_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-humanomni1quadv1bcrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomni1quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni1 Quad arrays using the crlmm package.

r-hiccompare 1.32.0
Propagated dependencies: r-s4vectors@0.48.0 r-rhdf5@2.54.0 r-pheatmap@1.0.13 r-mgcv@1.9-4 r-kernsmooth@2.23-26 r-iranges@2.44.0 r-interactionset@1.38.0 r-gtools@3.9.5 r-gridextra@2.3 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/dozmorovlab/HiCcompare
Licenses: Expat
Build system: r
Synopsis: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
Description:

HiCcompare provides functions for joint normalization and difference detection in multiple Hi-C datasets. HiCcompare operates on processed Hi-C data in the form of chromosome-specific chromatin interaction matrices. It accepts three-column tab-separated text files storing chromatin interaction matrices in a sparse matrix format which are available from several sources. HiCcompare is designed to give the user the ability to perform a comparative analysis on the 3-Dimensional structure of the genomes of cells in different biological states.`HiCcompare` differs from other packages that attempt to compare Hi-C data in that it works on processed data in chromatin interaction matrix format instead of pre-processed sequencing data. In addition, `HiCcompare` provides a non-parametric method for the joint normalization and removal of biases between two Hi-C datasets for the purpose of comparative analysis. `HiCcompare` also provides a simple yet robust method for detecting differences between Hi-C datasets.

r-htrat230pm-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htrat230pm.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm)
Description:

Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm) assembled using data from public repositories.

r-hmdbquery 1.30.0
Propagated dependencies: r-xml@3.99-0.20 r-s4vectors@0.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hmdbQuery
Licenses: Artistic License 2.0
Build system: r
Synopsis: utilities for exploration of human metabolome database
Description:

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

r-hgu133plus2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133plus2cdf
Description:

This package provides a package containing an environment representing the HG-U133_Plus_2.cdf file.

r-help 1.68.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HELP
Licenses: GPL 2+
Build system: r
Synopsis: Tools for HELP data analysis
Description:

The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.

r-hiiragi2013 1.46.0
Propagated dependencies: r-xtable@1.8-4 r-rcolorbrewer@1.1-3 r-mouse4302-db@3.13.0 r-mass@7.3-65 r-latticeextra@0.6-31 r-lattice@0.22-7 r-keggrest@1.50.0 r-gtools@3.9.5 r-gplots@3.2.0 r-geneplotter@1.88.0 r-genefilter@1.92.0 r-cluster@2.1.8.1 r-clue@0.3-66 r-boot@1.3-32 r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hiiragi2013
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.".

r-hgu95dcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95dcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu95dcdf
Description:

This package provides a package containing an environment representing the HG_U95D.CDF file.

r-hu6800subacdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800subacdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800subacdf
Description:

This package provides a package containing an environment representing the Hu6800subA.CDF file.

r-harmonizedtcgadata 1.32.0
Propagated dependencies: r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HarmonizedTCGAData
Licenses: GPL 3
Build system: r
Synopsis: Processed Harmonized TCGA Data of Five Selected Cancer Types
Description:

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

r-htratfocusprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htratfocusprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htratfocus
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat-Focus\_probe\_tab.

r-hcg110probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hcg110
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\_probe\_tab.

r-htmg430bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htmg430b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430B\_probe\_tab.

r-hem 1.82.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.healthsystem.virginia.edu/internet/hes/biostat/bioinformatics/
Licenses: GPL 2+
Build system: r
Synopsis: Heterogeneous error model for identification of differentially expressed genes under multiple conditions
Description:

This package fits heterogeneous error models for analysis of microarray data.

r-hicexperiment 1.10.0
Propagated dependencies: r-vroom@1.6.6 r-strawr@0.0.92 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rhdf5@2.54.0 r-matrix@1.7-4 r-iranges@2.44.0 r-interactionset@1.38.0 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-biocparallel@1.44.0 r-biocio@1.20.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/js2264/HiCExperiment
Licenses: Expat
Build system: r
Synopsis: Bioconductor class for interacting with Hi-C files in R
Description:

R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment` class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment` instances can be further investigated in R using the `HiContacts` analysis package.

r-hicdatalymphoblast 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HiCDataLymphoblast
Licenses: GPL 3
Build system: r
Synopsis: Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009
Description:

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

r-human610quadv1bcrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human610quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 610kQuad arrays using the crlmm package.

r-hpannot 1.1.1
Propagated dependencies: r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hpAnnot
Licenses: GPL 2
Build system: r
Synopsis: Anotation package for Hipathia package
Description:

Package containing example and annotation data for Hipathia package. Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway. Hipathia depends on this package to be functional.

r-hgu133plus2cellscore 1.30.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2CellScore
Licenses: GPL 3
Build system: r
Synopsis: CellScore Standard Cell Types Expression Dataset [hgu133plus2]
Description:

The CellScore Standard Dataset contains expression data from a wide variety of human cells and tissues, which should be used as standard cell types in the calculation of the CellScore. All data was curated from public databases such as Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/) or ArrayExpress (https://www.ebi.ac.uk/arrayexpress/). This standard dataset only contains data from the Affymetrix GeneChip Human Genome U133 Plus 2.0 microarrays. Samples were manually annotated using the database information or consulting the publications in which the datasets originated. The sample annotations are stored in the phenoData slot of the expressionSet object. Raw data (CEL files) were processed with the affy package to generate present/absent calls (mas5calls) and background-subtracted values, which were then normalized by the R-package yugene to yield the final expression values for the standard expression matrix. The annotation table for the microarray was retrieved from the BioC annotation package hgu133plus2. All data are stored in an expressionSet object.

r-hdxmsqc 1.6.0
Propagated dependencies: r-tidyr@1.3.1 r-spectra@1.20.0 r-s4vectors@0.48.0 r-qfeatures@1.20.0 r-mscoreutils@1.21.0 r-knitr@1.50 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-biocstyle@2.38.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/ococrook/hdxmsqc
Licenses: FSDG-compatible
Build system: r
Synopsis: An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Description:

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

r-heebodata 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HEEBOdata
Licenses: LGPL 2.0+
Build system: r
Synopsis: HEEBO set and HEEBO controls
Description:

R objects describing the HEEBO oligo set.

r-hu35ksubbcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubbcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu35ksubbcdf
Description:

This package provides a package containing an environment representing the Hu35KsubB.CDF file.

r-hicdcplus 1.18.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rlang@1.1.6 r-rcpp@1.1.0 r-r-utils@2.13.0 r-pscl@1.5.9 r-mass@7.3-65 r-iranges@2.44.0 r-interactionset@1.38.0 r-genomicranges@1.62.0 r-genomicinteractions@1.44.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-bbmle@1.0.25.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HiCDCPlus
Licenses: GPL 3
Build system: r
Synopsis: Hi-C Direct Caller Plus
Description:

Systematic 3D interaction calls and differential analysis for Hi-C and HiChIP. The HiC-DC+ (Hi-C/HiChIP direct caller plus) package enables principled statistical analysis of Hi-C and HiChIP data sets – including calling significant interactions within a single experiment and performing differential analysis between conditions given replicate experiments – to facilitate global integrative studies. HiC-DC+ estimates significant interactions in a Hi-C or HiChIP experiment directly from the raw contact matrix for each chromosome up to a specified genomic distance, binned by uniform genomic intervals or restriction enzyme fragments, by training a background model to account for random polymer ligation and systematic sources of read count variation.

r-htmg430pm-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430pm.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_MG-430_PM Array annotation data (chip htmg430pm)
Description:

Affymetrix Affymetrix HT_MG-430_PM Array annotation data (chip htmg430pm) assembled using data from public repositories.

Total results: 2909