_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-hicbricks 1.29.0
Propagated dependencies: r-viridis@0.6.5 r-tibble@3.3.1 r-stringr@1.6.0 r-seqinfo@1.2.0 r-scales@1.4.0 r-s4vectors@0.50.1 r-rhdf5@2.56.0 r-reshape2@1.4.5 r-readr@2.2.0 r-rcolorbrewer@1.1-3 r-r6@2.6.1 r-r-utils@2.13.0 r-jsonlite@2.0.0 r-iranges@2.46.0 r-ggplot2@4.0.3 r-genomicranges@1.64.0 r-digest@0.6.39 r-data-table@1.18.4 r-curl@7.1.0 r-biocparallel@1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HiCBricks
Licenses: Expat
Build system: r
Synopsis: Framework for Storing and Accessing Hi-C Data Through HDF Files
Description:

HiCBricks is a library designed for handling large high-resolution Hi-C datasets. Over the years, the Hi-C field has experienced a rapid increase in the size and complexity of datasets. HiCBricks is meant to overcome the challenges related to the analysis of such large datasets within the R environment. HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides an R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms. HiCBricks already incorporates example algorithms for calling domain boundaries and functions for high quality data visualization.

r-hi16cod-db 3.4.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hi16cod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod)
Description:

Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories.

r-hu6800subbcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800subbcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800subbcdf
Description:

This package provides a package containing an environment representing the Hu6800subB.CDF file.

r-hiiragi2013 1.47.0
Propagated dependencies: r-xtable@1.8-8 r-rcolorbrewer@1.1-3 r-mouse4302-db@3.13.0 r-mass@7.3-65 r-latticeextra@0.6-31 r-lattice@0.22-9 r-keggrest@1.52.0 r-gtools@3.9.5 r-gplots@3.3.0 r-geneplotter@1.90.0 r-genefilter@1.94.0 r-cluster@2.1.8.2 r-clue@0.3-68 r-boot@1.3-32 r-biobase@2.72.0 r-affy@1.90.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hiiragi2013
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.".

r-hapfabia 1.54.0
Propagated dependencies: r-fabia@2.58.0 r-biobase@2.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinf.jku.at/software/hapFabia/hapFabia.html
Licenses: LGPL 2.1+
Build system: r
Synopsis: hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
Description:

This package provides a package to identify very short IBD segments in large sequencing data by FABIA biclustering. Two haplotypes are identical by descent (IBD) if they share a segment that both inherited from a common ancestor. Current IBD methods reliably detect long IBD segments because many minor alleles in the segment are concordant between the two haplotypes. However, many cohort studies contain unrelated individuals which share only short IBD segments. This package provides software to identify short IBD segments in sequencing data. Knowledge of short IBD segments are relevant for phasing of genotyping data, association studies, and for population genetics, where they shed light on the evolutionary history of humans. The package supports VCF formats, is based on sparse matrix operations, and provides visualization of haplotype clusters in different formats.

r-hem 1.84.0
Propagated dependencies: r-biobase@2.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.healthsystem.virginia.edu/internet/hes/biostat/bioinformatics/
Licenses: GPL 2+
Build system: r
Synopsis: Heterogeneous error model for identification of differentially expressed genes under multiple conditions
Description:

This package fits heterogeneous error models for analysis of microarray data.

r-hpannot 1.1.3
Propagated dependencies: r-annotationhub@4.2.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hpAnnot
Licenses: GPL 2
Build system: r
Synopsis: Anotation package for Hipathia package
Description:

Package containing example and annotation data for Hipathia package. Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway. Hipathia depends on this package to be functional.

r-hugene10stv1probe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene10stv1probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hugene10stv1
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\_0-st-v1\_probe\_tab.

r-hcg110probe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hcg110
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\_probe\_tab.

r-hgu95dprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95dprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95d
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95D\_probe\_tab.

r-hspeccdf 0.99.1
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hspeccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hspeccdf
Description:

This package provides a package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.

r-hthgu133plusb-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133plusb.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb)
Description:

Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) assembled using data from public repositories.

r-htratfocus-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.23.0 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htratfocus.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus)
Description:

Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus) assembled using data from public repositories.

r-human370quadv3ccrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human370quadv3cCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 370kQuad arrays using the crlmm package.

r-hs6ug171-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hs6UG171.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: package containing metadata for Hs6UG171 arrays
Description:

This package provides a package containing metadata for Hs6UG171 arrays assembled using data from public repositories.

r-hoodscanr 1.10.0
Propagated dependencies: r-summarizedexperiment@1.42.0 r-spatialexperiment@1.22.0 r-scico@1.5.0 r-rmarkdown@2.31 r-rlang@1.2.0 r-rcpp@1.1.1-1.1 r-rann@2.6.2 r-knitr@1.51 r-ggplot2@4.0.3 r-complexheatmap@2.28.0 r-circlize@0.4.18
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/DavisLaboratory/hoodscanR
Licenses: FSDG-compatible
Build system: r
Synopsis: Spatial cellular neighbourhood scanning in R
Description:

hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based cell clustering.

r-humanomni5quadv1bcrlmm 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomni5quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni5 Quad arrays using the crlmm package.

r-hapmapsnp6 1.54.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmapsnp6
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap SNP 6.0 Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-hgug4112a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4112a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent "Human Genome, Whole" annotation data (chip hgug4112a)
Description:

Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories.

r-hapmapsnp5 1.54.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmapsnp5
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap SNP 5.0 Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-huex10stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.23.1 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/huex10stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix huex10 annotation data (chip huex10stprobeset)
Description:

Affymetrix huex10 annotation data (chip huex10stprobeset) assembled using data from public repositories.

r-hipathia 3.12.0
Propagated dependencies: r-zen4r@0.10.5 r-visnetwork@2.1.4 r-tibble@3.3.1 r-summarizedexperiment@1.42.0 r-servr@0.32 r-s4vectors@0.50.1 r-reshape2@1.4.5 r-preprocesscore@1.74.0 r-multiassayexperiment@1.38.0 r-metbrewer@0.2.0 r-matrixstats@1.5.0 r-limma@3.68.3 r-igraph@2.3.1 r-ggpubr@0.6.3 r-ggplot2@4.0.3 r-dplyr@1.2.1 r-delayedarray@0.38.1 r-coin@1.4-3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hipathia
Licenses: GPL 2
Build system: r
Synopsis: HiPathia: High-throughput Pathway Analysis
Description:

Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway.

r-hivprtplus2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hivprtplus2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hivprtplus2cdf
Description:

This package provides a package containing an environment representing the HIV PRTPlus 2.CDF file.

r-hu6800probe 2.18.0
Propagated dependencies: r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu6800
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu6800\_probe\_tab.

Page: 14344454647126
Total packages: 3017