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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-lcmm 2.2.2
Propagated dependencies: r-survival@3.8-3 r-spacefillr@0.4.0 r-numderiv@2016.8-1.1 r-nlme@3.1-168 r-mvtnorm@1.3-3 r-marqlevalg@2.0.8 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cecileproust-lima.github.io/lcmm/
Licenses: GPL 2+
Build system: r
Synopsis: Extended Mixed Models Using Latent Classes and Latent Processes
Description:

Estimation of various extensions of the mixed models including latent class mixed models, joint latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).

r-laminr 1.2.2
Propagated dependencies: r-withr@3.0.2 r-sessioninfo@1.2.3 r-rlang@1.1.6 r-reticulate@1.44.1 r-r6@2.6.1 r-r-utils@2.13.0 r-purrr@1.2.0 r-pkgload@1.4.1 r-lifecycle@1.0.4 r-cli@3.6.5 r-callr@3.7.6
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://laminr.lamin.ai
Licenses: FSDG-compatible
Build system: r
Synopsis: Client for 'LaminDB'
Description:

Interact with LaminDB'. LaminDB is an open-source data framework for biology. This package allows you to query and download data from LaminDB instances.

r-ledger 2.0.11
Dependencies: hledger@1.27.1 beancount@2.3.6
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-rlang@1.1.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/trevorld/r-ledger
Licenses: Expat
Build system: r
Synopsis: Utilities for Importing Data from Plain Text Accounting Files
Description:

Utilities for querying plain text accounting files from Ledger', HLedger', and Beancount'.

r-link 2024.4.0
Propagated dependencies: r-xml2@1.5.0 r-stringr@1.6.0 r-rlang@1.1.6 r-knitr@1.50 r-httr2@1.2.1 r-htmltools@0.5.8.1 r-glue@1.8.0 r-downlit@0.4.5 r-bslib@0.9.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://link.tada.science/
Licenses: Expat
Build system: r
Synopsis: Hyperlink Automatic Detection
Description:

Automatic detection of hyperlinks for packages and calls in the text of rmarkdown or quarto documents.

r-lavinteract 0.4.6
Propagated dependencies: r-rlang@1.1.6 r-lavaan@0.6-20 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/g-corbelli/lavinteract
Licenses: GPL 3
Build system: r
Synopsis: Post-Estimation Utilities for 'lavaan' Fitted Models
Description:

Companion toolbox for structural equation models fitted with lavaan'. Provides post-estimation diagnostics and graphics that operate directly on a fitted object using its estimates and covariance, and refits auxiliary models when needed. The package relies on lavaan (Rosseel, 2012) <doi:10.18637/jss.v048.i02>.

r-lglasso 0.1.0
Propagated dependencies: r-glasso@1.11
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/jiezhou-2/lglasso
Licenses: GPL 3
Build system: r
Synopsis: Longitudinal Graphical Lasso
Description:

For high-dimensional correlated observations, this package carries out the L_1 penalized maximum likelihood estimation of the precision matrix (network) and the correlation parameters. The correlated data can be longitudinal data (may be irregularly spaced) with dampening correlation or clustered data with uniform correlation. For the details of the algorithms, please see the paper Jie Zhou et al. Identifying Microbial Interaction Networks Based on Irregularly Spaced Longitudinal 16S rRNA sequence data <doi:10.1101/2021.11.26.470159>.

r-latentbma 0.1.2
Propagated dependencies: r-reshape2@1.4.5 r-progress@1.2.3 r-mnormt@2.1.1 r-knitr@1.50 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LatentBMA
Licenses: Expat
Build system: r
Synopsis: Bayesian Model Averaging for Univariate Link Latent Gaussian Models
Description:

Bayesian model averaging (BMA) algorithms for univariate link latent Gaussian models (ULLGMs). For detailed information, refer to Steel M.F.J. & Zens G. (2024) "Model Uncertainty in Latent Gaussian Models with Univariate Link Function" <doi:10.48550/arXiv.2406.17318>. The package supports various g-priors and a beta-binomial prior on the model space. It also includes auxiliary functions for visualizing and tabulating BMA results. Currently, it offers an out-of-the-box solution for model averaging of Poisson log-normal (PLN) and binomial logistic-normal (BiL) models. The codebase is designed to be easily extendable to other likelihoods, priors, and link functions.

r-lsmontecarlo 1.0
Propagated dependencies: r-mvtnorm@1.3-3 r-fbasics@4041.97
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LSMonteCarlo
Licenses: GPL 3
Build system: r
Synopsis: American options pricing with Least Squares Monte Carlo method
Description:

The package compiles functions for calculating prices of American put options with Least Squares Monte Carlo method. The option types are plain vanilla American put, Asian American put, and Quanto American put. The pricing algorithms include variance reduction techniques such as Antithetic Variates and Control Variates. Additional functions are given to derive "price surfaces" at different volatilities and strikes, create 3-D plots, quickly generate Geometric Brownian motion, and calculate prices of European options with Black & Scholes analytical solution.

r-legit 1.4.1
Propagated dependencies: r-snow@0.4-4 r-rcolorbrewer@1.1-3 r-proc@1.19.0.1 r-lme4@1.1-37 r-iterators@1.0.14 r-hmisc@5.2-4 r-glmnet@4.1-10 r-formula-tools@1.7.1 r-foreach@1.5.2 r-dosnow@1.0.20 r-boot@1.3-32
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LEGIT
Licenses: GPL 3
Build system: r
Synopsis: Latent Environmental & Genetic InTeraction (LEGIT) Model
Description:

Constructs genotype x environment interaction (GxE) models where G is a weighted sum of genetic variants (genetic score) and E is a weighted sum of environments (environmental score) using the alternating optimization algorithm by Jolicoeur-Martineau et al. (2017) <arXiv:1703.08111>. This approach has greatly enhanced predictive power over traditional GxE models which include only a single genetic variant and a single environmental exposure. Although this approach was originally made for GxE modelling, it is flexible and does not require the use of genetic and environmental variables. It can also handle more than 2 latent variables (rather than just G and E) and 3-way interactions or more. The LEGIT model produces highly interpretable results and is very parameter-efficient thus it can even be used with small sample sizes (n < 250). Tools to determine the type of interaction (vantage sensitivity, diathesis-stress or differential susceptibility), with any number of genetic variants or environments, are available <arXiv:1712.04058>. The software can now produce mixed-effects LEGIT models through the lme4 package.

r-lira 2.0.1
Dependencies: jags@4.3.1
Propagated dependencies: r-rjags@4-17 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lira
Licenses: GPL 2
Build system: r
Synopsis: LInear Regression in Astronomy
Description:

This package performs Bayesian linear regression and forecasting in astronomy. The method accounts for heteroscedastic errors in both the independent and the dependent variables, intrinsic scatters (in both variables) and scatter correlation, time evolution of slopes, normalization, scatters, Malmquist and Eddington bias, upper limits and break of linearity. The posterior distribution of the regression parameters is sampled with a Gibbs method exploiting the JAGS library.

r-lst 2.0.0
Propagated dependencies: r-terra@1.8-86
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LST
Licenses: AGPL 3
Build system: r
Synopsis: Land Surface Temperature Retrieval for Landsat 8
Description:

Calculates Land Surface Temperature from Landsat band 10 and 11. Revision of the Single-Channel Algorithm for Land Surface Temperature Retrieval From Landsat Thermal-Infrared Data. Jimenez-Munoz JC, Cristobal J, Sobrino JA, et al (2009). <doi: 10.1109/TGRS.2008.2007125>. Land surface temperature retrieval from LANDSAT TM 5. Sobrino JA, Jiménez-Muñoz JC, Paolini L (2004). <doi:10.1016/j.rse.2004.02.003>. Surface temperature estimation in Singhbhum Shear Zone of India using Landsat-7 ETM+ thermal infrared data. Srivastava PK, Majumdar TJ, Bhattacharya AK (2009). <doi: 10.1016/j.asr.2009.01.023>. Mapping land surface emissivity from NDVI: Application to European, African, and South American areas. Valor E (1996). <doi:10.1016/0034-4257(96)00039-9>. On the relationship between thermal emissivity and the normalized difference vegetation index for natural surfaces. Van de Griend AA, Owe M (1993). <doi:10.1080/01431169308904400>. Land Surface Temperature Retrieval from Landsat 8 TIRSâ Comparison between Radiative Transfer Equation-Based Method, Split Window Algorithm and Single Channel Method. Yu X, Guo X, Wu Z (2014). <doi:10.3390/rs6109829>. Calibration and Validation of land surface temperature for Landsat8-TIRS sensor. Land product validation and evolution. SkokoviÄ D, Sobrino JA, Jimenez-Munoz JC, Soria G, Julien Y, Mattar C, Cristóbal J. (2014).

r-leadsense 0.0.2.0
Propagated dependencies: r-tidyr@1.3.1 r-signal@1.8-1 r-seewave@2.2.4 r-reshape2@1.4.5 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LeadSense
Licenses: Expat
Build system: r
Synopsis: Medtronic Brain Sense Local Field Potencial Analysis
Description:

Extracts and creates an analysis pipeline for the JSON data files from Brain Sense sessions using Medtronic's Deep Brain Stimulation surgery electrode implants.

r-lavaanplot 0.8.1
Propagated dependencies: r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-lavaan@0.6-20 r-dplyr@1.1.4 r-diagrammer@1.0.11
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/alishinski/lavaanPlot
Licenses: GPL 2+
Build system: r
Synopsis: Path Diagrams for 'Lavaan' Models via 'DiagrammeR'
Description:

Plots path diagrams from models in lavaan using the plotting functionality from the DiagrammeR package. DiagrammeR provides nice path diagrams via Graphviz', and these functions make it easy to generate these diagrams from a lavaan path model without having to write the DOT language graph specification.

r-leadercluster 1.5
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=leaderCluster
Licenses: LGPL 2.0
Build system: r
Synopsis: Leader Clustering Algorithm
Description:

The leader clustering algorithm provides a means for clustering a set of data points. Unlike many other clustering algorithms it does not require the user to specify the number of clusters, but instead requires the approximate radius of a cluster as its primary tuning parameter. The package provides a fast implementation of this algorithm in n-dimensions using Lp-distances (with special cases for p=1,2, and infinity) as well as for spatial data using the Haversine formula, which takes latitude/longitude pairs as inputs and clusters based on great circle distances.

r-labtnscpss 1.0
Propagated dependencies: r-stringi@1.8.7 r-purrr@1.2.0 r-lubridate@1.9.4 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/bayaniazadeh/LabTNSCPSSPackage
Licenses: GPL 3
Build system: r
Synopsis: Calculation of Comorbidity and Frailty Scores
Description:

Computes comorbidity indices and combined frailty scores for multiple ICD coding systems, including ICD-10-CA, ICD-10-CM, and ICD-11. The package provides tools to preprocess episode data, map diagnosis codes to chronic categories, propagate conditions across episodes, and generate comorbidity and frailty measures. The methods implemented are original to this package and were developed by the authors for research applications; a manuscript describing the methodology is currently in preparation.

r-lilikoi 2.1.1
Propagated dependencies: r-survminer@0.5.1 r-survival@3.8-3 r-stringr@1.6.0 r-scales@1.4.0 r-rweka@0.4-47 r-reticulate@1.44.1 r-reshape@0.8.10 r-rcy3@2.30.0 r-proc@1.19.0.1 r-princurve@2.1.6 r-preprocesscore@1.72.0 r-plyr@1.8.9 r-pathview@1.50.0 r-mlmetrics@1.1.3 r-metrics@0.1.4 r-m3c@1.32.0 r-limma@3.66.0 r-infotheo@1.2.0.1 r-impute@1.84.0 r-h2o@3.44.0.3 r-glmnet@4.1-10 r-ggplot2@4.0.1 r-gbm@2.2.2 r-dplyr@1.1.4 r-caret@7.0-1 r-car@3.1-3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lilikoi
Licenses: GPL 2
Build system: r
Synopsis: Metabolomics Personalized Pathway Analysis Tool
Description:

This package provides a comprehensive analysis tool for metabolomics data. It consists a variety of functional modules, including several new modules: a pre-processing module for normalization and imputation, an exploratory data analysis module for dimension reduction and source of variation analysis, a classification module with the new deep-learning method and other machine-learning methods, a prognosis module with cox-PH and neural-network based Cox-nnet methods, and pathway analysis module to visualize the pathway and interpret metabolite-pathway relationships. References: H. Paul Benton <http://www.metabolomics-forum.com/index.php?topic=281.0> Jeff Xia <https://github.com/cangfengzhe/Metabo/blob/master/MetaboAnalyst/website/name_match.R> Travers Ching, Xun Zhu, Lana X. Garmire (2018) <doi:10.1371/journal.pcbi.1006076>.

r-luajr 0.2.2
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/nicholasdavies/luajr
Licenses: Expat
Build system: r
Synopsis: 'LuaJIT' Scripting
Description:

An interface to LuaJIT <https://luajit.org>, a just-in-time compiler for the Lua scripting language <https://www.lua.org>. Allows users to run Lua code from R'.

r-lwfbrook90r 0.6.3
Propagated dependencies: r-vegperiod@0.4.0 r-progressr@0.18.0 r-parallelly@1.45.1 r-iterators@1.0.14 r-future@1.68.0 r-foreach@1.5.2 r-dofuture@1.1.2 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://pschmidtwalter.github.io/LWFBrook90R/
Licenses: GPL 3
Build system: r
Synopsis: Simulate Evapotranspiration and Soil Moisture with the SVAT Model LWF-Brook90
Description:

This package provides a flexible and easy-to use interface for the soil vegetation atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran. The model simulates daily transpiration, interception, soil and snow evaporation, streamflow and soil water fluxes through a soil profile covered with vegetation, as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003) <doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions for model set up, execution and parallelization provides easy access to plot-level SVAT simulations, as well as multi-run and large-scale applications.

r-l2hdchange 1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=L2hdchange
Licenses: GPL 3+
Build system: r
Synopsis: L2 Inference for Change Points in High-Dimensional Time Series
Description:

This package provides a method for detecting multiple change points in high-dimensional time series, targeting dense or spatially clustered signals. See Li et al. (2023) "L2 Inference for Change Points in High-Dimensional Time Series via a Two-Way MOSUM". arXiv preprint <arXiv:2208.13074>.

r-lovecraftr 1.2.0
Propagated dependencies: r-stringr@1.6.0 r-rvest@1.0.5 r-magrittr@2.0.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/SergejRuff/lovecraftr
Licenses: GPL 3+
Build system: r
Synopsis: Collection of Lovecraftian Tales and Texts
Description:

This package provides a curated collection of Howard Phillips Lovecraft's complete stories, collected for the purpose of text analysis.

r-llsr 0.0.3.1
Propagated dependencies: r-svglite@2.2.2 r-svdialogs@1.1.1 r-rootsolve@1.8.2.4 r-openxlsx@4.2.8.1 r-nleqslv@3.3.5 r-minpack-lm@1.2-4 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-digest@0.6.39 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://CRAN.R-project.org/package=LLSR
Licenses: GPL 3
Build system: r
Synopsis: Data Analysis of Liquid-Liquid Systems using R
Description:

Originally design to characterise Aqueous Two Phase Systems, LLSR provide a simple way to analyse experimental data and obtain phase diagram parameters, among other properties, systematically. The package will include (every other update) new functions in order to comprise useful tools in liquid-liquid extraction research.

r-lsasim 2.1.6
Propagated dependencies: r-polycor@0.8-1 r-mvtnorm@1.3-3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lsasim
Licenses: GPL 3
Build system: r
Synopsis: Functions to Facilitate the Simulation of Large Scale Assessment Data
Description:

This package provides functions to simulate data from large-scale educational assessments, including background questionnaire data and cognitive item responses that adhere to a multiple-matrix sampled design. The theoretical foundation can be found on Matta, T.H., Rutkowski, L., Rutkowski, D. et al. (2018) <doi:10.1186/s40536-018-0068-8>.

r-litfetchr 0.2.1
Propagated dependencies: r-xml2@1.5.0 r-readxl@1.4.5 r-purrr@1.2.0 r-openxlsx@4.2.8.1 r-jsonlite@2.0.0 r-httr@1.4.7 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/thomasdumond/LitFetchR
Licenses: Expat
Build system: r
Synopsis: Automatically Fetching References Metadata from Literature Databases
Description:

This package provides functions to automatically retrieve and deduplicate reference metadata based on saved search strings. Access to Web of Science and Scopus requires personal API keys, while PubMed can be queried without one. The optional deduplication functionality requires the package ASySD available from <https://github.com/camaradesuk/ASySD>.

r-lcpm 0.1.1
Propagated dependencies: r-plyr@1.8.9 r-numderiv@2016.8-1.1 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lcpm
Licenses: GPL 3
Build system: r
Synopsis: Ordinal Outcomes: Generalized Linear Models with the Log Link
Description:

An implementation of the Log Cumulative Probability Model (LCPM) and Proportional Probability Model (PPM) for which the Maximum Likelihood Estimates are determined using constrained optimization. This implementation accounts for the implicit constraints on the parameter space. Other features such as standard errors, z tests and p-values use standard methods adapted from the results based on constrained optimization.

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