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Platform Design Info for The Manufacturer's Name Canine_2.
The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.
Platform Design Info for Affymetrix Mapping250K_Sty.
Platform Design Info for The Manufacturer's Name HG_U95C.
Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter.
Platform Design Info for The Manufacturer's Name Sugar_Cane.
Platform Design Info for Affymetrix DroGene-1_1-st.
Quick and straightforward visualization of read signal over genomic intervals is key for generating hypotheses from sequencing data sets (e.g. ChIP-seq, ATAC-seq, bisulfite/methyl-seq). Many tools both inside and outside of R and Bioconductor are available to explore these types of data, and they typically start with a bigWig or BAM file and end with some representation of the signal (e.g. heatmap). profileplyr leverages many Bioconductor tools to allow for both flexibility and additional functionality in workflows that end with visualization of the read signal.
Platform Design Info for The Manufacturer's Name RN_U34.
This package provides a Bioconductor data package for the Grasso (2012) Prostate Cancer dataset.
Platform Design Info for Affymetrix RabGene-1_0-st.
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was P\_aeg1a\_probe\_tab.
Platform Design Info for The Manufacturer's Name MG_U74C.
FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) assembled using data from public repositories.
Platform Design Info for The Manufacturer's Name MOE430A.
Platform Design Info for The Manufacturer's Name E_coli_2.
This package provides a function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.
Platform Design Info for Affymetrix EquGene-1_1-st.
Platform Design Info for Affymetrix RUSGene-1_1-st.
This package provides a package containing an environment representing the Pae_G1a.CDF file.
Platform Design Info for The Manufacturer's Name HG-U133A.
Platform Design Info for The Manufacturer's Name HT_HG-U133A.
Platform Design Info for The Manufacturer's Name YG_S98.
Pviz adapts the Gviz package for protein sequences and data.