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\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-hgu133bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133bcdf
Description:

This package provides a package containing an environment representing the HG-U133B.cdf file.

r-hoodscanr 1.10.0
Propagated dependencies: r-summarizedexperiment@1.42.0 r-spatialexperiment@1.22.0 r-scico@1.5.0 r-rmarkdown@2.31 r-rlang@1.2.0 r-rcpp@1.1.1-1.1 r-rann@2.6.2 r-knitr@1.51 r-ggplot2@4.0.3 r-complexheatmap@2.28.0 r-circlize@0.4.18
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/DavisLaboratory/hoodscanR
Licenses: FSDG-compatible
Build system: r
Synopsis: Spatial cellular neighbourhood scanning in R
Description:

hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based cell clustering.

r-healthyflowdata 1.50.0
Propagated dependencies: r-flowcore@2.24.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/healthyFlowData
Licenses: Artistic License 2.0
Build system: r
Synopsis: Healthy dataset used by the flowMatch package
Description:

This package provides a healthy dataset with 20 flow cytometry samples used by the flowMatch package.

r-htmg430acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htmg430acdf
Description:

This package provides a package containing an environment representing the HT_MG-430A.cdf file.

r-hi16cod-db 3.4.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hi16cod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod)
Description:

Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories.

r-huex10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/huex10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix huex10 annotation data (chip huex10sttranscriptcluster)
Description:

Affymetrix huex10 annotation data (chip huex10sttranscriptcluster) assembled using data from public repositories.

r-hta20probeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hta20probeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hta20 annotation data (chip hta20probeset)
Description:

Affymetrix hta20 annotation data (chip hta20probeset) assembled using data from public repositories.

r-hs6ug171-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hs6UG171.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: package containing metadata for Hs6UG171 arrays
Description:

This package provides a package containing metadata for Hs6UG171 arrays assembled using data from public repositories.

r-hippo 1.24.0
Propagated dependencies: r-umap@0.2.10.0 r-singlecellexperiment@1.34.0 r-rtsne@0.17 r-rlang@1.2.0 r-reshape2@1.4.5 r-matrix@1.7-5 r-magrittr@2.0.5 r-irlba@2.3.7 r-gridextra@2.3 r-ggrepel@0.9.8 r-ggplot2@4.0.3 r-dplyr@1.2.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/tk382/HIPPO
Licenses: FSDG-compatible
Build system: r
Synopsis: Heterogeneity-Induced Pre-Processing tOol
Description:

For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.

r-hgu95bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95B\_probe\_tab.

r-harmandata 1.40.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinformatics.csiro.au/harman/
Licenses: GPL 3
Build system: r
Synopsis: Data for the Harman package
Description:

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

r-hu35ksubcprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubcprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubc
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubC\_probe\_tab.

r-htmg430bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htmg430bcdf
Description:

This package provides a package containing an environment representing the HT_MG-430B.cdf file.

r-hgfocuscdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgfocuscdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgfocuscdf
Description:

This package provides a package containing an environment representing the HG-Focus.CDF file.

r-holofoodr 1.6.0
Propagated dependencies: r-treesummarizedexperiment@2.20.0 r-summarizedexperiment@1.42.0 r-stringi@1.8.7 r-s4vectors@0.50.1 r-multiassayexperiment@1.38.0 r-jsonlite@2.0.0 r-httr2@1.2.2 r-dplyr@1.2.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/EBI-Metagenomics/HoloFoodR
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: R interface to EBI HoloFood resource
Description:

Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.

r-hgu133acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133acdf
Description:

This package provides a package containing an environment representing the HG-U133A.cdf file.

r-hthgu133plusa-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133plusa.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa)
Description:

Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa) assembled using data from public repositories.

r-hugene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hugene10stv1cdf
Description:

This package provides a package containing an environment representing the HuGene-1_0-st-v1.cdf file.

r-hgu95cprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95cprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95c
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95C\_probe\_tab.

r-hgug4111a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4111a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Human 1B annotation data (chip hgug4111a)
Description:

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

r-hiiragi2013 1.47.0
Propagated dependencies: r-xtable@1.8-8 r-rcolorbrewer@1.1-3 r-mouse4302-db@3.13.0 r-mass@7.3-65 r-latticeextra@0.6-31 r-lattice@0.22-9 r-keggrest@1.52.0 r-gtools@3.9.5 r-gplots@3.3.0 r-geneplotter@1.90.0 r-genefilter@1.94.0 r-cluster@2.1.8.2 r-clue@0.3-68 r-boot@1.3-32 r-biobase@2.72.0 r-affy@1.90.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hiiragi2013
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.".

r-human-db0 3.22.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human.db0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Base Level Annotation databases for human
Description:

Base annotation databases for human, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

r-h10kcod-db 3.4.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/h10kcod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod)
Description:

Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) assembled using data from public repositories.

r-healthycontrolspresencechecker 1.16.0
Propagated dependencies: r-xml2@1.5.2 r-magrittr@2.0.5 r-geoquery@2.80.0 r-geneexpressionfromgeo@1.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/davidechicco/healthyControlsPresenceChecker
Licenses: GPL 3
Build system: r
Synopsis: Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not
Description:

This package provides a function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

Page: 14344454647126
Total packages: 3017