_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-csindicators 1.1.3
Propagated dependencies: r-zoo@1.8-14 r-spei@1.8.1 r-s2dv@2.2.1 r-multiapply@2.1.5 r-lmomco@2.5.3 r-lmom@3.2 r-cstools@5.3.0 r-climprojdiags@0.3.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://gitlab.earth.bsc.es/es/csindicators/
Licenses: GPL 3
Build system: r
Synopsis: Climate Services' Indicators Based on Sub-Seasonal to Decadal Predictions
Description:

Set of generalised tools for the flexible computation of climate related indicators defined by the user. Each method represents a specific mathematical approach which is combined with the possibility to select an arbitrary time period to define the indicator. This enables a wide range of possibilities to tailor the most suitable indicator for each particular climate service application (agriculture, food security, energy, water management, health...). This package is intended for sub-seasonal, seasonal and decadal climate predictions, but its methods are also applicable to other time-scales, provided the dimensional structure of the input is maintained. Additionally, the outputs of the functions in this package are compatible with CSTools'. This package is described in Pérez-Zanón et al. (2023) <doi:10.1016/j.cliser.2023.100393> and it was developed in the context of H2020 MED-GOLD (776467) and S2S4E (776787) projects. See Lledó et al. (2019) <doi:10.1016/j.renene.2019.04.135> and Chou et al., 2023 <doi:10.1016/j.cliser.2023.100345> for details.

r-cheetahr 0.3.0
Propagated dependencies: r-tibble@3.3.0 r-jsonlite@2.0.0 r-htmlwidgets@1.6.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cheetahR
Licenses: GPL 3+
Build system: r
Synopsis: High Performance Tables Using 'Cheetah Grid'
Description:

An R interface to Cheetah Grid', a high-performance JavaScript table widget. cheetahR allows users to render millions of rows in just a few milliseconds, making it an excellent alternative to other R table widgets. The package wraps the Cheetah Grid JavaScript functions and makes them readily available for R users. The underlying grid implementation is based on Cheetah Grid <https://github.com/future-architect/cheetah-grid>.

r-catmaply 0.9.5
Propagated dependencies: r-tidyr@1.3.1 r-rlang@1.1.6 r-plotly@4.11.0 r-magrittr@2.0.4 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/VerkehrsbetriebeZuerich/catmaply
Licenses: Expat
Build system: r
Synopsis: Heatmap for Categorical Data using 'plotly'
Description:

This package provides methods and plotting functions for displaying categorical data on an interactive heatmap using plotly'. Provides functionality for strictly categorical heatmaps, heatmaps illustrating categorized continuous data and annotated heatmaps. Also, there are various options to interact with the x-axis to prevent overlapping axis labels, e.g. via simple sliders or range sliders. Besides the viewer pane, resulting plots can be saved as a standalone HTML file, embedded in R Markdown documents or in a Shiny app.

r-clustblock 4.1.1
Propagated dependencies: r-factominer@2.12
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=ClustBlock
Licenses: Expat
Build system: r
Synopsis: Clustering of Datasets
Description:

Hierarchical and partitioning algorithms to cluster blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. Different thresholds per cluster can be sets. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package. The CATATIS methods allows to compute some indices and tests to control the quality of CATA data. Multivariate analysis and clustering of subjects for quantitative multiblock data, CATA, RATA, Free Sorting and JAR experiments are available. Clustering of rows in multi-block context (notably with ClusMB strategy) is also included.

r-coder 0.13.10
Propagated dependencies: r-tibble@3.3.0 r-generics@0.1.4 r-decoder@1.2.2 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://docs.ropensci.org/coder/
Licenses: GPL 2
Build system: r
Synopsis: Deterministic Categorization of Items Based on External Code Data
Description:

Fast categorization of items based on external code data identified by regular expressions. A typical use case considers patient with medically coded data, such as codes from the International Classification of Diseases ('ICD') or the Anatomic Therapeutic Chemical ('ATC') classification system. Functions of the package relies on a triad of objects: (1) case data with unit id:s and possible dates of interest; (2) external code data for corresponding units in (1) and with optional dates of interest and; (3) a classification scheme ('classcodes object) with regular expressions to identify and categorize relevant codes from (2). It is easy to introduce new classification schemes ('classcodes objects) or to use default schemes included in the package. Use cases includes patient categorization based on comorbidity indices such as Charlson', Elixhauser', RxRisk V', or the comorbidity-polypharmacy score (CPS), as well as adverse events after hip and knee replacement surgery.

r-cenbar 0.1.1
Propagated dependencies: r-survival@3.8-3 r-mvtnorm@1.3-3 r-mass@7.3-65 r-glmnet@4.1-10 r-foreach@1.5.2 r-cvtools@0.3.3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CenBAR
Licenses: GPL 2
Build system: r
Synopsis: Broken Adaptive Ridge AFT Model with Censored Data
Description:

Broken adaptive ridge estimator for censored data is used to select variables and estimate their coefficients in the semi-parametric accelerated failure time model for right-censored survival data.

r-chemist 0.1.5
Propagated dependencies: r-xicor@0.4.1 r-mass@7.3-65 r-laplacesdemon@16.1.6
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CHEMIST
Licenses: GPL 3
Build system: r
Synopsis: Causal Inference with High-Dimensional Error-Prone Covariates and Misclassified Treatments
Description:

We aim to deal with the average treatment effect (ATE), where the data are subject to high-dimensionality and measurement error. This package primarily contains two functions, which are used to generate artificial data and estimate ATE with high-dimensional and error-prone data accommodated.

r-cartograflow 1.0.5
Propagated dependencies: r-sf@1.0-23 r-rlang@1.1.6 r-reshape2@1.4.5 r-plotly@4.11.0 r-igraph@2.2.1 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/fbahoken/cartogRaflow
Licenses: GPL 3
Build system: r
Synopsis: Filtering Matrix for Flow Mapping
Description:

This package provides functions to prepare and filter an origin-destination matrix for thematic flow mapping purposes. This comes after Bahoken, Francoise (2016), Mapping flow matrix a contribution, PhD in Geography - Territorial sciences. See Bahoken (2017) <doi:10.4000/netcom.2565>.

r-comparemcmcs 0.6.0
Propagated dependencies: r-xtable@1.8-4 r-rlang@1.1.6 r-reshape2@1.4.5 r-r6@2.6.1 r-nimble@1.4.0 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/nimble-dev/compareMCMCs
Licenses: Modified BSD GPL 2+
Build system: r
Synopsis: Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines
Description:

Manages comparison of MCMC performance metrics from multiple MCMC algorithms. These may come from different MCMC configurations using the nimble package or from other packages. Plug-ins for JAGS via rjags and Stan via rstan are provided. It is possible to write plug-ins for other packages. Performance metrics are held in an MCMCresult class along with samples and timing data. It is easy to apply new performance metrics. Reports are generated as html pages with figures comparing sets of runs. It is possible to configure the html pages, including providing new figure components.

r-cprobit 1.0.2
Propagated dependencies: r-nortest@1.0-4 r-gridextra@2.3 r-ggplot2@4.0.1 r-car@3.1-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cprobit
Licenses: LGPL 3
Build system: r
Synopsis: Conditional Probit Model for Analysing Continuous Outcomes
Description:

This package implements the three-step workflow for robust analysis of change in two repeated measurements of continuous outcomes, described in Ning et al. (in press), "Robust estimation of the effect of an exposure on the change in a continuous outcome", BMC Medical Research Methodology.

r-clubpro 0.6.2
Propagated dependencies: r-rcppprogress@0.4.2 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-lattice@0.22-7
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://timbeechey.github.io/clubpro/
Licenses: GPL 3+
Build system: r
Synopsis: Classification Using Binary Procrustes Rotation
Description:

This package implements a classification method described by Grice (2011, ISBN:978-0-12-385194-9) using binary procrustes rotation; a simplified version of procrustes rotation.

r-consensusclustering 1.5.0
Propagated dependencies: r-mvtnorm@1.3-3 r-igraph@2.2.1 r-dplyr@1.1.4 r-cluster@2.1.8.1 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=ConsensusClustering
Licenses: GPL 3+
Build system: r
Synopsis: Consensus Clustering
Description:

Clustering, or cluster analysis, is a widely used technique in bioinformatics to identify groups of similar biological data points. Consensus clustering is an extension to clustering algorithms that aims to construct a robust result from those clustering features that are invariant under different sources of variation. For the reference, please cite the following paper: Yousefi, Melograna, et. al., (2023) <doi:10.3389/fmicb.2023.1170391>.

r-causaloptim 1.0.0
Propagated dependencies: r-shiny@1.11.1 r-rcdd@1.6 r-igraph@2.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://sachsmc.github.io/causaloptim/
Licenses: Expat
Build system: r
Synopsis: An Interface to Specify Causal Graphs and Compute Bounds on Causal Effects
Description:

When causal quantities are not identifiable from the observed data, it still may be possible to bound these quantities using the observed data. We outline a class of problems for which the derivation of tight bounds is always a linear programming problem and can therefore, at least theoretically, be solved using a symbolic linear optimizer. We extend and generalize the approach of Balke and Pearl (1994) <doi:10.1016/B978-1-55860-332-5.50011-0> and we provide a user friendly graphical interface for setting up such problems via directed acyclic graphs (DAG), which only allow for problems within this class to be depicted. The user can then define linear constraints to further refine their assumptions to meet their specific problem, and then specify a causal query using a text interface. The program converts this user defined DAG, query, and constraints, and returns tight bounds. The bounds can be converted to R functions to evaluate them for specific datasets, and to latex code for publication. The methods and proofs of tightness and validity of the bounds are described in a paper by Sachs, Jonzon, Gabriel, and Sjölander (2022) <doi:10.1080/10618600.2022.2071905>.

r-copernicusdem 1.0.5
Propagated dependencies: r-sf@1.0-23 r-glue@1.8.0 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/mlampros/CopernicusDEM
Licenses: GPL 3
Build system: r
Synopsis: Copernicus Digital Elevation Models
Description:

Copernicus Digital Elevation Model datasets (DEM) of 90 and 30 meters resolution using the awscli command line tool. The Copernicus (DEM) is included in the Registry of Open Data on AWS (Amazon Web Services) and represents the surface of the Earth including buildings, infrastructure and vegetation.

r-comma 1.1.1
Propagated dependencies: r-turboem@2025.1 r-matrix@1.7-4 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=COMMA
Licenses: Expat
Build system: r
Synopsis: Correcting Misclassified Mediation Analysis
Description:

Use three methods to estimate parameters from a mediation analysis with a binary misclassified mediator. These methods correct for the problem of "label switching" using Youden's J criteria. A detailed description of the analysis methods is available in Webb and Wells (2024), "Effect estimation in the presence of a misclassified binary mediator" <doi:10.48550/arXiv.2407.06970>.

r-cmvnorm 1.1-1
Propagated dependencies: r-quadform@0.0-4 r-emulator@1.2-24 r-elliptic@1.5-1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/RobinHankin/cmvnorm
Licenses: GPL 2
Build system: r
Synopsis: The Complex Multivariate Gaussian Distribution
Description:

Various utilities for the complex multivariate Gaussian distribution and complex Gaussian processes.

r-cellorigins 0.1.3
Propagated dependencies: r-iterpc@0.4.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cellOrigins
Licenses: FSDG-compatible
Build system: r
Synopsis: Finds RNASeq Source Tissues Using In Situ Hybridisation Data
Description:

Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.

r-cdse 0.3.0
Propagated dependencies: r-terra@1.8-86 r-sf@1.0-23 r-lutz@0.3.2 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-httr2@1.2.1 r-geojsonsf@2.0.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://zivankaraman.github.io/CDSE/
Licenses: AGPL 3
Build system: r
Synopsis: 'Copernicus Data Space Ecosystem' API Wrapper
Description:

This package provides interface to the Copernicus Data Space Ecosystem API <https://dataspace.copernicus.eu/analyse/apis>, mainly for searching the catalog of available data from Copernicus Sentinel missions and obtaining the images for just the area of interest based on selected spectral bands. The package uses the Sentinel Hub REST API interface <https://dataspace.copernicus.eu/analyse/apis/sentinel-hub> that provides access to various satellite imagery archives. It allows you to access raw satellite data, rendered images, statistical analysis, and other features. This package is in no way officially related to or endorsed by Copernicus.

r-cbioportalr 1.1.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-glue@1.8.0 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/karissawhiting/cbioportalR
Licenses: Expat
Build system: r
Synopsis: Browse and Query Clinical and Genomic Data from cBioPortal
Description:

This package provides R users with direct access to genomic and clinical data from the cBioPortal web resource via user-friendly functions that wrap cBioPortal's existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), FACETS and select clinical data points (depending on the study). See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.

r-cdss 0.3-0
Propagated dependencies: r-readods@2.3.2 r-openxlsx@4.2.8.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CDSS
Licenses: GPL 3
Build system: r
Synopsis: Course-Dependent Skill Structures
Description:

Deriving skill structures from skill assignment data for courses (sets of learning objects).

r-confcons 0.3.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/bfakos/confcons
Licenses: GPL 3+
Build system: r
Synopsis: Confidence and Consistency of Predictive Distribution Models
Description:

Calculate confidence and consistency that measure the goodness-of-fit and transferability of predictive/potential distribution models (including species distribution models) as described by Somodi & Bede-Fazekas et al. (2024) <doi:10.1016/j.ecolmodel.2024.110667>.

r-ccm 1.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CCM
Licenses: GPL 2+
Build system: r
Synopsis: Correlation Classification Method
Description:

Classification method described in Dancik et al (2011) <doi:10.1158/0008-5472.CAN-11-2427> that classifies a sample according to the class with the maximum mean (or any other function of) correlation between the test and training samples with known classes.

r-cloudutil 0.1.12
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cloudUtil
Licenses: GPL 2
Build system: r
Synopsis: Cloud Utilization Plots
Description:

This package provides means of plots for comparing utilization data of compute systems.

r-clustord 1.3.4
Propagated dependencies: r-rcppclock@1.1 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-nnet@7.3-20 r-mass@7.3-65 r-flexclust@1.5.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://vuw-clustering.github.io/clustord/
Licenses: GPL 3
Build system: r
Synopsis: Cluster Ordinal Data via Proportional Odds or Ordered Stereotype
Description:

Biclustering, row clustering and column clustering using the proportional odds model (POM), ordered stereotype model (OSM) or binary model for ordinal categorical data. Fernández, D., Arnold, R., Pledger, S., Liu, I., & Costilla, R. (2019) <doi:10.1007/s11634-018-0324-3>.

Page: 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887
Total results: 21283