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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-hgu133atagcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133atagcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133atagcdf
Description:

This package provides a package containing an environment representing the HG-U133A_tag.CDF file.

r-hugene21stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene21stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene21 annotation data (chip hugene21stprobeset)
Description:

Affymetrix hugene21 annotation data (chip hugene21stprobeset) assembled using data from public repositories.

r-h20kcod-db 3.4.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/h20kcod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod)
Description:

Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod) assembled using data from public repositories.

r-htmg430a-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_MG-430A Array annotation data (chip htmg430a)
Description:

Affymetrix Affymetrix HT_MG-430A Array annotation data (chip htmg430a) assembled using data from public repositories.

r-htsfilter 1.50.0
Propagated dependencies: r-edger@4.8.0 r-deseq2@1.50.2 r-biocparallel@1.44.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HTSFilter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Filter replicated high-throughput transcriptome sequencing data
Description:

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

r-hgfocuscdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgfocuscdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgfocuscdf
Description:

This package provides a package containing an environment representing the HG-Focus.CDF file.

r-hgu95dprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95dprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu95d
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95D\_probe\_tab.

r-hgug4112a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4112a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent "Human Genome, Whole" annotation data (chip hgug4112a)
Description:

Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories.

r-hmp16sdata 1.30.0
Propagated dependencies: r-tibble@3.3.0 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-s4vectors@0.48.0 r-readr@2.1.6 r-magrittr@2.0.4 r-knitr@1.50 r-kableextra@1.4.0 r-experimenthub@3.0.0 r-dplyr@1.1.4 r-assertthat@0.2.1 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/waldronlab/HMP16SData
Licenses: Artistic License 2.0
Build system: r
Synopsis: 16S rRNA Sequencing Data from the Human Microbiome Project
Description:

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

r-hermes 1.14.0
Propagated dependencies: r-tidyr@1.3.1 r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-rlang@1.1.6 r-rdpack@2.6.4 r-r6@2.6.1 r-purrr@1.2.0 r-multiassayexperiment@1.36.1 r-matrixstats@1.5.0 r-magrittr@2.0.4 r-limma@3.66.0 r-iranges@2.44.0 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-ggfortify@0.4.19 r-genomicranges@1.62.0 r-forcats@1.0.1 r-envstats@3.1.0 r-edger@4.8.0 r-dplyr@1.1.4 r-deseq2@1.50.2 r-complexheatmap@2.26.0 r-circlize@0.4.16 r-checkmate@2.3.3 r-biomart@2.66.0 r-biocgenerics@0.56.0 r-biobase@2.70.0 r-assertthat@0.2.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://insightsengineering.github.io/hermes/
Licenses: ASL 2.0
Build system: r
Synopsis: Preprocessing, analyzing, and reporting of RNA-seq data
Description:

This package provides classes and functions for quality control, filtering, normalization and differential expression analysis of pre-processed `RNA-seq` data. Data can be imported from `SummarizedExperiment` as well as `matrix` objects and can be annotated from `BioMart`. Filtering for genes without too low expression or containing required annotations, as well as filtering for samples with sufficient correlation to other samples or total number of reads is supported. The standard normalization methods including cpm, rpkm and tpm can be used, and DESeq2` as well as voom differential expression analyses are available.

r-human660quadv1acrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human660quadv1aCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 660kQuad arrays using the crlmm package.

r-hicaggr 1.6.0
Propagated dependencies: r-withr@3.0.2 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-strawr@0.0.92 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rlang@1.1.6 r-rhdf5@2.54.0 r-reshape@0.8.10 r-purrr@1.2.0 r-matrix@1.7-4 r-iranges@2.44.0 r-interactionset@1.38.0 r-gridextra@2.3 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-checkmate@2.3.3 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HicAggR
Licenses: Expat
Build system: r
Synopsis: Set of 3D genomic interaction analysis tools
Description:

This package provides a set of functions useful in the analysis of 3D genomic interactions. It includes the import of standard HiC data formats into R and HiC normalisation procedures. The main objective of this package is to improve the visualization and quantification of the analysis of HiC contacts through aggregation. The package allows to import 1D genomics data, such as peaks from ATACSeq, ChIPSeq, to create potential couples between features of interest under user-defined parameters such as distance between pairs of features of interest. It allows then the extraction of contact values from the HiC data for these couples and to perform Aggregated Peak Analysis (APA) for visualization, but also to compare normalized contact values between conditions. Overall the package allows to integrate 1D genomics data with 3D genomics data, providing an easy access to HiC contact values.

r-hgu95bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu95bcdf
Description:

This package provides a package containing an environment representing the HG_U95B.CDF file.

r-hireewas 1.28.0
Propagated dependencies: r-quadprog@1.5-8 r-gplots@3.2.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HIREewas
Licenses: GPL 2+
Build system: r
Synopsis: Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies
Description:

In epigenome-wide association studies, the measured signals for each sample are a mixture of methylation profiles from different cell types. The current approaches to the association detection only claim whether a cytosine-phosphate-guanine (CpG) site is associated with the phenotype or not, but they cannot determine the cell type in which the risk-CpG site is affected by the phenotype. We propose a solid statistical method, HIgh REsolution (HIRE), which not only substantially improves the power of association detection at the aggregated level as compared to the existing methods but also enables the detection of risk-CpG sites for individual cell types. The "HIREewas" R package is to implement HIRE model in R.

r-hu6800subccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800subccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800subccdf
Description:

This package provides a package containing an environment representing the Hu6800subC.CDF file.

r-hgu133atagprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133atagprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgu133atag
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_tag\_probe\_tab.

r-hthgu133plusb-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133plusb.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb)
Description:

Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) assembled using data from public repositories.

r-huexexonprobesetlocationhg18 0.0.2
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HuExExonProbesetLocationHg18
Licenses: LGPL 2.0+
Build system: r
Synopsis: Exon-level probeset chromosome location for microarrays of type HuEx
Description:

This package was automatically created by package AnnotationDbi version 1.8.0. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg18.

r-htratfocus-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htratfocus.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus)
Description:

Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus) assembled using data from public repositories.

r-htmg430aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htmg430a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430A\_probe\_tab.

r-hcadata 1.26.0
Propagated dependencies: r-singlecellexperiment@1.32.0 r-hdf5array@1.38.0 r-experimenthub@3.0.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/federicomarini/HCAData
Licenses: Expat
Build system: r
Synopsis: Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
Description:

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

r-htmg430b-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_MG-430B Array annotation data (chip htmg430b)
Description:

Affymetrix Affymetrix HT_MG-430B Array annotation data (chip htmg430b) assembled using data from public repositories.

r-hgug4111a-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4111a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Human 1B annotation data (chip hgug4111a)
Description:

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

r-hcatonsildata 1.8.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-spatialexperiment@1.20.0 r-singlecellexperiment@1.32.0 r-s4vectors@0.48.0 r-rmarkdown@2.30 r-htmltools@0.5.8.1 r-hdf5array@1.38.0 r-experimenthub@3.0.0 r-base64enc@0.1-3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/massonix/HCATonsilData
Licenses: Expat
Build system: r
Synopsis: Provide programmatic access to the tonsil cell atlas datasets
Description:

This package provides access to the scRNA-seq, scATAC-seq, multiome, CITE-seq and spatial transcriptomics (Visium) data generated by the tonsil cell atlas in the context of the Human Cell Atlas (HCA). The data is provided via the Bioconductor project in the form of SingleCellExperiments. Additionally, information on the whole compendium of identified cell types is provided in form of a glossary.

Total results: 2909