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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-hgu133plus2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133plus2cdf
Description:

This package provides a package containing an environment representing the HG-U133_Plus_2.cdf file.

r-humanomni5quadv1bcrlmm 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomni5quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni5 Quad arrays using the crlmm package.

r-hgu133plus2barcodevecs 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2barcodevecs
Licenses: GPL 2+
Build system: r
Synopsis: hgu133plus2 data for barcode
Description:

Data used by the barcode package for microarrays of type hgu133plus2.

r-hiiragi2013 1.46.0
Propagated dependencies: r-xtable@1.8-4 r-rcolorbrewer@1.1-3 r-mouse4302-db@3.13.0 r-mass@7.3-65 r-latticeextra@0.6-31 r-lattice@0.22-7 r-keggrest@1.50.0 r-gtools@3.9.5 r-gplots@3.2.0 r-geneplotter@1.88.0 r-genefilter@1.92.0 r-cluster@2.1.8.1 r-clue@0.3-66 r-boot@1.3-32 r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hiiragi2013
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.".

r-hgug4100a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4100a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a)
Description:

Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories.

r-hivcdnavantwout03 1.50.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://expression.microslu.washington.edu/expression/vantwoutjvi2002.html
Licenses: GPL 2+
Build system: r
Synopsis: T cell line infections with HIV-1 LAI (BRU)
Description:

The expression levels of approximately 4600 cellular RNA transcripts were assessed in CD4+ T cell lines at different times after infection with HIV-1BRU using DNA microarrays. This data corresponds to the first block of a 12 block array image (001030_08_1.GEL) in the first data set (2000095918 A) in the first experiment (CEM LAI vs HI-LAI 24hr). There are two data sets, which are part of a dye-swap experiment with replicates, representing the Cy3 (green) absorption intensities for channel 1 (hiv1raw) and the Cy5 (red) absorption intensities for channel 2 (hiv2raw).

r-hapmap500knsp 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmap500knsp
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap 500K NSP Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hgu95dcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95dcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu95dcdf
Description:

This package provides a package containing an environment representing the HG_U95D.CDF file.

r-hu6800probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu6800
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu6800\_probe\_tab.

r-hgu133plus2frmavecs 1.5.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type hgu133plus2
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-hgu133atagprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133atagprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133atag
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_tag\_probe\_tab.

r-hu6800subdcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800subdcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800subdcdf
Description:

This package provides a package containing an environment representing the Hu6800subD.CDF file.

r-h20kcod-db 3.4.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/h20kcod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod)
Description:

Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod) assembled using data from public repositories.

r-hgu133bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\_probe\_tab.

r-hugene11stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene11stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene11 annotation data (chip hugene11stprobeset)
Description:

Affymetrix hugene11 annotation data (chip hugene11stprobeset) assembled using data from public repositories.

r-harman 1.38.0
Propagated dependencies: r-rcpp@1.1.0 r-matrixstats@1.5.0 r-ckmeans-1d-dp@4.3.5
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinformatics.csiro.au/harman/
Licenses: FSDG-compatible
Build system: r
Synopsis: The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Description:

Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.

r-hgu133a2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133a2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133a2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_2\_probe\_tab.

r-hs25kresogen-db 2.5.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hs25kresogen.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)
Description:

RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories.

r-hireewas 1.28.0
Propagated dependencies: r-quadprog@1.5-8 r-gplots@3.2.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HIREewas
Licenses: GPL 2+
Build system: r
Synopsis: Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies
Description:

In epigenome-wide association studies, the measured signals for each sample are a mixture of methylation profiles from different cell types. The current approaches to the association detection only claim whether a cytosine-phosphate-guanine (CpG) site is associated with the phenotype or not, but they cannot determine the cell type in which the risk-CpG site is affected by the phenotype. We propose a solid statistical method, HIgh REsolution (HIRE), which not only substantially improves the power of association detection at the aggregated level as compared to the existing methods but also enables the detection of risk-CpG sites for individual cell types. The "HIREewas" R package is to implement HIRE model in R.

r-hapmapsnp6 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmapsnp6
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap SNP 6.0 Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hd2013sgi 1.50.0
Propagated dependencies: r-vcd@1.4-13 r-splots@1.76.0 r-rcolorbrewer@1.1-3 r-lsd@4.1-0 r-limma@3.66.0 r-gplots@3.2.0 r-geneplotter@1.88.0 r-ebimage@4.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HD2013SGI
Licenses: Artistic License 2.0
Build system: r
Synopsis: Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

r-htrat230pm-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pm.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm)
Description:

Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm) assembled using data from public repositories.

r-healthycontrolspresencechecker 1.14.0
Propagated dependencies: r-xml2@1.5.0 r-magrittr@2.0.4 r-geoquery@2.78.0 r-geneexpressionfromgeo@1.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/davidechicco/healthyControlsPresenceChecker
Licenses: GPL 3
Build system: r
Synopsis: Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not
Description:

This package provides a function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

r-huexexonprobesetlocation 1.15.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuExExonProbesetLocation
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type HuEx
Description:

This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.

Total results: 2911