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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-phastcons35way-ucsc-mm39 3.16.0
Propagated dependencies: r-genomicscores@2.22.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phastCons35way.UCSC.mm39
Licenses: Artistic License 2.0
Build system: r
Synopsis: UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata
Description:

Store UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phastCons mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources.

r-pepsnmrdata 1.28.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PepsNMRData
Licenses: GPL 2 FSDG-compatible
Build system: r
Synopsis: Datasets for the PepsNMR package
Description:

This package contains all the datasets used in the PepsNMR package.

r-pd-yeast-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.yeast.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Yeast_2
Description:

Platform Design Info for The Manufacturer's Name Yeast_2.

r-panr 1.56.0
Propagated dependencies: r-reder@3.6.2 r-pvclust@2.2-0 r-mass@7.3-65 r-igraph@2.2.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PANR
Licenses: Artistic License 2.0
Build system: r
Synopsis: Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Description:

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

r-panther-db 1.0.12
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PANTHER.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: set of annotation maps describing the entire PANTHER Gene Ontology
Description:

This package provides a set of annotation maps describing the entire Gene Ontology assembled using data from PANTHER.

r-process 1.86.0
Propagated dependencies: r-icens@1.82.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PROcess
Licenses: Artistic License 2.0
Build system: r
Synopsis: Ciphergen SELDI-TOF Processing
Description:

This package provides a package for processing protein mass spectrometry data.

r-proactiv 1.20.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/GoekeLab/proActiv
Licenses: Expat
Build system: r
Synopsis: Estimate Promoter Activity from RNA-Seq data
Description:

Most human genes have multiple promoters that control the expression of different isoforms. The use of these alternative promoters enables the regulation of isoform expression pre-transcriptionally. Alternative promoters have been found to be important in a wide number of cell types and diseases. proActiv is an R package that enables the analysis of promoters from RNA-seq data. proActiv uses aligned reads as input, and generates counts and normalized promoter activity estimates for each annotated promoter. In particular, proActiv accepts junction files from TopHat2 or STAR or BAM files as inputs. These estimates can then be used to identify which promoter is active, which promoter is inactive, and which promoters change their activity across conditions. proActiv also allows visualization of promoter activity across conditions.

r-pd-bovgene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.bovgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix BovGene-1_1-st
Description:

Platform Design Info for Affymetrix BovGene-1_1-st.

r-pathostat 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/mani2012/PathoStat
Licenses: GPL 2+
Build system: r
Synopsis: PathoStat Statistical Microbiome Analysis Package
Description:

The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.

r-prostatecancervarambally 1.38.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerVarambally
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Varambally dataset.

r-pd-rusgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rusgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RUSGene-1_0-st
Description:

Platform Design Info for Affymetrix RUSGene-1_0-st.

r-pd-nugo-hs1a520180 3.4.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.nugo.hs1a520180
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180
Description:

Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180.

r-phenomis 1.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://doi.org/10.1038/s41597-021-01095-3
Licenses: CeCILL
Build system: r
Synopsis: Postprocessing and univariate analysis of omics data
Description:

The phenomis package provides methods to perform post-processing (i.e. quality control and normalization) as well as univariate statistical analysis of single and multi-omics data sets. These methods include quality control metrics, signal drift and batch effect correction, intensity transformation, univariate hypothesis testing, but also clustering (as well as annotation of metabolomics data). The data are handled in the standard Bioconductor formats (i.e. SummarizedExperiment and MultiAssayExperiment for single and multi-omics datasets, respectively; the alternative ExpressionSet and MultiDataSet formats are also supported for convenience). As a result, all methods can be readily chained as workflows. The pipeline can be further enriched by multivariate analysis and feature selection, by using the ropls and biosigner packages, which support the same formats. Data can be conveniently imported from and exported to text files. Although the methods were initially targeted to metabolomics data, most of the methods can be applied to other types of omics data (e.g., transcriptomics, proteomics).

r-pd-mg-u74bv2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74bv2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Bv2
Description:

Platform Design Info for The Manufacturer's Name MG_U74Bv2.

r-pd-mg-u74b 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74b
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74B
Description:

Platform Design Info for The Manufacturer's Name MG_U74B.

r-pd-chigene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.chigene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix ChiGene-1_1-st
Description:

Platform Design Info for Affymetrix ChiGene-1_1-st.

r-pirat 1.4.4
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-reticulate@1.44.1 r-progress@1.2.3 r-mass@7.3-65 r-invgamma@1.2 r-ggplot2@4.0.1 r-basilisk@1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.prostar-proteomics.org/
Licenses: GPL 2
Build system: r
Synopsis: Precursor or Peptide Imputation under Random Truncation
Description:

Pirat enables the imputation of missing values (either MNARs or MCARs) in bottom-up LC-MS/MS proteomics data using a penalized maximum likelihood strategy. It does not require any parameter tuning, it models the instrument censorship from the data available. It accounts for sibling peptides correlations and it can leverage complementary transcriptomics measurements.

r-proteodisco 1.16.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/ErasmusMC-CCBC/ProteoDisco
Licenses: GPL 3
Build system: r
Synopsis: Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences
Description:

ProteoDisco is an R package to facilitate proteogenomics studies. It houses functions to create customized (variant) protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. The flexible workflow can be adopted to suit a myriad of research and experimental settings.

r-path2ppi 1.40.0
Propagated dependencies: r-igraph@2.2.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.bioinformatik.uni-frankfurt.de/
Licenses: GPL 2+
Build system: r
Synopsis: Prediction of pathway-related protein-protein interaction networks
Description:

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

r-pd-atdschip-tiling 0.48.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.atdschip.tiling
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Atdschip_tiling
Description:

Platform Design Info for Affymetrix Atdschip_tiling.

r-projectr 1.26.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/genesofeve/projectR/
Licenses: FSDG-compatible
Build system: r
Synopsis: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Description:

This package provides functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.

r-probamr 1.44.0
Propagated dependencies: r-txdbmaker@1.6.0 r-rtracklayer@1.70.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-biostrings@2.78.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/proBAMr
Licenses: Artistic License 2.0
Build system: r
Synopsis: Generating SAM file for PSMs in shotgun proteomics data
Description:

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

r-pd-rjpgene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rjpgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RJpGene-1_1-st
Description:

Platform Design Info for Affymetrix RJpGene-1_1-st.

r-pd-vitis-vinifera 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.vitis.vinifera
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Vitis_Vinifera
Description:

Platform Design Info for The Manufacturer's Name Vitis_Vinifera.

Total results: 2911