_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-podcall 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PoDCall
Licenses: GPL 3
Build system: r
Synopsis: Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Description:

Reads files exported from QX Manager or QuantaSoft containing amplitude values from a run of ddPCR (96 well plate) and robustly sets thresholds to determine positive droplets for each channel of each individual well. Concentration and normalized concentration in addition to other metrics is then calculated for each well. Results are returned as a table, optionally written to file, as well as optional plots (scatterplot and histogram) for both channels per well written to file. The package includes a shiny application which provides an interactive and user-friendly interface to the full functionality of PoDCall.

r-pd-drosophila-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.drosophila.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Drosophila_2
Description:

Platform Design Info for The Manufacturer's Name Drosophila_2.

r-pd-clariom-s-human 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.s.human
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Clariom_S_Human
Description:

Platform Design Info for Affymetrix Clariom_S_Human.

r-pd-mogene-1-1-st-v1 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.1.1.st.v1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-1_1-st-v1
Description:

Platform Design Info for Affymetrix MoGene-1_1-st-v1.

r-pd-mg-u74cv2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74cv2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Cv2
Description:

Platform Design Info for The Manufacturer's Name MG_U74Cv2.

r-pd-rat230-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rat230.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Rat230_2
Description:

Platform Design Info for The Manufacturer's Name Rat230_2.

r-path2ppi 1.40.0
Propagated dependencies: r-igraph@2.2.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.bioinformatik.uni-frankfurt.de/
Licenses: GPL 2+
Build system: r
Synopsis: Prediction of pathway-related protein-protein interaction networks
Description:

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

r-pwmenrich 4.46.0
Propagated dependencies: r-seqlogo@1.76.0 r-s4vectors@0.48.0 r-gdata@3.0.1 r-evd@2.3-7.1 r-biostrings@2.78.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PWMEnrich
Licenses: LGPL 2.0+
Build system: r
Synopsis: PWM enrichment analysis
Description:

This package provides a toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.

r-partcnv 1.8.0
Propagated dependencies: r-singlecellexperiment@1.32.0 r-seurat@5.3.1 r-magrittr@2.0.4 r-genomicranges@1.62.0 r-depmixs4@1.5-1 r-data-table@1.17.8 r-biocstyle@2.38.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/partCNV
Licenses: GPL 2
Build system: r
Synopsis: Infer locally aneuploid cells using single cell RNA-seq data
Description:

This package uses a statistical framework for rapid and accurate detection of aneuploid cells with local copy number deletion or amplification. Our method uses an EM algorithm with mixtures of Poisson distributions while incorporating cytogenetics information (e.g., regional deletion or amplification) to guide the classification (partCNV). When applicable, we further improve the accuracy by integrating a Hidden Markov Model for feature selection (partCNVH).

r-pd-elegene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.elegene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix EleGene-1_1-st
Description:

Platform Design Info for Affymetrix EleGene-1_1-st.

r-parglms 1.42.0
Propagated dependencies: r-foreach@1.5.2 r-doparallel@1.0.17 r-biocgenerics@0.56.0 r-batchjobs@1.10
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/parglms
Licenses: Artistic License 2.0
Build system: r
Synopsis: support for parallelized estimation of GLMs/GEEs
Description:

This package provides support for parallelized estimation of GLMs/GEEs, catering for dispersed data.

r-pd-raex-1-0-st-v1 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.raex.1.0.st.v1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RaEx-1_0-st-v1
Description:

Platform Design Info for Affymetrix RaEx-1_0-st-v1.

r-partheenmetadata-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PartheenMetaData.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)
Description:

PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories.

r-pepdat 1.30.0
Propagated dependencies: r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pepDat
Licenses: Artistic License 2.0
Build system: r
Synopsis: Peptide microarray data package
Description:

This package provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.

r-pvca 1.50.0
Propagated dependencies: r-vsn@3.78.0 r-matrix@1.7-4 r-lme4@1.1-37 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pvca
Licenses: LGPL 2.0+
Build system: r
Synopsis: Principal Variance Component Analysis (PVCA)
Description:

This package contains the function to assess the batch sourcs by fitting all "sources" as random effects including two-way interaction terms in the Mixed Model(depends on lme4 package) to selected principal components, which were obtained from the original data correlation matrix. This package accompanies the book "Batch Effects and Noise in Microarray Experiements, chapter 12.

r-phastcons35way-ucsc-mm39 3.16.0
Propagated dependencies: r-genomicscores@2.22.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phastCons35way.UCSC.mm39
Licenses: Artistic License 2.0
Build system: r
Synopsis: UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata
Description:

Store UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phastCons mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources.

r-pd-mapping250k-sty 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mapping250k.sty
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Mapping250K_Sty
Description:

Platform Design Info for Affymetrix Mapping250K_Sty.

r-paircompviz 1.48.0
Propagated dependencies: r-rgraphviz@2.54.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/paircompviz
Licenses: FSDG-compatible
Build system: r
Synopsis: Multiple comparison test visualization
Description:

This package provides visualization of the results from the multiple (i.e. pairwise) comparison tests such as pairwise.t.test, pairwise.prop.test or pairwise.wilcox.test. The groups being compared are visualized as nodes in Hasse diagram. Such approach enables very clear and vivid depiction of which group is significantly greater than which others, especially if comparing a large number of groups.

r-pd-mirna-2-0 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.2.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-2_0
Description:

Platform Design Info for Affymetrix miRNA-2_0.

r-pepsnmrdata 1.28.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PepsNMRData
Licenses: GPL 2 FSDG-compatible
Build system: r
Synopsis: Datasets for the PepsNMR package
Description:

This package contains all the datasets used in the PepsNMR package.

r-panomir 1.14.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/pouryany/PanomiR
Licenses: Expat
Build system: r
Synopsis: Detection of miRNAs that regulate interacting groups of pathways
Description:

PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.

r-predasampledata 0.50.0
Propagated dependencies: r-preda@1.56.0 r-biobase@2.70.0 r-annotate@1.88.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PREDAsampledata
Licenses: Artistic License 2.0
Build system: r
Synopsis: expression and copy number data on clear cell renal carcinoma samples
Description:

Sample data for PREDA package. (annotations objects synchronized with GeneAnnot custom CDFs version 2.2.0).

r-plotgardener 1.16.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://phanstiellab.github.io/plotgardener
Licenses: Expat
Build system: r
Synopsis: Coordinate-Based Genomic Visualization Package for R
Description:

Coordinate-based genomic visualization package for R. It grants users the ability to programmatically produce complex, multi-paneled figures. Tailored for genomics, plotgardener allows users to visualize large complex genomic datasets and provides exquisite control over how plots are placed and arranged on a page.

r-pd-guigene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.guigene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix GuiGene-1_1-st
Description:

Platform Design Info for Affymetrix GuiGene-1_1-st.

Total results: 2911