_            _    _        _         _
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-malaria-db0 3.22.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/malaria.db0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Base Level Annotation databases for malaria
Description:

Base annotation databases for malaria, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

r-multimir 1.32.0
Propagated dependencies: r-xml@3.99-0.20 r-tibble@3.3.0 r-rcurl@1.98-1.17 r-purrr@1.2.0 r-dplyr@1.1.4 r-biocgenerics@0.56.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/KechrisLab/multiMiR
Licenses: Expat
Build system: r
Synopsis: Integration of multiple microRNA-target databases with their disease and drug associations
Description:

This package provides a collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

r-mbased 1.44.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-runit@0.4.33.1 r-genomicranges@1.62.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MBASED
Licenses: Artistic License 2.0
Build system: r
Synopsis: Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Description:

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

r-mgu74acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74acdf
Description:

This package provides a package containing an environment representing the MG_U74A.cdf file.

r-mafdb-exac-r1-0-hs37d5 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.ExAC.r1.0.hs37d5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from ExAC release 1.0 for hs37d5
Description:

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version hs37d5.

r-mitch 1.22.1
Propagated dependencies: r-rmarkdown@2.30 r-reshape2@1.4.5 r-plyr@1.8.9 r-network@1.19.0 r-mass@7.3-65 r-knitr@1.50 r-kableextra@1.4.0 r-gridextra@2.3 r-gplots@3.2.0 r-ggplot2@4.0.1 r-ggally@2.4.0 r-echarts4r@0.4.6 r-dplyr@1.1.4 r-beeswarm@0.4.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/markziemann/mitch
Licenses: FSDG-compatible
Build system: r
Synopsis: Multi-Contrast Gene Set Enrichment Analysis
Description:

mitch is an R package for multi-contrast enrichment analysis. At it’s heart, it uses a rank-MANOVA based statistical approach to detect sets of genes that exhibit enrichment in the multidimensional space as compared to the background. The rank-MANOVA concept dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). mitch is useful for pathway analysis of profiling studies with one, two or more contrasts, or in studies with multiple omics profiling, for example proteomic, transcriptomic, epigenomic analysis of the same samples. mitch is perfectly suited for pathway level differential analysis of scRNA-seq data. We have an established routine for pathway enrichment of Infinium Methylation Array data (see vignette). The main strengths of mitch are that it can import datasets easily from many upstream tools and has advanced plotting features to visualise these enrichments.

r-mogene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mogene10stv1cdf
Description:

This package provides a package containing an environment representing the MoGene-1_0-st-v1.cdf file.

r-mu22v3-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/Mu22v3.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)
Description:

FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3) assembled using data from public repositories.

r-mirbaseconverter 1.34.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/taoshengxu/miRBaseConverter
Licenses: GPL 2+
Build system: r
Synopsis: comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
Description:

This package provides a comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

r-moexexonprobesetlocation 1.15.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MoExExonProbesetLocation
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type MoEx
Description:

This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.

r-mta10probeset-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mta10probeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mta10 annotation data (chip mta10probeset)
Description:

Affymetrix mta10 annotation data (chip mta10probeset) assembled using data from public repositories.

r-multirnaflow 1.8.0
Propagated dependencies: r-upsetr@1.4.0 r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-rlang@1.1.6 r-reshape2@1.4.5 r-plot3drgl@1.0.5 r-plot3d@1.4.2 r-mfuzz@2.70.0 r-gprofiler2@0.2.4 r-ggrepel@0.9.6 r-ggplotify@0.1.3 r-ggplot2@4.0.1 r-ggalluvial@0.12.5 r-factominer@2.12 r-factoextra@1.0.7 r-deseq2@1.50.2 r-complexheatmap@2.26.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/loubator/MultiRNAflow
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions
Description:

Our R package MultiRNAflow provides an easy to use unified framework allowing to automatically make both unsupervised and supervised (DE) analysis for datasets with an arbitrary number of biological conditions and time points. In particular, our code makes a deep downstream analysis of DE information, e.g. identifying temporal patterns across biological conditions and DE genes which are specific to a biological condition for each time.

r-mosaics 2.48.0
Dependencies: perl@5.36.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-rcpp@1.1.0 r-mass@7.3-65 r-lattice@0.22-7 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://groups.google.com/group/mosaics_user_group
Licenses: GPL 2+
Build system: r
Synopsis: MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Description:

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

r-mirnatarget 1.48.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/miRNATarget
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: gene target tabale of miRNA for human/mouse used for MiRaGE package
Description:

gene target tabale of miRNA for human/mouse used for MiRaGE package.

r-mgu74cv2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74cv2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74cv2cdf
Description:

This package provides a package containing an environment representing the MG_U74Cv2.CDF file.

r-mgug4121a-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgug4121a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Mouse annotation data (chip mgug4121a)
Description:

Agilent Mouse annotation data (chip mgug4121a) assembled using data from public repositories.

r-meshdbi 1.46.0
Propagated dependencies: r-rsqlite@2.4.4 r-biobase@2.70.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MeSHDbi
Licenses: Artistic License 2.0
Build system: r
Synopsis: DBI to construct MeSH-related package from sqlite file
Description:

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

r-moe430aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type moe430a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430A\_probe\_tab.

r-mousethymusageing 1.18.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-s4vectors@0.48.0 r-experimenthub@3.0.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MouseThymusAgeing
Licenses: GPL 3
Build system: r
Synopsis: Single-cell Transcriptomics Data of the Ageing Mouse Thymus
Description:

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

r-mafdb-exac-r1-0-nontcga-hs37d5 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.ExAC.r1.0.nonTCGA.hs37d5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for hs37d5
Description:

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version hs37d5.

r-msstatsbig 1.8.1
Propagated dependencies: r-sparklyr@1.9.3 r-readr@2.1.6 r-msstatsconvert@1.20.0 r-msstats@4.18.1 r-dplyr@1.1.4 r-dbi@1.2.3 r-arrow@22.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MSstatsBig
Licenses: Artistic License 2.0
Build system: r
Synopsis: MSstats Preprocessing for Larger than Memory Data
Description:

MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.

r-mafdb-gnomadex-r2-1-hs37d5 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.gnomADex.r2.1.hs37d5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from gnomAD exomes release 2.1 for hs37d5
Description:

Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version hs37d5.

r-mogene10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)
Description:

Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster) assembled using data from public repositories.

r-metaphor 1.12.0
Propagated dependencies: r-stringr@1.6.0 r-recordlinkage@0.4-12.6 r-rcy3@2.30.0 r-pheatmap@1.0.13 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-clusterprofiler@4.18.2
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MetaPhOR
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metabolic Pathway Analysis of RNA
Description:

MetaPhOR was developed to enable users to assess metabolic dysregulation using transcriptomic-level data (RNA-sequencing and Microarray data) and produce publication-quality figures. A list of differentially expressed genes (DEGs), which includes fold change and p value, from DESeq2 or limma, can be used as input, with sample size for MetaPhOR, and will produce a data frame of scores for each KEGG pathway. These scores represent the magnitude and direction of transcriptional change within the pathway, along with estimated p-values.MetaPhOR then uses these scores to visualize metabolic profiles within and between samples through a variety of mechanisms, including: bubble plots, heatmaps, and pathway models.

Total results: 2909