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Ternary plots made simple. This package allows to create ternary plots using graphics'. It provides functions to display the data in the ternary space, to add or tune graphical elements and to display statistical summaries. It also includes common ternary diagrams which are useful for the archaeologist (e.g. soil texture charts, ceramic phase diagram).
The digits of the old version (before 2000 year) of Chinese ID Card Number is 15, this package aims to update to the current version of 18 digits. Besides, this package can help check whether the given ID is right or not.
Implementations of the weighted Kozachenko-Leonenko entropy estimator and independence tests based on this estimator, (Kozachenko and Leonenko (1987) <http://mi.mathnet.ru/eng/ppi797>). Also includes a goodness-of-fit test for a linear model which is an independence test between covariates and errors.
Paquete creado con el fin de facilitar el cálculo y distribución del à ndice Socio Material Territorial (ISMT), elaborado por el Observatorio de Ciudades UC. La metodologà a completa está disponible en "ISMT" (<https://ideocuc-ocuc.hub.arcgis.com/datasets/6ed956450cfc4293b7d90df3ce3474e4/about>) [Observatorio de Ciudades UC (2019)]. || Package created to facilitate the calculation and distribution of the Socio-Material Territorial Index by Observatorio de Ciudades UC. The full methodology is available at "ISMT" (<https://ideocuc-ocuc.hub.arcgis.com/datasets/6ed956450cfc4293b7d90df3ce3474e4/about>) [Observatorio de Ciudades UC (2019)].
This package provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the tidyverse code used to obtain the result in an effort to bridge the gap between GUI and coding.
This package implements continuous-time hidden Markov models (HMMs) to infer identity-by-descent (IBD) segments shared by two individuals from their single-nucleotide polymorphism (SNP) genotypes. Provides posterior probabilities at each marker (forward-backward algorithm), prediction of IBD segments (Viterbi algorithm), and functions for visualising results. Supports both autosomal data and X-chromosomal data.
Reproducible, programmatic retrieval of datasets from the Inter-university Consortium for Political and Social Research archive.
Regression models for interval censored data. Currently supports Cox-PH, proportional odds, and accelerated failure time models. Allows for semi and fully parametric models (parametric only for accelerated failure time models) and Bayesian parametric models. Includes functions for easy visual diagnostics of model fits and imputation of censored data.
Calculate B-spline basis functions with a given set of knots and order, or a B-spline function with a given set of knots and order and set of de Boor points (coefficients), or the integral of a B-spline function.
Tools, tutorials, and demos of Item Factor Analysis using OpenMx'. This software is described in Pritikin & Falk (2020) <doi:10.1177/0146621620929431>.
Convert historical monetary values into their present-day equivalents using bundled CPI (Consumer Price Index) and GDP deflator data sourced from the World Bank Development Indicators. Supports British pounds (GBP), Australian dollars (AUD), US dollars (USD), Euro (EUR), Canadian dollars (CAD), Japanese yen (JPY), Chinese yuan (CNY), Swiss francs (CHF), New Zealand dollars (NZD), Indian rupees (INR), South Korean won (KRW), Brazilian reais (BRL), and Norwegian krone (NOK). Currency codes and country names are both accepted as input.
As a sequel to iNEXT', the iNEXT.beta3D package provides functions to compute standardized taxonomic, phylogenetic, and functional diversity (3D) estimates with a common sample size (for alpha and gamma diversity) or sample coverage (for alpha, beta, gamma diversity as well as dissimilarity or turnover indices). Hill numbers and their generalizations are used to quantify 3D and to make multiplicative decomposition (gamma = alpha x beta). The package also features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of beta diversity across datasets. See Chao et al. (2023) <doi:10.1002/ecm.1588> for more details.
The goal of image2data is to extract images and return them into a data set, especially for teaching data manipulation and data visualization. Basically, the eponymous function takes an image file ('png', tiff', jpeg', bmp') and turn it into a data set, pixels being rows (subjects) and columns (variables) being their coordinate positions (x- and y-axis) and their respective color (in hex codes). The function can return a complete image or a range of color (i.e., contour, silhouette). The data can then be manipulated as would any data set by either creating other related variables (to hide the image) or as a genuine toy data set.
The Importance Index (I.I.) can determine the loss and solution sources for a system in certain knowledge areas (e.g., agronomy), when production (e.g., fruits) is known (Demolin-Leite, 2021). Events (e.g., agricultural pest) can have different magnitudes (numerical measurements), frequencies, and distributions (aggregate, random, or regular) of event occurrence, and I.I. bases in this triplet (Demolin-Leite, 2021) <https://cjascience.com/index.php/CJAS/article/view/1009/1319>. Usually, the higher the magnitude and frequency of aggregated distribution, the greater the problem or the solution (e.g., natural enemies versus pests) for the system (Demolin-Leite, 2021). However, the final production of the system is not always known or is difficult to determine (e.g., degraded area recovery). A derivation of the I.I. is the percentage of Importance Index-Production Unknown (% I.I.-PU) that can detect the loss or solution sources, when production is unknown for the system (Demolin-Leite, 2024) <DOI:10.1590/1519-6984.253218>.
Multi-data type subtyping, which is data type agnostic and accepts missing data. Subtyping is performed using intermediary assessments created with autoencoders and similarity calculations. See Fox et al. (2024) <doi:10.1016/j.crmeth.2024.100884> for details.
This package provides native R access to Interactive Brokers Trader Workstation API.
This package implements the standard D-Scoring algorithm (Greenwald, Banaji, & Nosek, 2003) for Implicit Association Test (IAT) data and includes plotting capabilities for exploring raw IAT data.
This package provides tools to scrape, clean, and analyze football player data from Indonesian leagues and perform similarity-based scouting analysis using standardized numeric features. The similarity approach follows common vector-space methods as described in Manning et al. (2008, ISBN:9780521865715) and Salton et al. (1975, <doi:10.1145/361219.361220>).
Computes bilateral and multilateral index numbers. It has support for many standard bilateral indexes as well as multilateral index number methods such as GEKS, GEKS-Tornqvist (or CCDI), Geary-Khamis and the weighted time product dummy (for details on these methods see Diewert and Fox (2020) <doi:10.1080/07350015.2020.1816176>). It also supports updating of multilateral indexes using several splicing methods.
Estimates the intraclass correlation coefficient for trajectory data using a matrix of distances between trajectories. The distances implemented are the extended Hausdorff distances (Min et al. 2007) <doi:10.1080/13658810601073315> and the discrete Fréchet distance (Magdy et al. 2015) <doi:10.1109/IntelCIS.2015.7397286>.
This package performs hypothesis testing using the interval estimates (e.g., confidence intervals). The non-overlapping interval estimates indicates the statistical significance. References to these procedures can be found at Noguchi and Marmolejo-Ramos (2016) <doi:10.1080/00031305.2016.1200487>, Bonett and Seier (2003) <doi:10.1198/0003130032323>, and Lemm (2006) <doi:10.1300/J082v51n02_05>.
This package provides a shiny app that supports both dual and bulk RNA-seq, with the dual RNA-seq functionality offering the flexibility to perform either a sequential approach (where reads are mapped separately to each genome) or a combined approach (where reads are aligned to a single merged genome). The user-friendly interface automates the analysis process, providing step-by-step guidance, making it easy for users to navigate between different analysis steps, and download intermediate results and publication-ready plots.
Implementation of functions to assign corresponding common job prestige scores (SIOPS, ISEI), the official job or group title and the ISCO-88 code to given ISCO-08 codes. ISCO-08 is the latest version of the International Standard Classification of Occupations which is used to organise information on labour and jobs.
This package provides utility functions to deal with Italian fiscal code ('codice fiscale').