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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-htmg430aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htmg430a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430A\_probe\_tab.

r-hguatlas13k-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hguatlas13k.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k)
Description:

Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories.

r-hcatonsildata 1.8.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-spatialexperiment@1.20.0 r-singlecellexperiment@1.32.0 r-s4vectors@0.48.0 r-rmarkdown@2.30 r-htmltools@0.5.8.1 r-hdf5array@1.38.0 r-experimenthub@3.0.0 r-base64enc@0.1-3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/massonix/HCATonsilData
Licenses: Expat
Build system: r
Synopsis: Provide programmatic access to the tonsil cell atlas datasets
Description:

This package provides access to the scRNA-seq, scATAC-seq, multiome, CITE-seq and spatial transcriptomics (Visium) data generated by the tonsil cell atlas in the context of the Human Cell Atlas (HCA). The data is provided via the Bioconductor project in the form of SingleCellExperiments. Additionally, information on the whole compendium of identified cell types is provided in form of a glossary.

r-hapmap500knsp 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmap500knsp
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap 500K NSP Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hopach 2.70.0
Propagated dependencies: r-cluster@2.1.8.1 r-biocgenerics@0.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.stat.berkeley.edu/~laan/
Licenses: GPL 2+
Build system: r
Synopsis: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
Description:

The HOPACH clustering algorithm builds a hierarchical tree of clusters by recursively partitioning a data set, while ordering and possibly collapsing clusters at each level. The algorithm uses the Mean/Median Split Silhouette (MSS) criteria to identify the level of the tree with maximally homogeneous clusters. It also runs the tree down to produce a final ordered list of the elements. The non-parametric bootstrap allows one to estimate the probability that each element belongs to each cluster (fuzzy clustering).

r-huexexonprobesetlocationhg18 0.0.2
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuExExonProbesetLocationHg18
Licenses: LGPL 2.0+
Build system: r
Synopsis: Exon-level probeset chromosome location for microarrays of type HuEx
Description:

This package was automatically created by package AnnotationDbi version 1.8.0. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg18.

r-huexexonprobesetlocationhg19 0.0.3
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuExExonProbesetLocationHg19
Licenses: LGPL 2.0+
Build system: r
Synopsis: Exon-level probeset chromosome location for microarrays of type HuEx
Description:

This package was automatically created by package AnnotationDbi version 1.11.8. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg19.

r-hgu95b-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HG_U95B Array annotation data (chip hgu95b)
Description:

Affymetrix Affymetrix HG_U95B Array annotation data (chip hgu95b) assembled using data from public repositories.

r-human660quadv1acrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human660quadv1aCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 660kQuad arrays using the crlmm package.

r-hgfocuscdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgfocuscdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgfocuscdf
Description:

This package provides a package containing an environment representing the HG-Focus.CDF file.

r-hgu133plus2cellscore 1.30.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2CellScore
Licenses: GPL 3
Build system: r
Synopsis: CellScore Standard Cell Types Expression Dataset [hgu133plus2]
Description:

The CellScore Standard Dataset contains expression data from a wide variety of human cells and tissues, which should be used as standard cell types in the calculation of the CellScore. All data was curated from public databases such as Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/) or ArrayExpress (https://www.ebi.ac.uk/arrayexpress/). This standard dataset only contains data from the Affymetrix GeneChip Human Genome U133 Plus 2.0 microarrays. Samples were manually annotated using the database information or consulting the publications in which the datasets originated. The sample annotations are stored in the phenoData slot of the expressionSet object. Raw data (CEL files) were processed with the affy package to generate present/absent calls (mas5calls) and background-subtracted values, which were then normalized by the R-package yugene to yield the final expression values for the standard expression matrix. The annotation table for the microarray was retrieved from the BioC annotation package hgu133plus2. All data are stored in an expressionSet object.

r-hugene11stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene11stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene11 annotation data (chip hugene11stprobeset)
Description:

Affymetrix hugene11 annotation data (chip hugene11stprobeset) assembled using data from public repositories.

r-heron 1.8.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-spdep@1.4-1 r-s4vectors@0.48.0 r-metap@1.12 r-matrixstats@1.5.0 r-matrix@1.7-4 r-limma@3.66.0 r-iranges@2.44.0 r-harmonicmeanp@3.0.1 r-genomicranges@1.62.0 r-data-table@1.17.8 r-cluster@2.1.8.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/Ong-Research/HERON
Licenses: GPL 3+
Build system: r
Synopsis: Hierarchical Epitope pROtein biNding
Description:

HERON is a software package for analyzing peptide binding array data. In addition to identifying significant binding probes, HERON also provides functions for finding epitopes (string of consecutive peptides within a protein). HERON also calculates significance on the probe, epitope, and protein level by employing meta p-value methods. HERON is designed for obtaining calls on the sample level and calculates fractions of hits for different conditions.

r-hthgu133b-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b)
Description:

Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) assembled using data from public repositories.

r-hgu95bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu95bcdf
Description:

This package provides a package containing an environment representing the HG_U95B.CDF file.

r-hugene10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)
Description:

Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster) assembled using data from public repositories.

r-humanaffydata 1.36.0
Propagated dependencies: r-experimenthub@3.0.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HumanAffyData
Licenses: Artistic License 2.0
Build system: r
Synopsis: GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects
Description:

Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

r-hubmapr 1.4.0
Propagated dependencies: r-whisker@0.4.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-rlang@1.1.6 r-rjsoncons@1.3.2 r-purrr@1.2.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://christinehou11.github.io/HuBMAPR/
Licenses: Artistic License 2.0
Build system: r
Synopsis: Interface to 'HuBMAP'
Description:

HuBMAP provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.

r-hgug4111a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4111a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Human 1B annotation data (chip hgug4111a)
Description:

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

r-hgu133a2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133a2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133a2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_2\_probe\_tab.

r-htrat230pm-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pm.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm)
Description:

Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm) assembled using data from public repositories.

r-hthgu133pluspm-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133pluspm.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133_Plus_PM Array annotation data (chip hthgu133pluspm)
Description:

Affymetrix Affymetrix HT_HG-U133_Plus_PM Array annotation data (chip hthgu133pluspm) assembled using data from public repositories.

r-hugene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hugene10stv1cdf
Description:

This package provides a package containing an environment representing the HuGene-1_0-st-v1.cdf file.

r-hu6800-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800)
Description:

Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800) assembled using data from public repositories.

Total results: 2909