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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-dnnsim 0.1.1
Propagated dependencies: r-reticulate@1.44.1 r-rdpack@2.6.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DNNSIM
Licenses: GPL 3+
Build system: r
Synopsis: Single-Index Neural Network for Skewed Heavy-Tailed Data
Description:

This package provides a deep neural network model with a monotonic increasing single index function tailored for periodontal disease studies. The residuals are assumed to follow a skewed T distribution, a skewed normal distribution, or a normal distribution. More details can be found at Liu, Huang, and Bai (2024) <doi:10.1016/j.csda.2024.108012>.

r-dtangle 2.0.9
Propagated dependencies: r-deoptimr@1.1-4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dtangle
Licenses: GPL 3
Build system: r
Synopsis: Cell Type Deconvolution from Gene Expressions
Description:

Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) <doi:10.1093/bioinformatics/bty926>.

r-degday 0.4.0
Propagated dependencies: r-zoo@1.8-14 r-magrittr@2.0.4 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/ucanr-igis/degday/
Licenses: GPL 3+
Build system: r
Synopsis: Compute Degree Days
Description:

Compute degree days from daily min and max temperatures for modeling plant and insect development.

r-dnn 0.0.7
Propagated dependencies: r-survival@3.8-3 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-lpl@0.13 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dnn
Licenses: GPL 2+
Build system: r
Synopsis: Deep Neural Network Tools for Probability and Statistic Models
Description:

This package contains a robust set of tools designed for constructing deep neural networks, which are highly adaptable with user-defined loss function and probability models. It includes several practical applications, such as the (deepAFT) model, which utilizes a deep neural network approach to enhance the accelerated failure time (AFT) model for survival data. Another example is the (deepGLM) model that applies deep neural network to the generalized linear model (glm), accommodating data types with continuous, categorical and Poisson distributions.

r-detrendr 0.6.15
Propagated dependencies: r-withr@3.0.2 r-stringr@1.6.0 r-rlang@1.1.6 r-rcppparallel@5.1.11-1 r-rcpp@1.1.0 r-purrr@1.2.0 r-plyr@1.8.9 r-magrittr@2.0.4 r-iterators@1.0.14 r-ijtiff@3.2.0 r-foreach@1.5.2 r-filesstrings@3.4.0 r-dplyr@1.1.4 r-doparallel@1.0.17 r-checkmate@2.3.3 r-autothresholdr@1.4.3 r-arrayhelpers@1.1-0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://rorynolan.github.io/detrendr/
Licenses: Modified BSD
Build system: r
Synopsis: Detrend Images
Description:

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS and FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

r-dosesens 1.0.0
Propagated dependencies: r-nloptr@2.2.1 r-lpsolve@5.6.23 r-gtools@3.9.5 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=doseSens
Licenses: Expat
Build system: r
Synopsis: Conduct Sensitivity Analysis with Continuous Exposures and Binary or Continuous Outcomes
Description:

This package performs sensitivity analysis for the sharp null, attributable effects, and weak nulls in matched studies with continuous exposures and binary or continuous outcomes as described in Zhang, Small, Heng (2024) <doi:10.48550/arXiv.2401.06909> and Zhang, Heng (2024) <doi:10.48550/arXiv.2409.12848>. Two of the functions require installation of the Gurobi optimizer. Please see <https://docs.gurobi.com/current/#refman/ins_the_r_package.html> for guidance.

r-dfer 1.0.1
Propagated dependencies: r-withr@3.0.2 r-usethis@3.2.1 r-tidyselect@1.2.1 r-rlang@1.1.6 r-renv@1.1.5 r-magrittr@2.0.4 r-lifecycle@1.0.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-emoji@16.0.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://dfe-analytical-services.github.io/dfeR/
Licenses: GPL 3+
Build system: r
Synopsis: Common Department for Education Analysis Tasks
Description:

Preferred methods for common analytical tasks that are undertaken across the Department, including number formatting, project templates and curated reference data.

r-distcomp 1.3-4
Propagated dependencies: r-survival@3.8-3 r-stringr@1.6.0 r-shiny@1.11.1 r-rlang@1.1.6 r-r6@2.6.1 r-magrittr@2.0.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-homomorpher@0.3 r-gmp@0.7-5 r-dplyr@1.1.4 r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: http://dx.doi.org/10.18637/jss.v077.i13
Licenses: LGPL 2.0+
Build system: r
Synopsis: Computations over Distributed Data without Aggregation
Description:

Implementing algorithms and fitting models when sites (possibly remote) share computation summaries rather than actual data over HTTP with a master R process (using opencpu', for example). A stratified Cox model and a singular value decomposition are provided. The former makes direct use of code from the R survival package. (That is, the underlying Cox model code is derived from that in the R survival package.) Sites may provide data via several means: CSV files, Redcap API, etc. An extensible design allows for new methods to be added in the future and includes facilities for local prototyping and testing. Web applications are provided (via shiny') for the implemented methods to help in designing and deploying the computations.

r-d3po 1.0.3
Propagated dependencies: r-rlang@1.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-htmlwidgets@1.6.4 r-dplyr@1.1.4 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://pacha.dev/d3po/
Licenses: ASL 2.0
Build system: r
Synopsis: Fast and Beautiful Interactive Visualization for 'Markdown' and 'Shiny'
Description:

Apache licensed alternative to Highcharter which provides functions for both fast and beautiful interactive visualization for Markdown and Shiny'.

r-dstabledist 0.1.0
Propagated dependencies: r-stabledist@0.7-2 r-rdpack@2.6.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dstabledist
Licenses: GPL 3
Build system: r
Synopsis: The Discrete Stable Distribution Functions
Description:

Probability generating function, formulae for the probabilities (discrete density) and random generation for discrete stable random variables.

r-dadjoke 1.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dadjoke
Licenses: GPL 2
Build system: r
Synopsis: Displays a Dad Joke
Description:

Displays a terrible joke, the kind only dads crack.

r-dispmod 1.2
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dispmod
Licenses: GPL 2+
Build system: r
Synopsis: Modelling Dispersion in GLM
Description:

This package provides functions for estimating Gaussian dispersion regression models (Aitkin, 1987 <doi:10.2307/2347792>), overdispersed binomial logit models (Williams, 1987 <doi:10.2307/2347977>), and overdispersed Poisson log-linear models (Breslow, 1984 <doi:10.2307/2347661>), using a quasi-likelihood approach.

r-datana 1.1.5
Propagated dependencies: r-scales@1.4.0 r-hmisc@5.2-4 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=datana
Licenses: GPL 3+
Build system: r
Synopsis: Datasets and Functions to Accompany Analisis De Datos Con R
Description:

Datasets and functions to accompany the book Analisis de datos con el programa estadistico R: una introduccion aplicada by Salas-Eljatib (2021, ISBN: 9789566086109). The package helps carry out data management, exploratory analyses, and model fitting.

r-designer 0.3.0
Propagated dependencies: r-shinyscreenshot@0.2.1 r-shiny@1.11.1 r-shinipsum@0.1.1 r-rappdirs@0.3.3 r-jsonlite@2.0.0 r-htmltools@0.5.8.1 r-golem@0.5.1 r-fontawesome@0.5.3 r-config@0.3.2 r-cicerone@1.0.4 r-bslib@0.9.0 r-bs4dash@2.3.5
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://ashbaldry.github.io/designer/
Licenses: Expat
Build system: r
Synopsis: 'Shiny' UI Prototype Builder
Description:

This package provides a shiny application that enables the user to create a prototype UI, being able to drag and drop UI components before being able to save or download the equivalent R code.

r-detlifeinsurance 0.1.3
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/JoaquinAuza/DetLifeInsurance
Licenses: GPL 3
Build system: r
Synopsis: Life Insurance Premium and Reserves Valuation
Description:

This package provides methods for valuation of life insurance premiums and reserves (including variable-benefit and fractional coverage) based on "Actuarial Mathematics" by Bowers, H.U. Gerber, J.C. Hickman, D.A. Jones and C.J. Nesbitt (1997, ISBN: 978-0938959465), "Actuarial Mathematics for Life Contingent Risks" by Dickson, David C. M., Hardy, Mary R. and Waters, Howard R (2009) <doi:10.1017/CBO9780511800146> and "Life Contingencies" by Jordan, C. W (1952) <doi:10.1017/S002026810005410X>. It also contains functions for equivalent interest and discount rate calculation, present and future values of annuities, and loan amortization schedule.

r-datacleanr 1.0.5
Propagated dependencies: r-summarytools@1.1.4 r-shinywidgets@0.9.0 r-shinyfiles@0.9.3 r-shiny@1.11.1 r-rstudioapi@0.17.1 r-rlang@1.1.6 r-rcolorbrewer@1.1-3 r-purrr@1.2.0 r-plotly@4.11.0 r-magrittr@2.0.4 r-lubridate@1.9.4 r-htmlwidgets@1.6.4 r-glue@1.8.0 r-fs@1.6.6 r-formatr@1.14 r-dt@0.34.0 r-dplyr@1.1.4 r-clipr@0.8.0 r-bslib@0.9.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/the-Hull/datacleanr
Licenses: GPL 3
Build system: r
Synopsis: Interactive and Reproducible Data Cleaning
Description:

Flexible and efficient cleaning of data with interactivity. datacleanr facilitates best practices in data analyses and reproducibility with built-in features and by translating interactive/manual operations to code. The package is designed for interoperability, and so seamlessly fits into reproducible analyses pipelines in R'.

r-dotgen 0.1.1
Propagated dependencies: r-mvtnorm@1.3-3
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/xiaoran831213/dotgen
Licenses: GPL 2+
Build system: r
Synopsis: Gene-Set Analysis via Decorrelation by Orthogonal Transformation
Description:

Decorrelates a set of summary statistics (i.e., Z-scores or P-values per SNP) via Decorrelation by Orthogonal Transformation (DOT) approach and performs gene-set analyses by combining transformed statistic values; operations are performed with algorithms that rely only on the association summary results and the linkage disequilibrium (LD). For more details on DOT and its power, see Olga (2020) <doi:10.1371/journal.pcbi.1007819>.

r-discretefdr 2.1.1
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-lifecycle@1.0.4 r-discretetests@0.3.0 r-discretedatasets@0.2.0 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/DISOhda/DiscreteFDR
Licenses: GPL 3
Build system: r
Synopsis: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests
Description:

Implementations of the multiple testing procedures for discrete tests described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input the results of a test procedure from package DiscreteTests', or a set of observed p-values and their discrete support under their nulls. A shortcut function to obtain such p-values and supports is also provided, along with a wrapper allowing to apply discrete procedures directly to data.

r-diffeqr 2.1.0
Dependencies: julia@1.8.5
Propagated dependencies: r-juliacall@0.17.6
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/SciML/diffeqr
Licenses: Expat
Build system: r
Synopsis: Solving Differential Equations (ODEs, SDEs, DDEs, DAEs)
Description:

An interface to DifferentialEquations.jl <https://diffeq.sciml.ai/dev/> from the R programming language. It has unique high performance methods for solving ordinary differential equations (ODE), stochastic differential equations (SDE), delay differential equations (DDE), differential-algebraic equations (DAE), and more. Much of the functionality, including features like adaptive time stepping in SDEs, are unique and allow for multiple orders of magnitude speedup over more common methods. Supports GPUs, with support for CUDA (NVIDIA), AMD GPUs, Intel oneAPI GPUs, and Apple's Metal (M-series chip GPUs). diffeqr attaches an R interface onto the package, allowing seamless use of this tooling by R users. For more information, see Rackauckas and Nie (2017) <doi:10.5334/jors.151>.

r-drip 2.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://miamioh.edu/fsb/directory/?up=/directory/kangy10
Licenses: GPL 2+
Build system: r
Synopsis: Discontinuous Regression and Image Processing
Description:

This package provides a collection of functions that perform jump regression and image analysis such as denoising, deblurring and jump detection. The implemented methods are based on the following research: Qiu, P. (1998) <doi:10.1214/aos/1024691468>, Qiu, P. and Yandell, B. (1997) <doi: 10.1080/10618600.1997.10474746>, Qiu, P. (2009) <doi: 10.1007/s10463-007-0166-9>, Kang, Y. and Qiu, P. (2014) <doi: 10.1080/00401706.2013.844732>, Qiu, P. and Kang, Y. (2015) <doi: 10.5705/ss.2014.054>, Kang, Y., Mukherjee, P.S. and Qiu, P. (2018) <doi: 10.1080/00401706.2017.1415975>, Kang, Y. (2020) <doi: 10.1080/10618600.2019.1665536>.

r-dclear 1.0.13
Propagated dependencies: r-tidyr@1.3.1 r-tensorflow@2.20.0 r-stringr@1.6.0 r-rlang@1.1.6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rbayesianoptimization@1.2.2 r-purrr@1.2.0 r-phangorn@2.12.1 r-matrixstats@1.5.0 r-matrix@1.7-4 r-igraph@2.2.1 r-dplyr@1.1.4 r-biocparallel@1.44.0 r-biocgenerics@0.56.0 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/ikwak2/DCLEAR
Licenses: GPL 3
Build system: r
Synopsis: Distance Based Cell Lineage Reconstruction
Description:

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

r-densparcorr 1.1
Propagated dependencies: r-gplots@3.2.0 r-clime@0.5.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DensParcorr
Licenses: GPL 2
Build system: r
Synopsis: Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
Description:

Provide a Dens-based method for estimating functional connection in large scale brain networks using partial correlation.

r-dataqualitydashboard 2.8.6
Propagated dependencies: r-tidyselect@1.2.1 r-stringr@1.6.0 r-sqlrender@1.19.4 r-rlang@1.1.6 r-rjava@1.0-11 r-readr@2.1.6 r-plyr@1.8.9 r-parallellogger@3.5.1 r-magrittr@2.0.4 r-jsonlite@2.0.0 r-dplyr@1.1.4 r-databaseconnector@7.1.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/OHDSI/DataQualityDashboard
Licenses: ASL 2.0
Build system: r
Synopsis: Execute and View Data Quality Checks on OMOP CDM Database
Description:

Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R `shiny` application to view the results.

r-drugsim2dr 0.1.2
Propagated dependencies: r-tidyr@1.3.1 r-reshape2@1.4.5 r-pheatmap@1.0.13 r-igraph@2.2.1 r-fastmatch@1.1-6
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DrugSim2DR
Licenses: GPL 2+
Build system: r
Synopsis: Predict Drug Functional Similarity to Drug Repurposing
Description:

This package provides a systematic biology tool was developed to repurpose drugs via a drug-drug functional similarity network. DrugSim2DR first predict drug-drug functional similarity in the context of specific disease, and then using the similarity constructed a weighted drug similarity network. Finally, it used a network propagation algorithm on the network to identify drugs with significant target abnormalities as candidate drugs.

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