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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

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r-bsgenome-tguttata-ucsc-taegut2 1.4.2
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Tguttata.UCSC.taeGut2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Taeniopygia guttata (UCSC version taeGut2)
Description:

Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in Biostrings objects.

r-bobafit 1.14.0
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.6.0 r-plyranges@1.30.1 r-nbclust@3.0.1 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-ggforce@0.5.0 r-ggbio@1.58.0 r-genomicranges@1.62.0 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://github.com/andrea-poletti-unibo/BOBaFIT
Licenses: GPL 3+
Build system: r
Synopsis: Refitting diploid region profiles using a clustering procedure
Description:

This package provides a method to refit and correct the diploid region in copy number profiles. It uses a clustering algorithm to identify pathology-specific normal (diploid) chromosomes and then use their copy number signal to refit the whole profile. The package is composed by three functions: DRrefit (the main function), ComputeNormalChromosome and PlotCluster.

r-bsgenome-ppaniscus-ucsc-panpan2 1.4.3
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Ppaniscus.UCSC.panPan2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Pan paniscus (UCSC version panPan2)
Description:

Full genome sequences for Pan paniscus (Bonobo) as provided by UCSC (panPan2, Dec. 2015) and stored in Biostrings objects.

r-bsgenome-btaurus-ucsc-bostau3-masked 1.3.99
Propagated dependencies: r-bsgenome-btaurus-ucsc-bostau3@1.4.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Btaurus.UCSC.bosTau3.masked
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full masked genome sequences for Bos taurus (UCSC version bosTau3)
Description:

Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-biomartgogenesets 0.99.11
Propagated dependencies: r-s4vectors@0.48.0 r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://github.com/jokergoo/BioMartGOGeneSets
Licenses: Expat
Build system: r
Synopsis: Gene Ontology Gene Sets from BioMart
Description:

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

r-bsgenome-btaurus-ucsc-bostau9-masked 1.4.4
Propagated dependencies: r-bsgenome-btaurus-ucsc-bostau9@1.4.2 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Btaurus.UCSC.bosTau9.masked
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full masked genome sequences for Bos taurus (UCSC version bosTau9)
Description:

Full genome sequences for Bos taurus (Cow) as provided by UCSC (genome bosTau9) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bloodgen3module 1.18.0
Propagated dependencies: r-v8@8.0.1 r-testthat@3.3.0 r-summarizedexperiment@1.40.0 r-reshape2@1.4.5 r-randomcolor@1.1.0.1 r-preprocesscore@1.72.0 r-matrixstats@1.5.0 r-limma@3.66.0 r-gtools@3.9.5 r-ggplot2@4.0.1 r-experimenthub@3.0.0 r-complexheatmap@2.26.0 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BloodGen3Module
Licenses: GPL 2
Build system: r
Synopsis: This R package for performing module repertoire analyses and generating fingerprint representations
Description:

The BloodGen3Module package provides functions for R user performing module repertoire analyses and generating fingerprint representations. Functions can perform group comparison or individual sample analysis and visualization by fingerprint grid plot or fingerprint heatmap. Module repertoire analyses typically involve determining the percentage of the constitutive genes for each module that are significantly increased or decreased. As we describe in details;https://www.biorxiv.org/content/10.1101/525709v2 and https://pubmed.ncbi.nlm.nih.gov/33624743/, the results of module repertoire analyses can be represented in a fingerprint format, where red and blue spots indicate increases or decreases in module activity. These spots are subsequently represented either on a grid, with each position being assigned to a given module, or in a heatmap where the samples are arranged in columns and the modules in rows.

r-bsgenome-mmulatta-ucsc-rhemac3-masked 1.3.99
Propagated dependencies: r-bsgenome-mmulatta-ucsc-rhemac3@1.4.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Mmulatta.UCSC.rheMac3.masked
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full masked genome sequences for Macaca mulatta (UCSC version rheMac3)
Description:

Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmulatta.UCSC.rheMac3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bsgenome-mfascicularis-ncbi-5-0 1.4.2
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Mfascicularis.NCBI.5.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Macaca fascicularis (Macaca_fascicularis_5.0)
Description:

Full genome sequences for Macaca fascicularis (long-tailed macaque) as provided by NCBI (Macaca_fascicularis_5.0, 2013-06-12) and stored in Biostrings objects.

r-bsgenome-amellifera-beebase-assembly4 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Amellifera.BeeBase.assembly4
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Apis mellifera (BeeBase assembly4)
Description:

iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.

r-bronchialil13 1.48.0
Propagated dependencies: r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: http://www.biostat.harvard.edu/~carey
Licenses: GPL 2
Build system: r
Synopsis: time course experiment involving il13
Description:

derived from CNMC (pepr.cnmcresearch.org) http://pepr.cnmcresearch.org/browse.do?action=list_prj_exp&projectId=95 Human Bronchial Cell line A549.

r-bsgenome-btaurus-ucsc-bostau3 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Btaurus.UCSC.bosTau3
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Bos taurus (UCSC version bosTau3)
Description:

Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.

r-bsgenome-hsapiens-ucsc-hg18 1.3.1000
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg18
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Homo sapiens (UCSC version hg18)
Description:

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.

r-bugsigdbr 1.16.2
Propagated dependencies: r-vroom@1.6.6 r-biocfilecache@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://github.com/waldronlab/bugsigdbr
Licenses: GPL 3
Build system: r
Synopsis: R-side access to published microbial signatures from BugSigDB
Description:

The bugsigdbr package implements convenient access to bugsigdb.org from within R/Bioconductor. The goal of the package is to facilitate import of BugSigDB data into R/Bioconductor, provide utilities for extracting microbe signatures, and enable export of the extracted signatures to plain text files in standard file formats such as GMT.

r-bsgenome-btaurus-ucsc-bostau6 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Btaurus.UCSC.bosTau6
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Bos taurus (UCSC version bosTau6)
Description:

Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.

r-bovine-db0 3.22.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/bovine.db0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Base Level Annotation databases for bovine
Description:

Base annotation databases for bovine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

r-bsgenome-ggallus-ucsc-galgal5 1.4.2
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Ggallus.UCSC.galGal5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Gallus gallus (UCSC version galGal5)
Description:

Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal5, Dec. 2015) and stored in Biostrings objects.

r-bsgenome-celegans-ucsc-ce2 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Celegans.UCSC.ce2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Caenorhabditis elegans (UCSC version ce2)
Description:

Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.

r-biseq 1.50.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-lokern@1.1-12 r-iranges@2.44.0 r-globaltest@5.64.0 r-genomicranges@1.62.0 r-formula@1.2-5 r-biocgenerics@0.56.0 r-biobase@2.70.0 r-betareg@3.2-4
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BiSeq
Licenses: LGPL 3
Build system: r
Synopsis: Processing and analyzing bisulfite sequencing data
Description:

The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.

r-crisprshiny 1.6.0
Propagated dependencies: r-waiter@0.2.5-1.927501b r-shinyjs@2.1.0 r-shinybs@0.61.1 r-shiny@1.11.1 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-pwalign@1.6.0 r-htmlwidgets@1.6.4 r-dt@0.34.0 r-crisprviz@1.12.0 r-crisprscore@1.14.0 r-crisprdesign@1.12.0 r-crisprbase@1.14.0 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://github.com/crisprVerse/crisprShiny
Licenses: Expat
Build system: r
Synopsis: Exploring curated CRISPR gRNAs via Shiny
Description:

This package provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.

r-calm 1.24.0
Propagated dependencies: r-mgcv@1.9-4
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://bioconductor.org/packages/calm
Licenses: FSDG-compatible
Build system: r
Synopsis: Covariate Assisted Large-scale Multiple testing
Description:

Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.

r-cytomem 1.14.0
Propagated dependencies: r-matrixstats@1.5.0 r-gplots@3.2.0 r-flowcore@2.22.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://github.com/cytolab/cytoMEM
Licenses: GPL 3
Build system: r
Synopsis: Marker Enrichment Modeling (MEM)
Description:

MEM, Marker Enrichment Modeling, automatically generates and displays quantitative labels for cell populations that have been identified from single-cell data. The input for MEM is a dataset that has pre-clustered or pre-gated populations with cells in rows and features in columns. Labels convey a list of measured features and the features levels of relative enrichment on each population. MEM can be applied to a wide variety of data types and can compare between MEM labels from flow cytometry, mass cytometry, single cell RNA-seq, and spectral flow cytometry using RMSD.

r-cll 1.50.0
Propagated dependencies: r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://bioconductor.org/packages/CLL
Licenses: LGPL 2.0+
Build system: r
Synopsis: Package for CLL Gene Expression Data
Description:

The CLL package contains the chronic lymphocytic leukemia (CLL) gene expression data. The CLL data had 24 samples that were either classified as progressive or stable in regards to disease progression. The data came from Dr. Sabina Chiaretti at Division of Hematology, Department of Cellular Biotechnologies and Hematology, University La Sapienza, Rome, Italy and Dr. Jerome Ritz at Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.

r-clariomshumantranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://bioconductor.org/packages/clariomshumantranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster)
Description:

Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster) assembled using data from public repositories.

Total results: 2911