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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-prostatecancergrasso 1.38.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerGrasso
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Grasso (2012) Prostate Cancer dataset.

r-pd-rhegene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rhegene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RheGene-1_0-st
Description:

Platform Design Info for Affymetrix RheGene-1_0-st.

r-plyxp 1.4.3
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/jtlandis/plyxp
Licenses: Expat
Build system: r
Synopsis: Data masks for SummarizedExperiment enabling dplyr-like manipulation
Description:

The package provides `rlang` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for `plyxp` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame.

r-pd-moe430a 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.moe430a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MOE430A
Description:

Platform Design Info for The Manufacturer's Name MOE430A.

r-pd-hg-u133a-tag 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a.tag
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A_tag
Description:

Platform Design Info for The Manufacturer's Name HG-U133A_tag.

r-pd-canine-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.canine.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Canine_2
Description:

Platform Design Info for The Manufacturer's Name Canine_2.

r-pd-2006-07-18-mm8-refseq-promoter 0.99.3
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.2006.07.18.mm8.refseq.promoter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
Description:

Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter.

r-pagerank 1.20.0
Propagated dependencies: r-motifmatchr@1.32.0 r-igraph@2.2.1 r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/hd2326/pageRank
Licenses: GPL 2
Build system: r
Synopsis: Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
Description:

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

r-pathwaypca 1.26.0
Propagated dependencies: r-survival@3.8-3 r-lars@1.3
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: <https://gabrielodom.github.io/pathwayPCA/>
Licenses: GPL 3
Build system: r
Synopsis: Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Description:

pathwayPCA is an integrative analysis tool that implements the principal component analysis (PCA) based pathway analysis approaches described in Chen et al. (2008), Chen et al. (2010), and Chen (2011). pathwayPCA allows users to: (1) Test pathway association with binary, continuous, or survival phenotypes. (2) Extract relevant genes in the pathways using the SuperPCA and AES-PCA approaches. (3) Compute principal components (PCs) based on the selected genes. These estimated latent variables represent pathway activities for individual subjects, which can then be used to perform integrative pathway analysis, such as multi-omics analysis. (4) Extract relevant genes that drive pathway significance as well as data corresponding to these relevant genes for additional in-depth analysis. (5) Perform analyses with enhanced computational efficiency with parallel computing and enhanced data safety with S4-class data objects. (6) Analyze studies with complex experimental designs, with multiple covariates, and with interaction effects, e.g., testing whether pathway association with clinical phenotype is different between male and female subjects. Citations: Chen et al. (2008) <https://doi.org/10.1093/bioinformatics/btn458>; Chen et al. (2010) <https://doi.org/10.1002/gepi.20532>; and Chen (2011) <https://doi.org/10.2202/1544-6115.1697>.

r-pd-hg-u133a-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A_2
Description:

Platform Design Info for The Manufacturer's Name HG-U133A_2.

r-packfinder 1.22.0
Propagated dependencies: r-s4vectors@0.48.0 r-kmer@1.1.2 r-iranges@2.44.0 r-genomicranges@1.62.0 r-biostrings@2.78.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/jackgisby/packFinder
Licenses: GPL 2
Build system: r
Synopsis: de novo Annotation of Pack-TYPE Transposable Elements
Description:

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

r-pd-barley1 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.barley1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Barley1
Description:

Platform Design Info for The Manufacturer's Name Barley1.

r-profilescoredist 1.38.0
Propagated dependencies: r-rcpp@1.1.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/profileScoreDist
Licenses: Expat
Build system: r
Synopsis: Profile score distributions
Description:

Regularization and score distributions for position count matrices.

r-pathnetdata 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PathNetData
Licenses: GPL 3
Build system: r
Synopsis: Experimental data for the PathNet package
Description:

This package contains the data employed in the vignette of the PathNet package. These data belong to the following publication: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J., Source Code for Biology and Medicine 2012 Sep 24;7(1):10.

r-prostatecancercamcap 1.38.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerCamcap
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Ross-Adams (2015) Prostate Cancer dataset.

r-pd-mogene-2-1-st 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.2.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-2_1-st
Description:

Platform Design Info for Affymetrix MoGene-2_1-st.

r-pd-hg18-60mer-expr 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg18.60mer.expr
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen hg18_60mer_expr
Description:

Platform Design Info for NimbleGen hg18_60mer_expr.

r-phylop35way-ucsc-mm39 3.16.0
Propagated dependencies: r-genomicscores@2.22.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phyloP35way.UCSC.mm39
Licenses: Artistic License 2.0
Build system: r
Synopsis: UCSC phyloP mm39 conservation scores AnnotationHub Resource Metadata
Description:

Store UCSC phyloP mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phyloP mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources.

r-pd-mogene-1-0-st-v1 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.1.0.st.v1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-1_0-st-v1
Description:

Platform Design Info for Affymetrix MoGene-1_0-st-v1.

r-plasmodiumanophelescdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/plasmodiumanophelescdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: plasmodiumanophelescdf
Description:

This package provides a package containing an environment representing the Plasmodium_Anopheles.cdf file.

r-pd-hg-u133a 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133A
Description:

Platform Design Info for The Manufacturer's Name HG-U133A.

r-pd-ragene-2-0-st 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ragene.2.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RaGene-2_0-st
Description:

Platform Design Info for Affymetrix RaGene-2_0-st.

r-pd-margene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.margene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MarGene-1_1-st
Description:

Platform Design Info for Affymetrix MarGene-1_1-st.

r-phenomis 1.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://doi.org/10.1038/s41597-021-01095-3
Licenses: CeCILL
Build system: r
Synopsis: Postprocessing and univariate analysis of omics data
Description:

The phenomis package provides methods to perform post-processing (i.e. quality control and normalization) as well as univariate statistical analysis of single and multi-omics data sets. These methods include quality control metrics, signal drift and batch effect correction, intensity transformation, univariate hypothesis testing, but also clustering (as well as annotation of metabolomics data). The data are handled in the standard Bioconductor formats (i.e. SummarizedExperiment and MultiAssayExperiment for single and multi-omics datasets, respectively; the alternative ExpressionSet and MultiDataSet formats are also supported for convenience). As a result, all methods can be readily chained as workflows. The pipeline can be further enriched by multivariate analysis and feature selection, by using the ropls and biosigner packages, which support the same formats. Data can be conveniently imported from and exported to text files. Although the methods were initially targeted to metabolomics data, most of the methods can be applied to other types of omics data (e.g., transcriptomics, proteomics).

Total results: 2911