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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-gbscleanr 2.4.4
Propagated dependencies: r-tidyr@1.3.1 r-seqarray@1.50.0 r-rcppparallel@5.1.11-1 r-rcpp@1.1.0 r-ggplot2@4.0.1 r-gdsfmt@1.46.0 r-expm@1.0-0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://github.com/tomoyukif/GBScleanR
Licenses: FSDG-compatible
Build system: r
Synopsis: Error correction tool for noisy genotyping by sequencing (GBS) data
Description:

GBScleanR is a package for quality check, filtering, and error correction of genotype data derived from next generation sequcener (NGS) based genotyping platforms. GBScleanR takes Variant Call Format (VCF) file as input. The main function of this package is `estGeno()` which estimates the true genotypes of samples from given read counts for genotype markers using a hidden Markov model with incorporating uneven observation ratio of allelic reads. This implementation gives robust genotype estimation even in noisy genotype data usually observed in Genotyping-By-Sequnencing (GBS) and similar methods, e.g. RADseq. The current implementation accepts genotype data of a diploid population at any generation of multi-parental cross, e.g. biparental F2 from inbred parents, biparental F2 from outbred parents, and 8-way recombinant inbred lines (8-way RILs) which can be refered to as MAGIC population.

r-geuvadistranscriptexpr 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://bioconductor.org/packages/GeuvadisTranscriptExpr
Licenses: GPL 3+
Build system: r
Synopsis: Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project
Description:

This package provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.

r-gmoviz 1.22.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rsamtools@2.26.0 r-pracma@2.4.6 r-iranges@2.44.0 r-gridbase@0.4-7 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-genomicalignments@1.46.0 r-complexheatmap@2.26.0 r-colorspace@2.1-2 r-circlize@0.4.16 r-biostrings@2.78.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://bioconductor.org/packages/gmoviz
Licenses: GPL 3
Build system: r
Synopsis: Seamless visualization of complex genomic variations in GMOs and edited cell lines
Description:

Genetically modified organisms (GMOs) and cell lines are widely used models in all kinds of biological research. As part of characterising these models, DNA sequencing technology and bioinformatics analyses are used systematically to study their genomes. Therefore, large volumes of data are generated and various algorithms are applied to analyse this data, which introduces a challenge on representing all findings in an informative and concise manner. `gmoviz` provides users with an easy way to visualise and facilitate the explanation of complex genomic editing events on a larger, biologically-relevant scale.

r-htrat230pmcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pmcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htrat230pmcdf
Description:

This package provides a package containing an environment representing the HT_Rat230_PM.cdf file.

r-hugene11sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene11sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster)
Description:

Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories.

r-hgu133a2-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133a2.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)
Description:

Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2) assembled using data from public repositories.

r-homosapiendee2cellscore 1.6.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-rtsne@0.17 r-matrixgenerics@1.22.0 r-getdee2@1.20.0 r-experimenthub@3.0.0 r-deseq2@1.50.2 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/homosapienDEE2CellScore
Licenses: GPL 3+
Build system: r
Synopsis: Example Data Package for CellScore
Description:

This is a data package for normalised homosapien data downloaded from DEE2. The package both downloads, normalises, and filters the data, and provides a way to access the data from a canonical store without needing local processing. This package was built as a way to generate and store canonical test data for CellScore.

r-hs25kresogen-db 2.5.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hs25kresogen.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)
Description:

RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories.

r-hgu133plus2barcodevecs 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2barcodevecs
Licenses: GPL 2+
Build system: r
Synopsis: hgu133plus2 data for barcode
Description:

Data used by the barcode package for microarrays of type hgu133plus2.

r-harmandata 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinformatics.csiro.au/harman/
Licenses: GPL 3
Build system: r
Synopsis: Data for the Harman package
Description:

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

r-hu35ksubdprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubdprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubd
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubD\_probe\_tab.

r-hgu95cprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95cprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95c
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95C\_probe\_tab.

r-hgu219cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu219cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu219cdf
Description:

This package provides a package containing an environment representing the HG-U219.cdf file.

r-hcg110cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hcg110cdf
Description:

This package provides a package containing an environment representing the HC_G110.cdf file.

r-hu35ksubdcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubdcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu35ksubdcdf
Description:

This package provides a package containing an environment representing the Hu35KsubD.CDF file.

r-hu6800cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800cdf
Description:

This package provides a package containing an environment representing the Hu6800.CDF file.

r-hgu133abarcodevecs 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133abarcodevecs
Licenses: GPL 2+
Build system: r
Synopsis: hgu133a data for barcode
Description:

Data used by the barcode package for microarrays of type hgu133a.

r-hapmap100khind 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmap100khind
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap 100K HIND Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hgu133afrmavecs 1.5.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133afrmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type hgu133a
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-hthgu133acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hthgu133acdf
Description:

This package provides a package containing an environment representing the HT_HG-U133A.cdf file.

r-hmdbquery 1.30.0
Propagated dependencies: r-xml@3.99-0.20 r-s4vectors@0.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hmdbQuery
Licenses: Artistic License 2.0
Build system: r
Synopsis: utilities for exploration of human metabolome database
Description:

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

r-hthgu133pluspmcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133pluspmcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hthgu133pluspmcdf
Description:

This package provides a package containing an environment representing the HT_HG-U133_Plus_PM.CDF file.

r-hgu219-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu219.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Human Genome 219 Plate annotation data (chip hgu219)
Description:

Affymetrix Human Genome 219 Plate annotation data (chip hgu219) assembled using data from public repositories.

r-hgu133bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\_probe\_tab.

Total results: 2909