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This package provides tools to study lineages, grandparenthood, loss of close relatives, kinship networks and other topics in multi-generation populations.
Estimating the number of factors in Exploratory Factor Analysis (EFA) with out-of-sample prediction errors using a cross-validation scheme. Haslbeck & van Bork (Preprint) <https://psyarxiv.com/qktsd>.
Upload, download, and edit internet maps with the Felt API (<https://developers.felt.com/rest-api/getting-started>). Allows users to create new maps, edit existing maps, and extract data. Provides tools for working with layers, which represent geographic data, and elements, which are interactive annotations. Spatial data accessed from the API is transformed to work with sf'.
Climate is a critical component limiting growing range of plant species, which also determines cultivar adaptation to a region. The evaluation of climate influence on fruit production is critical for decision-making in the design stage of orchards and vineyards and in the evaluation of the potential consequences of future climate. Bio- climatic indices and plant phenology are commonly used to describe the suitability of climate for growing quality fruit and to provide temporal and spatial information about regarding ongoing and future changes. fruclimadapt streamlines the assessment of climate adaptation and the identification of potential risks for grapevines and fruit trees. Procedures in the package allow to i) downscale daily meteorological variables to hourly values (Forster et al (2016) <doi:10.5194/gmd-9-2315-2016>), ii) estimate chilling and forcing heat accumulation (Miranda et al (2019) <https://ec.europa.eu/eip/agriculture/sites/default/files/fg30_mp5_phenology_critical_temperatures.pdf>), iii) estimate plant phenology (Schwartz (2012) <doi:10.1007/978-94-007-6925-0>), iv) calculate bioclimatic indices to evaluate fruit tree and grapevine adaptation (e.g. Badr et al (2017) <doi:10.3354/cr01532>), v) estimate the incidence of weather-related disorders in fruits (e.g. Snyder and de Melo-Abreu (2005, ISBN:92-5-105328-6) and vi) estimate plant water requirements (Allen et al (1998, ISBN:92-5-104219-5)).
Include a countdown <https://github.com/PButcher/flipdown> in all R contexts with the convenience of htmlwidgets'.
This package provides an interface to the Flickr API <https://www.flickr.com/services/api/> and allows R users to download data on Flickr.
Interactive data visualization for data practitioners. flourishcharts allows users to visualize their data using Flourish graphs that are grounded in data storytelling principles. Users can create racing bar & line charts, as well as other interactive elements commonly found in D3 graphics, easily in R and Python'. The package relies on an enterprise API provided by Flourish', a data visualization platform <https://developers.flourish.studio/api/introduction/>.
An implementation of regression models with partial differential regularizations, making use of the Finite Element Method. The models efficiently handle data distributed over irregularly shaped domains and can comply with various conditions at the boundaries of the domain. A priori information about the spatial structure of the phenomenon under study can be incorporated in the model via the differential regularization. See Sangalli, L. M. (2021) <doi:10.1111/insr.12444> "Spatial Regression With Partial Differential Equation Regularisation" for an overview. The release 1.1-9 requires R (>= 4.2.0) to be installed on windows machines.
Build display tables easily by extending the functionality of the flextable package. Features include spanning header, grouping rows, parsing markdown and so on.
This package provides a simple way to unload none-base packages and remove all global variables.
Fuzzy string matching implementation of the fuzzywuzzy <https://github.com/seatgeek/fuzzywuzzy> python package. It uses the Levenshtein Distance <https://en.wikipedia.org/wiki/Levenshtein_distance> to calculate the differences between sequences.
New and faster implementations for quantile quantile plots. The package also includes a function to prune data for quantile quantile plots. This can drastically reduce the running time for large samples, for 100 million samples, you can expect a factor 80X speedup.
This package provides a compact and explicit machine learning framework for supervised learning, resampling-based evaluation, hyperparameter tuning, learner comparison, interpretation, and plug-in g-computation. The package uses standard formulas for model specification and provides stable S3 interfaces for fitting, evaluation, tuning, interpretation, and causal estimation across a learner registry with multiple backend engines. Implemented interpretation methods build on established approaches such as permutation-based variable importance, partial dependence, individual conditional expectation, accumulated local effects, SHAP, and LIME; see Friedman (2001) <doi:10.1214/aos/1013203451>, Goldstein et al. (2015) <doi:10.1080/10618600.2014.907095>, Apley and Zhu (2020) <doi:10.1111/rssb.12377>, Lundberg and Lee (2017) <doi:10.48550/arXiv.1705.07874>, and Ribeiro et al. (2016) <doi:10.48550/arXiv.1602.04938>. The framework is intentionally opinionated: preprocessing is expected to occur outside the modeling step, and the API emphasizes explicit inputs, consistent object contracts, and compact interfaces rather than feature-by-feature competition with larger machine learning ecosystems.
Providing classes, methods, and functions to deal with financial networks. Users can easily store information about both physical and legal persons by using pre-made classes that are studied for integration with scraping packages such as rvest and RSelenium'. Moreover, the package assists in creating various types of financial networks depending on the type of relation between its units depending on the relation under scrutiny (ownership, board interlocks, etc.), the desired tie type (valued or binary), and renders them in the most common formats (adjacency matrix, incidence matrix, edge list, igraph', network'). There are also ad-hoc functions for the Fiedler value, global network efficiency, and cascade-failure analysis.
Normalizes the data from a file containing the raw values of the SNP probes of microarray data by using the FISH probes and their corresponding copy number.
This package provides a selection of 3 different inference rules (including additionally the clamped types of the referred inference rules) and 4 threshold functions in order to obtain the inference of the FCM (Fuzzy Cognitive Map). Moreover, the fcm package returns a data frame of the concepts values of each state after the inference procedure. Fuzzy cognitive maps were introduced by Kosko (1986) <doi:10.1002/int.4550010405> providing ideal causal cognition tools for modeling and simulating dynamic systems.
The FAS package implements the bootstrap method for the tuning parameter selection and tuning-free inference on sparse regression coefficient vectors. Currently, the test could be applied to linear and factor-augmented sparse regressions, see Lederer & Vogt (2021, JMLR) <https://www.jmlr.org/papers/volume22/20-539/20-539.pdf> and Beyhum & Striaukas (2023) <arXiv:2307.13364>.
Visualization of pre-downloaded Fitbit personal health data using ggplot2 Visualizations, Leaflet and 3-dimensional Rayshader Maps. The 3-dimensional Rayshader Map requires the installation of the CopernicusDEM R package which includes the 30- and 90-meter elevation data.
For cleaning and analysis of graphs, such as animal closing force measurements. forceR was initially written and optimized to deal with insect bite force measurements, but can be used for any time series. Includes a full workflow to load, plot and crop data, correct amplifier and baseline drifts, identify individual peak shapes (bites), rescale (normalize) peak curves, and find best polynomial fits to describe and analyze force curve shapes.
This package provides a collection of functions to manage, to investigate and to analyze data sets of financial assets from different points of view.
The algorithm assigns rareness/ outlierness score to every sample in voluminous datasets. The algorithm makes multiple estimations of the proximity between a pair of samples, in low-dimensional spaces. To compute proximity, FiRE uses Sketching, a variant of locality sensitive hashing. For more details: Jindal, A., Gupta, P., Jayadeva and Sengupta, D., 2018. Discovery of rare cells from voluminous single cell expression data. Nature Communications, 9(1), p.4719. <doi:10.1038/s41467-018-07234-6>.
Validate function arguments succinctly with informative error messages and optional automatic type casting and size recycling. Enable schema-based assertions by attaching reusable rules to data.frame and list objects for use throughout workflows.
The FLEX method, developed by Yoon and Choi (2013) <doi:10.1007/978-3-642-33042-1_21>, performs least squares estimation for fuzzy predictors and outcomes, generating crisp regression coefficients by minimizing the distance between observed and predicted outcomes. It also provides functions for fuzzifying data and inference tasks, including significance testing, fit indices, and confidence interval estimation.
Converts R data frames and sf spatial objects into JSON and GeoJSON strings. The core encoders are implemented in Rust using the extendr framework and are designed to efficiently serialize large tabular and spatial datasets. Returns serialized JSON text, allowing applications such as shiny or web APIs to transfer data to client-side JavaScript libraries without additional encoding overhead.