Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.
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GET /api/packages?search=hello&page=1&limit=20
where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned
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Platform Design Info for The Manufacturer's Name HG-U133A_2.
PWMEnrich pre-compiled background objects for M.musculus (mouse) and MotifDb M. musculus motifs.
This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.
This package contains data required to run examples in prebs package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp) 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie).
Platform Design Info for Affymetrix EleGene-1_0-st.
Platform Design Info for The Manufacturer's Name Bsubtilis.
Affymetrix Affymetrix Porcine Array annotation data (chip porcine) assembled using data from public repositories.
Platform Design Info for Affymetrix RaGene-2_0-st.
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Platform Design Info for The Manufacturer's Name wheat.
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Platform Design Info for The Manufacturer's Name HG_U95C.
Platform Design Info for The Manufacturer's Name RG_U34A.
Platform Design Info for Affymetrix RUSGene-1_1-st.
Platform Design Info for Affymetrix Clariom_S_Rat_HT.
Platform Design Info for Affymetrix MTA-1_0.
This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the sample by features table of peak intensities in addition to the sample and feature metadata (as a singl<e ExpressionSet object for subsequent statistical analysis). This package also permit usefull tools for cohorts management as analyzing data progressively, visualization tools and quality control. The steps include calibration, expiration detection, peak detection and quantification, feature alignment, missing value imputation and feature annotation. Applications to exhaled air and cell culture in headspace are described in the vignettes and examples. This package was used for data analysis of Gassin Delyle study on adults undergoing invasive mechanical ventilation in the intensive care unit due to severe COVID-19 or non-COVID-19 acute respiratory distress syndrome (ARDS), and permit to identfy four potentiel biomarquers of the infection.
Platform Design Info for The Manufacturer's Name Citrus.
Store UCSC phyloP mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phyloP mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources.
Platform Design Info for The Manufacturer's Name YG_S98.
Platform Design Info for Affymetrix MedGene-1_0-st.
Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.
Platform Design Info for Affymetrix CyRGene-1_1-st.
Platform Design Info for Affymetrix RabGene-1_0-st.