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Platform Design Info for Affymetrix RUSGene-1_0-st.
planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.
Platform Design Info for Affymetrix EquGene-1_1-st.
Platform Design Info for Affymetrix Clariom_S_Rat.
Platform Design Info for Affymetrix Clariom_D_Human.
This package provides a Bioconductor data package for the Stockholm dataset.
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Poplar\_probe\_tab.
This package provides a Bayesian method for quantifying the liklihood that a given plasma mutation arises from clonal hematopoesis or the underlying tumor. It requires sequencing data of the mutation in plasma and white blood cells with the number of distinct and mutant reads in both tissues. We implement a Monte Carlo importance sampling method to assess the likelihood that a mutation arises from the tumor relative to non-tumor origin.
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was PrimeView\_probe\_tab.
Platform Design Info for Affymetrix CanGene-1_1-st.
Platform Design Info for Affymetrix ChiGene-1_0-st.
Platform Design Info for The Manufacturer's Name Mu11KsubB.
Platform Design Info for The Manufacturer's Name Rhesus.
This package provides a package containing an environment representing the Porcine.cdf file.
Platform Design Info for Affymetrix RCnGene-1_1-st.
Platform Design Info for The Manufacturer's Name Vitis_Vinifera.
Platform Design Info for Affymetrix AraGene-1_0-st.
This package provides a toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.
Platform Design Info for NimbleGen feinberg_hg18_me_hx1.
Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.
Platform Design Info for The Manufacturer's Name Canine_2.
Platform Design Info for The Manufacturer's Name ATH1-121501.
Platform Design Info for Affymetrix FelGene-1_0-st.
Platform Design Info for Affymetrix GenomeWideSNP_5.