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r-healthycontrolspresencechecker 1.14.0
Propagated dependencies: r-xml2@1.5.0 r-magrittr@2.0.4 r-geoquery@2.78.0 r-geneexpressionfromgeo@1.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/davidechicco/healthyControlsPresenceChecker
Licenses: GPL 3
Build system: r
Synopsis: Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not
Description:

This package provides a function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

r-hicdatahumanimr90 1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HiCDataHumanIMR90
Licenses: GPL 3
Build system: r
Synopsis: Human IMR90 Fibroblast HiC data from Dixon et al. 2012
Description:

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

r-hdtd 1.44.0
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/AnestisTouloumis/HDTD
Licenses: GPL 3
Build system: r
Synopsis: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Description:

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

r-humanomni5quadv1bcrlmm 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomni5quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni5 Quad arrays using the crlmm package.

r-hi16cod-db 3.4.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hi16cod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod)
Description:

Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories.

r-hugene11sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene11sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster)
Description:

Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories.

r-hu35ksubc-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubc.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Hu35KsubC Array annotation data (chip hu35ksubc)
Description:

Affymetrix Affymetrix Hu35KsubC Array annotation data (chip hu35ksubc) assembled using data from public repositories.

r-hgu95eprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95eprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95e
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95E\_probe\_tab.

r-hgu133bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\_probe\_tab.

r-hopach 2.70.0
Propagated dependencies: r-cluster@2.1.8.1 r-biocgenerics@0.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.stat.berkeley.edu/~laan/
Licenses: GPL 2+
Build system: r
Synopsis: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
Description:

The HOPACH clustering algorithm builds a hierarchical tree of clusters by recursively partitioning a data set, while ordering and possibly collapsing clusters at each level. The algorithm uses the Mean/Median Split Silhouette (MSS) criteria to identify the level of the tree with maximally homogeneous clusters. It also runs the tree down to produce a final ordered list of the elements. The non-parametric bootstrap allows one to estimate the probability that each element belongs to each cluster (fuzzy clustering).

r-humanaffydata 1.36.0
Propagated dependencies: r-experimenthub@3.0.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HumanAffyData
Licenses: Artistic License 2.0
Build system: r
Synopsis: GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects
Description:

Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

r-hgu133acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133acdf
Description:

This package provides a package containing an environment representing the HG-U133A.cdf file.

r-hoodscanr 1.8.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-spatialexperiment@1.20.0 r-scico@1.5.0 r-rmarkdown@2.30 r-rlang@1.1.6 r-rcpp@1.1.0 r-rann@2.6.2 r-knitr@1.50 r-ggplot2@4.0.1 r-complexheatmap@2.26.0 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/DavisLaboratory/hoodscanR
Licenses: FSDG-compatible
Build system: r
Synopsis: Spatial cellular neighbourhood scanning in R
Description:

hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based cell clustering.

r-hgu219-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu219.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Human Genome 219 Plate annotation data (chip hgu219)
Description:

Affymetrix Human Genome 219 Plate annotation data (chip hgu219) assembled using data from public repositories.

r-hmp2data 1.24.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-readr@2.1.6 r-phyloseq@1.54.0 r-multiassayexperiment@1.36.1 r-magrittr@2.0.4 r-knitr@1.50 r-kableextra@1.4.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-assertthat@0.2.1 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/jstansfield0/HMP2Data
Licenses: Artistic License 2.0
Build system: r
Synopsis: 16s rRNA sequencing data from the Human Microbiome Project 2
Description:

HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.

r-highlyreplicatedrnaseq 1.22.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/const-ae/HighlyReplicatedRNASeq
Licenses: Expat
Build system: r
Synopsis: Collection of Bulk RNA-Seq Experiments With Many Replicates
Description:

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

r-hibed 1.8.0
Propagated dependencies: r-tibble@3.3.0 r-summarizedexperiment@1.40.0 r-minfi@1.56.0 r-flowsorted-dlpfc-450k@1.46.0 r-flowsorted-blood-epic@2.14.0 r-dplyr@1.1.4 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/SalasLab/HiBED
Licenses: GPL 3
Build system: r
Synopsis: HiBED
Description:

Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation. The HiBED deconvolution estimates proportions up to 7 cell types (GABAergic neurons, glutamatergic neurons, astrocytes, microglial cells, oligodendrocytes, endothelial cells, and stromal cells) in bulk brain tissues.

r-hgu133bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133bcdf
Description:

This package provides a package containing an environment representing the HG-U133B.cdf file.

r-hu35ksubccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu35ksubccdf
Description:

This package provides a package containing an environment representing the Hu35KsubC.CDF file.

r-holofoodr 1.4.0
Propagated dependencies: r-treesummarizedexperiment@2.18.0 r-summarizedexperiment@1.40.0 r-stringi@1.8.7 r-s4vectors@0.48.0 r-multiassayexperiment@1.36.1 r-jsonlite@2.0.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/EBI-Metagenomics/HoloFoodR
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: R interface to EBI HoloFood resource
Description:

Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.

r-hgu219probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu219probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu219
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U219\_probe\_tab.

r-hthgu133afrmavecs 1.3.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133afrmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type hthgu133a
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-hs25kresogen-db 2.5.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hs25kresogen.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)
Description:

RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories.

r-hugene10stv1probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene10stv1probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hugene10stv1
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\_0-st-v1\_probe\_tab.

Total results: 2909