This package provides functions to pipe data from R to DataGraph', a graphing and analysis application for mac OS. Create a live connection using either .dtable or .dtbin files that can be read by DataGraph'. Can save a data frame, collection of data frames and sequences of data frames and individual vectors. For more information see <https://community.visualdatatools.com/datagraph/knowledge-base/r-package/>.

Bayesian Beta Regression, adapted for bounded discrete responses, commonly seen in survey responses. Estimation is done via Markov Chain Monte Carlo sampling, using a Gibbs wrapper around univariate slice sampler (Neal (2003) <DOI:10.1214/aos/1056562461>), as implemented in the R package MfUSampler (Mahani and Sharabiani (2017) <DOI: 10.18637/jss.v078.c01>).

Discrete event simulation (DES) involves modeling of systems having discrete, i.e. abrupt, state changes. For instance, when a job arrives to a queue, the queue length abruptly increases by 1. This package is an R implementation of the event-oriented approach to DES; see the tutorial in Matloff (2008) <http://heather.cs.ucdavis.edu/~matloff/156/PLN/DESimIntro.pdf>.

These are data sets for the hit TV show, RuPaul's Drag Race. Data right now include episode-level data, contestant-level data, and episode-contestant-level data. This is a work in progress, and a love letter of a kind to RuPaul's Drag Race and the performers that have appeared on the show. This may not be the most productive use of my time, but I have tenure and what are you going to do about it? I think there is at least some value in this package if it allows the show's fandom to learn more about the R programming language around its contents.

Estimates Two-way Fixed Effects difference-in-differences/event-study models using the imputation-based approach proposed by Borusyak, Jaravel, and Spiess (2021).

Build graph/network structures using functions for stepwise addition and deletion of nodes and edges. Work with data available in tables for bulk addition of nodes, edges, and associated metadata. Use graph selections and traversals to apply changes to specific nodes or edges. A wide selection of graph algorithms allow for the analysis of graphs. Visualize the graphs and take advantage of any aesthetic properties assigned to nodes and edges.

Supports global health data analysis, including a publication-ready ggplot2 theme, a flextable defaults helper, a thin pie chart wrapper, built-in regional country-code datasets with a WHO region lookup helper, a geometric mean function for indicator aggregation, and convenience clients for the World Health Organization Global Health Observatory (GHO) OData API <https://ghoapi.azureedge.net/api/> and the United Nations Sustainable Development Goals (SDG) API <https://unstats.un.org/SDGAPI/swagger/>.

This package provides a Bayesian hierarchical model for clustering dissimilarity data using the Dirichlet process. The latent configuration of objects and the number of clusters are automatically inferred during the fitting process. The package supports multiple models which are available to detect clusters of various shapes and sizes using different covariance structures. Additional functions are included to ensure adequate model fits through prior and posterior predictive checks.

Generates an RMarkdown data report with two components: a summary of an input dataset and a diff of the dataset relative to an old version.

Fits, bootstraps, and evaluates two-component normal and lognormal mixture models. Includes diagnostic plots and statistical evaluation of mixture model fits using differential evolution optimization.

This function provides an interface between Matlab and R in facilitating fast processing for reading and saving DICOM images.

This package provides read and write access to data and metadata from the DataONE network <https://www.dataone.org> of data repositories. Each DataONE repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository. Users can also insert and update data objects on repositories that support these methods.

Dynamic stochastic block model that combines a stochastic block model (SBM) for its static part with independent Markov chains for the evolution of the nodes groups through time, developed in Matias and Miele (2016) <doi:10.1111/rssb.12200>.

This package provides tools for working with multiple related tables, stored as data frames or in a relational database. Multiple tables (data and metadata) are stored in a compound object, which can then be manipulated with a pipe-friendly syntax.

This R function implements the nonstationary Kriging model proposed by Tuo, Wu and Yu (2014) <DOI:10.1080/00401706.2013.842935> for analyzing multi-fidelity computer outputs. This function computes the maximum likelihood estimates for the model parameters as well as the predictive means and variances of the exact solution.

It is a novel tool used to identify the candidate drugs against a particular disease based on the drug target set enrichment analysis. It assumes the most effective drugs are those with a closer affinity in the protein-protein interaction network to the specified disease. (See Gómez-Carballa et al. (2022) <doi: 10.1016/j.envres.2022.112890> and Feng et al. (2022) <doi: 10.7150/ijms.67815> for disease expression profiles; see Wishart et al. (2018) <doi: 10.1093/nar/gkx1037> and Gaulton et al. (2017) <doi: 10.1093/nar/gkw1074> for drug target information; see Kanehisa et al. (2021) <doi: 10.1093/nar/gkaa970> for the details of KEGG database.).

This package provides a framework for the replicable removal of personally identifiable data (PID) in data sets. The package implements a suite of methods to suit different data types based on the suggestions of Garfinkel (2015) <doi:10.6028/NIST.IR.8053> and the ICO "Guidelines on Anonymization" (2012) <https://ico.org.uk/media/1061/anonymisation-code.pdf>.

Data and miscellanea to support the book "Introduction to Data analysis with R for Forensic Scientists." This book was written by James Curran and published by CRC Press in 2010 (ISBN: 978-1-4200-8826-7).

Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), <http://www.pnas.org/content/109/39/15865.full>, and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.

Extracts colonisation and branching times of island species to be used for analysis in the R package DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.

This package provides functions and an example dataset for the psychometric theory of knowledge spaces. This package implements data analysis methods and procedures for simulating data and quasi orders and transforming different formulations in knowledge space theory. See package?DAKS for an overview.

Compare detrital zircon suites by uploading univariate, U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a shiny'-based user-interface. Outputs publication quality figures using ggplot2', and tables of statistics currently in use in the detrital zircon geochronology community.

This package provides a set of algorithms based on Quinn et al. (1991) <doi:10.1002/hyp.3360050106> for processing river network and digital elevation data to build implementations of Dynamic TOPMODEL, a semi-distributed hydrological model proposed in Beven and Freer (2001) <doi:10.1002/hyp.252>. The dynatop package implements simulation code for Dynamic TOPMODEL based on the output of dynatopGIS'.

This package provides functions to download and treat data regarding the Brazilian Amazon region from a variety of official sources.