ancestral recombination graph, ARG) of large collections of sequenced or genotyped genomes.
Description:

ARG-Needle is an algorithm to reconstruct the genealogical history (ancestral recombination graph, ARG) of large collections of sequenced or genotyped genomes.

python-asmc-preparedecoding 2.2.5
Dependencies: cereal@1.3.2 cxxopts@3.2.1 eigen-for-asmc@3.3.9 fmt-for-asmc@7.1.3 gmp@6.3.0 mpfr@4.2.2 pkg-config@0.29.2 zlib@1.3.1
Propagated dependencies: python-numpy@1.26.4
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://github.com/PalamaraLab/PrepareDecoding
Licenses: GPL 3
Build system: pyproject
Synopsis: Tool to compute decoding quantities.
Description:

Tool to compute decoding quantities.

roaring 4.5.1
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://github.com/RoaringBitmap/CRoaring
Licenses: ASL 2.0 Expat
Build system: cmake
Synopsis: Portable Roaring bitmaps in C (and C++) with full support for your favorite compiler (GNU GCC, LLVM's clang, Visual Studio, Apple Xcode, Intel oneAPI).
Description:

Portable Roaring bitmaps in C (and C++) with full support for your favorite compiler (GNU GCC, LLVM's clang, Visual Studio, Apple Xcode, Intel oneAPI).

python-arg-needle-lib 1.2.1
Dependencies: pybind11@2.13.6 boost@1.89.0 eigen-for-asmc@3.3.9 hdf5@1.14.6 roaring@4.5.1
Propagated dependencies: python-click@8.1.8 python-h5py@3.13.0 python-msprime@1.4.0 python-pandas@2.2.3 python-scipy@1.12.0 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://palamaralab.github.io/software/argneedle/
Licenses: GPL 3
Build system: pyproject
Synopsis:
Description:
python-asmc-asmc 1.4.0
Dependencies: boost@1.89.0 eigen-for-asmc@3.3.9 fmt-for-asmc@7.1.3 google-highway@1.3.0 range-v3@0.12.0 zlib@1.3.1
Propagated dependencies: python-asmc-preparedecoding@2.2.5
Channel: guix-arg
Location: guix-arg/packages/arg-needle.scm (guix-arg packages arg-needle)
Home page: https://github.com/PalamaraLab/ASMC
Licenses: GPL 3
Build system: pyproject
Synopsis: The Ascertained Sequentially Markovian Coalescent and related tools
Description:

The Ascertained Sequentially Markovian Coalescent and related tools.

argweaver 0.8.1
Propagated dependencies: python2@2.7.18
Channel: guix-arg
Location: guix-arg/packages/argweaver.scm (guix-arg packages argweaver)
Home page: https://mdrasmus.github.io/argweaver
Licenses: Expat
Build system: gnu
Synopsis: Ancestral recombination graph sampling method
Description:

Ancestral recombination graph sampling method.

polegon 0.1.3
Channel: guix-arg
Location: guix-arg/packages/polegon.scm (guix-arg packages polegon)
Home page: https://github.com/YunDeng98/POLEGON
Licenses: Expat
Build system: gnu
Synopsis: Prior-Oblivious Length Estimation in Genealogies with Oriented Network
Description:

POLEGON stands for Prior-Oblivious Length Estimation in Genealogies with Oriented Network. POLEGON works with inferred Ancestral Recombination Graph (ARG) to re-calibrate the branch length, without the usage of any prior.

python-msprime 1.4.0
Propagated dependencies: python-demes@0.2.3 python-newick@1.9.0 python-numpy@1.26.4 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/msprime
Licenses: GPL 3
Build system: pyproject
Synopsis: Simulate genealogical trees and genomic sequence data using population genetic models
Description:

Simulate genealogical trees and genomic sequence data using population genetic models

python-sparg 2.0.0
Propagated dependencies: python-ipywidgets@8.1.2 python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0 python-sympy@1.13.3 python-tqdm@4.67.1 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/osmond-lab/sparg
Licenses: GPL 3
Build system: pyproject
Synopsis: Spatial inference from ancestral recombination graphs
Description:

Spatial inference from ancestral recombination graphs

python-threads 0.2.1
Dependencies: boost@1.89.0 hdf5@1.14.6
Propagated dependencies: python-click@8.1.8 python-xarray@2023.12.0 python-h5py@3.13.0 python-json-logger@2.0.7 python-pandas@2.2.3 python-numba@0.61.0 python-numpy@1.26.4 python-tszip@0.3.0 python-arg-needle-lib@1.2.1 python-cyvcf2@0.31.2 python-ray@2.38.0 python-pgenlib@0.93.0 python-tqdm@4.67.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://palamaralab.github.io/software/threads/
Licenses: GPL 3
Build system: pyproject
Synopsis: ARG inference software
Description:

Threads-arg is a threading-based method to reconstruct the ancestral recombination graph (ARG) from large datasets of sequenced, imputed, or genotyped genomes and to perform ARG-based genotype imputation.

python-twisstntern 0.1.0
Propagated dependencies: python-ete3@3.1.3 python-matplotlib@3.8.2 python-msprime@1.4.0 python-numpy@1.26.4 python-pandas@2.2.3 python-pyyaml@6.0.2 python-requests@2.32.5 python-scikit-learn@1.7.0 python-scipy@1.12.0 python-seaborn@0.13.2 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/HilaLifchitz/twisstntern_v2
Licenses:
Build system: pyproject
Synopsis:
Description:
python-sticcs 0.0.5
Propagated dependencies: python-cyvcf2@0.31.2 python-numpy@1.26.4 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/simonhmartin/sticcs
Licenses: Expat
Build system: pyproject
Synopsis: Model-free inference of tree sequences from unphased genotypes.
Description:

Model-free inference of tree sequences from unphased genotypes.

python-tslmm 0.0.1
Propagated dependencies: python-numba@0.61.0 python-numpy@1.26.4 python-scipy@1.12.0 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/gtsambos/tspop
Licenses: Expat
Build system: pyproject
Synopsis: Linear mixed models from ancestral recombination graphs.
Description:

Linear mixed models from ancestral recombination graphs.

python-tseda 0.1
Propagated dependencies: python-appdirs@1.4.4 python-cartopy@0.24.1 python-click@8.1.8 python-contourpy@1.3.2 python-daiquiri@3.0.1 python-dask@2024.12.1 python-diskcache@5.6.3 python-geoviews@1.14.1 python-holoviews@1.20.2 python-numba@0.61.0 python-panel@1.6.1 python-tsbrowse@0.0.3 python-tskit@1.0.1 python-tszip@0.3.0 python-xyzservices-next@2025.4.0
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/percyfal/tseda
Licenses: Expat
Build system: pyproject
Synopsis: Utilities for converting tree sequences to and from other formats
Description:

Utilities for converting tree sequences to and from other formats

python-pyslim 1.1b1
Propagated dependencies: python-msprime@1.4.0 python-numpy@1.26.4 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/tskit-dev/pyslim
Licenses: Expat
Build system: pyproject
Synopsis: Manipulate tree sequences produced by SLiM.
Description:

Manipulate tree sequences produced by SLiM.

python-tszip 0.3.0
Propagated dependencies: python-humanize@4.14.0 python-numcodecs@0.13.1 python-numpy@1.26.4 python-tskit@1.0.1 python-zarr@2.18.7
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/tskit-dev/tszip
Licenses: Expat
Build system: pyproject
Synopsis: Compression utilities for tree sequences
Description:

Compression utilities for tree sequences.

python-tscompare 0.2
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tscompare
Licenses: Expat
Build system: pyproject
Synopsis: Utilities for comparing tree sequences
Description:

Utilities for comparing tree sequences

python-gaiapy 0.1.2
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page:
Licenses: Expat
Build system: pyproject
Synopsis: Geographic Ancestry Inference Algorithm - Python implementation (continuous space parsimony methods)
Description:

Geographic Ancestry Inference Algorithm - Python implementation (continuous space parsimony methods).

python-tsbrowse 0.0.3
Propagated dependencies: python-click@8.1.8 python-daiquiri@3.0.1 python-datashader@0.18.1 python-hvplot@0.12.1 python-matplotlib@3.8.2 python-panel@1.6.1 python-tskit@1.0.1 python-tszip@0.3.0
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tsbrowse/
Licenses: Expat
Build system: pyproject
Synopsis: Webapp to view and visualise the information structure in tskit ARGs
Description:

Webapp to view and visualise the information structure in tskit ARGs

python-sc2ts 1.0.1
Propagated dependencies: python-biotite@1.5.0 python-click@8.1.8 python-humanize@4.14.0 python-numba@0.61.0 python-pandas@2.2.3 python-pyfaidx@0.7.2.1 python-scipy@1.12.0 python-tomli@2.2.1 python-tqdm@4.67.1 python-tskit@1.0.1 python-tsinfer@0.5.0 python-tszip@0.3.0 python-zarr@2.18.7
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/sc2ts
Licenses: GPL 3
Build system: pyproject
Synopsis: Infer ARGs for SARS-Cov2 in tskit format
Description:

Infer ARGs for SARS-Cov2 in tskit format.

python-tstrait 0.1.1
Propagated dependencies: python-numba@0.61.0 python-numpy@1.26.4 python-pandas@2.2.3 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tstrait/
Licenses: Expat
Build system: pyproject
Synopsis: Quantitative trait simulation of tree sequence data
Description:

Quantitative trait simulation of tree sequence data

python-arg-lmm 0.1.1
Propagated dependencies: python-arg-needle-lib@1.2.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://github.com/PalamaraLab/arg-lmm
Licenses:
Build system: pyproject
Synopsis: Efficient complex trait analyses from ARG
Description:

Efficient complex trait analyses from ARG.

python-tsdate 0.2.5
Propagated dependencies: python-appdirs@1.4.4 python-mpmath@1.3.0 python-numba@0.61.0 python-numpy@1.26.4 python-scipy@1.12.0 python-tqdm@4.67.1 python-tskit@1.0.1
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: http://pypi.python.org/pypi/tsdate
Licenses: Expat
Build system: pyproject
Synopsis: Infer node ages from a tree sequence topology.
Description:

Infer node ages from a tree sequence topology.

python-tskit 1.0.1
Propagated dependencies: python-jsonschema@4.23.0 python-numpy@1.26.4
Channel: guix-arg
Location: guix-arg/packages/python-arg.scm (guix-arg packages python-arg)
Home page: https://tskit.dev/tskit
Licenses: Expat
Build system: pyproject
Synopsis: The tree sequence toolkit.
Description:

The tree sequence toolkit.

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Total results: 65