This package provides functions for fitting univariate linear regression models under Scale Mixtures of Skew-Normal (SMSN) distributions, considering left, right or interval censoring and missing responses. Estimation is performed via an EM-type algorithm. Includes selection criteria, sample generation and envelope. For details, see Gil, Y.A., Garay, A.M., and Lachos, V.H. (2025) <doi:10.1007/s10260-025-00797-x>.

Manipulate and analyze 3-D structural geometry of Protein Data Bank (PDB) files.

This package provides a candidate correspondence table between two classifications can be created when there are correspondence tables leading from the first classification to the second one via intermediate pivot classifications. The correspondence table between two statistical classifications can be updated when one of the classifications gets updated to a new version.

The currentSurvival package contains functions for the estimation of the current cumulative incidence (CCI) and the current leukaemia-free survival (CLFS). The CCI is the probability that a patient is alive and in any disease remission (e.g. complete cytogenetic remission in chronic myeloid leukaemia) after initiating his or her therapy (e.g. tyrosine kinase therapy for chronic myeloid leukaemia). The CLFS is the probability that a patient is alive and in any disease remission after achieving the first disease remission.

This package provides a generic, easy-to-use and expandable implementation of a pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4 class system. This package allows the user to read and write pharmacometric models from and to files, including a JSON-based interface to import Campsis models defined using a formal JSON schema distributed with the package. Models can be adapted further on the fly in the R environment using an intuitive API to add, modify or delete equations, ordinary differential equations (ODEs), model parameters or compartment properties (such as infusion duration or rate, bioavailability and initial values). The package also provides export facilities for use with the simulation packages â rxode2â and â mrgsolveâ . The package itself is licensed under the GPL (>= 3); the JSON schema file shipped in inst/extdata is licensed separately under the Creative Commons Attribution 4.0 International (CC BY 4.0). This package is designed and intended to be used with the package â campsisâ , a PK/PD simulation platform built on top of â rxode2â and â mrgsolveâ .

Extension of cmprsk to Stratified and Clustered data. A goodness of fit test for Fine-Gray model is also provided. Methods are detailed in the following articles: Zhou et al. (2011) <doi:10.1111/j.1541-0420.2010.01493.x>, Zhou et al. (2012) <doi:10.1093/biostatistics/kxr032>, Zhou et al. (2013) <doi: 10.1002/sim.5815>.

The Chinese ID number contains a lot of information, this package helps you get the region, date of birth, age, age based on year, gender, zodiac, constellation information from the Chinese ID number.

Allows for the easy computation of complexity: the proportion of the parameter space in line with the hypothesis by chance. The package comes with a Shiny application in which the calculations can be conducted as well.

Fitting and inference functions for generalized linear models with constrained coefficients.

This package provides a set of fast tools for converting a textual corpus into a set of normalized tables. Users may make use of the udpipe back end with no external dependencies, or a Python back ends with spaCy <https://spacy.io>. Exposed annotation tasks include tokenization, part of speech tagging, named entity recognition, and dependency parsing.

Plot confidence interval from the objects of statistical tests such as t.test(), var.test(), cor.test(), prop.test() and fisher.test() ('htest class), Tukey test [TukeyHSD()], Dunnett test [glht() in multcomp package], logistic regression [glm()], and Tukey or Games-Howell test [posthocTGH() in userfriendlyscience package]. Users are able to set the styles of lines and points. This package contains the function to calculate odds ratios and their confidence intervals from the result of logistic regression.

Duplicated music data (pre-processed and formatted) for entity resolution. The total size of the data set is 9763. There are respective gold standard records that are labeled and can be considered as a unique identifier.

Calculates the credit debt for the next period based on the available data using the cross-classification credibility model.

This package creates compact letter displays (CLDs) for pairwise comparisons from statistical post-hoc tests. Groups sharing the same letter are not significantly different from each other. Supports multiple input formats including results from stats pairwise tests, DescTools', PMCMRplus', rstatix', symmetric matrices of p-values, and data frames. Provides a consistent interface for visualizing statistical groupings across different testing frameworks.

Calculate the confidence interval and p value for change in C-statistic. The adjusted C-statistic is calculated by using formula as "Somers Dxy rank correlation"/2+0.5. The confidence interval was calculated by using the bootstrap method. The p value was calculated by using the Z testing method. Please refer to the article of Peter Ganz et al. (2016) <doi:10.1001/jama.2016.5951>.

Encode and decode c-squares, from and to simple feature (sf) or spatiotemporal arrays (stars) objects. Use c-squares codes to quickly join or query spatial data.

This package provides a first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples, and <doi:10.1016/j.patter.2023.100728> for the full paper.

Convert text into synthesized speech and get a list of supported voices for a region. Microsoft's Cognitive Services Text to Speech REST API <https://learn.microsoft.com/en-us/azure/cognitive-services/speech-service/rest-text-to-speech?tabs=streaming> supports neural text to speech voices, which support specific languages and dialects that are identified by locale.

Nonparametric rank based tests (rank-sum tests and signed-rank tests) for clustered data, especially useful for clusters having informative cluster size and intra-cluster group size.

Perceptually uniform palettes for commonly used variables in oceanography as functions taking an integer and producing character vectors of colours. See Thyng, K.M., Greene, C.A., Hetland, R.D., Zimmerle, H.M. and S.F. DiMarco (2016) <doi:10.5670/oceanog.2016.66> for the guidelines adhered to when creating the palettes.

Additive copula regression for regression problems with binary outcome via gradient boosting [Brant, Hobæk Haff (2022); <arXiv:2208.04669>]. The fitting process includes a specialised model selection algorithm for each component, where each component is found (by greedy optimisation) among all the D-vines with only Gaussian pair-copulas of a fixed dimension, as specified by the user. When the variables and structure have been selected, the algorithm then re-fits the component where the pair-copula distributions can be different from Gaussian, if specified.

This package provides a set of functions to manage CRAN'-like repositories efficiently.

Expectation-Maximization (EM) algorithm for point estimation and variance estimation to the nonparametric maximum likelihood estimator (NPMLE) for logistic-Cox cure-rate model with left truncation and right- censoring. See Hou, Chambers and Xu (2017) <doi:10.1007/s10985-017-9415-2>.

This package provides a fast way to loop a character vector or file names as a menu in the console for the user to choose an option.