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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-orkm 1.0.0
Propagated dependencies: r-matrix@1.7-4 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=ORKM
Licenses: Expat
Build system: r
Synopsis: The Online Regularized K-Means Clustering Algorithm
Description:

Algorithm of online regularized k-means to deal with online multi(single) view data. The philosophy of the package is described in Guo G. (2024) <doi:10.1016/j.ins.2024.121133>.

r-ohenery 0.1.4
Propagated dependencies: r-rcpp@1.1.0 r-maxlik@1.5-2.1 r-magrittr@2.0.4 r-generics@0.1.4 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/shabbychef/ohenery
Licenses: LGPL 3
Build system: r
Synopsis: Modeling of Ordinal Random Variables via Softmax Regression
Description:

Supports the modeling of ordinal random variables, like the outcomes of races, via Softmax regression, under the Harville <doi:10.1080/01621459.1973.10482425> and Henery <doi:10.1111/j.2517-6161.1981.tb01153.x> models.

r-ordinalgmifs 1.0.9
Propagated dependencies: r-survival@3.8-3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=ordinalgmifs
Licenses: GPL 2+
Build system: r
Synopsis: Ordinal Regression for High-Dimensional Data
Description:

This package provides a function for fitting cumulative link, adjacent category, forward and backward continuation ratio, and stereotype ordinal response models when the number of parameters exceeds the sample size, using the the generalized monotone incremental forward stagewise method.

r-orionz-g 1.0.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=ORIONZ.G
Licenses: GPL 3
Build system: r
Synopsis: EAP Scoring in Exploratory FA Solutions with Correlated Residuals
Description:

Obtaining Bayes Expected A Posteriori (EAP) individual score estimates based on linear and non-linear extended Exploratoy Factor Analysis solutions that include a correlated-residual structure.

r-omicsqc 1.1.1
Propagated dependencies: r-lsa@0.73.3 r-fitdistrplus@1.2-4 r-boutroslab-plotting-general@7.1.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OmicsQC
Licenses: GPL 2
Build system: r
Synopsis: Nominating Quality Control Outliers in Genomic Profiling Studies
Description:

This package provides a method that analyzes quality control metrics from multi-sample genomic sequencing studies and nominates poor quality samples for exclusion. Per sample quality control data are transformed into z-scores and aggregated. The distribution of aggregated z-scores are modelled using parametric distributions. The parameters of the optimal model, selected either by goodness-of-fit statistics or user-designation, are used for outlier nomination. Two implementations of the Cosine Similarity Outlier Detection algorithm are provided with flexible parameters for dataset customization.

r-odiffr 0.5.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/BenWolst/odiffr
Licenses: Expat
Build system: r
Synopsis: Fast Pixel-by-Pixel Image Comparison Using 'odiff'
Description:

R bindings to odiff', a blazing-fast pixel-by-pixel image comparison tool <https://github.com/dmtrKovalenko/odiff>. Supports PNG, JPEG, WEBP, and TIFF with configurable thresholds, antialiasing detection, and region ignoring. Requires system installation of odiff'. Ideal for visual regression testing in automated workflows.

r-obsmd 12.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OBsMD
Licenses: GPL 2+
Build system: r
Synopsis: Objective Bayesian Model Discrimination in Follow-Up Designs
Description:

This package implements the objective Bayesian methodology proposed in Consonni and Deldossi in order to choose the optimal experiment that better discriminate between competing models, see Deldossi and Nai Ruscone (2020) <doi:10.18637/jss.v094.i02>.

r-osrm 5.0.0
Propagated dependencies: r-sf@1.0-23 r-rcppsimdjson@0.1.15 r-mapiso@0.3.0 r-googlepolylines@0.8.7 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/riatelab/osrm
Licenses: GPL 3+
Build system: r
Synopsis: Interface Between R and the OpenStreetMap-Based Routing Service OSRM
Description:

An interface between R and the OSRM API. OSRM is a routing service based on OpenStreetMap data. See <http://project-osrm.org/> for more information. This package enables the computation of routes, trips, isochrones and travel distances matrices (travel time and kilometric distance).

r-oacolors 0.0.4
Propagated dependencies: r-rcolorbrewer@1.1-3 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: http://www.openanalytics.eu
Licenses: FSDG-compatible
Build system: r
Synopsis: OpenAnalytics Colors Package
Description:

This package provides carefully chosen color palettes as used a.o. at OpenAnalytics <http://www.openanalytics.eu>.

r-omopviewer 0.7.0
Propagated dependencies: r-yaml@2.3.10 r-visomopresults@1.4.2 r-usethis@3.2.1 r-tidyr@1.3.1 r-styler@1.11.0 r-stringr@1.6.0 r-snakecase@0.11.1 r-shiny@1.11.1 r-rlang@1.1.6 r-purrr@1.2.0 r-omopgenerics@1.3.7 r-markdown@2.0 r-lifecycle@1.0.4 r-gt@1.3.0 r-glue@1.8.0 r-dt@0.34.0 r-dplyr@1.1.4 r-cli@3.6.5 r-bslib@0.9.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://ohdsi.github.io/OmopViewer/
Licenses: FSDG-compatible
Build system: r
Synopsis: Visualise OMOP Results using 'shiny' Applications
Description:

Visualise results obtained from analysing data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model using shiny applications.

r-oarray 1.4-9
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=Oarray
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Arrays with Arbitrary Offsets
Description:

Generalise the starting point of the array index.

r-omoponspark 0.1.0
Propagated dependencies: r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-omopgenerics@1.3.7 r-glue@1.8.0 r-dplyr@1.1.4 r-dbplyr@2.5.1 r-dbi@1.2.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://OHDSI.github.io/OmopOnSpark/
Licenses: FSDG-compatible
Build system: r
Synopsis: Using a Common Data Model on 'Spark'
Description:

Use health data in the Observational Medical Outcomes Partnership Common Data Model format in Spark'. Functionality includes creating all required tables and fields and creation of a single reference to the data. Native Spark functionality is supported.

r-obaspatial 1.9
Propagated dependencies: r-truncdist@1.0-2 r-mvtnorm@1.3-3 r-modeest@2.4.0 r-laplacesdemon@16.1.6 r-invgamma@1.2 r-hdinterval@0.2.4 r-cubature@2.1.4-1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OBASpatial
Licenses: GPL 2+
Build system: r
Synopsis: Objective Bayesian Analysis for Spatial Regression Models
Description:

It makes an objective Bayesian analysis of the spatial regression model using both the normal (NSR) and student-T (TSR) distributions. The functions provided give prior and posterior objective densities and allow default Bayesian estimation of the model regression parameters. Details can be found in Ordonez et al. (2020) <arXiv:2004.04341>.

r-oglcnac 0.1.5
Propagated dependencies: r-shiny@1.11.1 r-readxl@1.4.5 r-jsonlite@2.0.0 r-httr@1.4.7 r-glue@1.8.0 r-dt@0.34.0 r-cli@3.6.5 r-bslib@0.9.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=oglcnac
Licenses: GPL 3
Build system: r
Synopsis: Processing and Analysis of 'O-GlcNAcAtlas' Data
Description:

This package provides tools for processing and analyzing data from the O-GlcNAcAtlas database <https://oglcnac.org/>, as described in Ma (2021) <doi:10.1093/glycob/cwab003>. It integrates UniProt <https://www.uniprot.org/> API calls to retrieve additional information. It is specifically designed for research workflows involving O-GlcNAcAtlas data, providing a flexible and user-friendly interface for customizing and downloading processed results. Interactive elements allow users to easily adjust parameters and handle various biological datasets.

r-openspecy 1.5.3
Propagated dependencies: r-yaml@2.3.10 r-signal@1.8-1 r-shiny@1.11.1 r-plotly@4.11.0 r-mmand@1.6.3 r-jsonlite@2.0.0 r-jpeg@0.1-11 r-hyperspec@0.100.3 r-glmnet@4.1-10 r-digest@0.6.39 r-data-table@1.17.8 r-catools@1.18.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/wincowgerDEV/OpenSpecy-package/
Licenses: FSDG-compatible
Build system: r
Synopsis: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Description:

Raman and (FT)IR spectral analysis tool for plastic particles and other environmental samples (Cowger et al. 2021, <doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a single function for reading individual, batch, or map spectral data files like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies processing spectra, including smoothing, baseline correction, range restriction and flattening, intensity conversions, wavenumber alignment, and min-max normalization. Spectra can be identified in batch using an onboard reference library (Cowger et al. 2020, <doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available via run_app() or online at <https://www.openanalysis.org/openspecy/>.

r-offsetreg 1.1.1
Propagated dependencies: r-rlang@1.1.6 r-poissonreg@1.0.1 r-parsnip@1.3.3 r-glue@1.8.0 r-generics@0.1.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/mattheaphy/offsetreg/
Licenses: Expat
Build system: r
Synopsis: An Extension of 'Tidymodels' Supporting Offset Terms
Description:

Extend the tidymodels ecosystem <https://www.tidymodels.org/> to enable the creation of predictive models with offset terms. Models with offsets are most useful when working with count data or when fitting an adjustment model on top of an existing model with a prior expectation. The former situation is common in insurance where data is often weighted by exposures. The latter is common in life insurance where industry mortality tables are often used as a starting point for setting assumptions.

r-omicwas 0.8.0
Propagated dependencies: r-tidyr@1.3.1 r-rlang@1.1.6 r-purrr@1.2.0 r-matrixstats@1.5.0 r-mass@7.3-65 r-magrittr@2.0.4 r-glmnet@4.1-10 r-ff@4.5.2 r-dplyr@1.1.4 r-data-table@1.17.8 r-broom@1.0.10
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/fumi-github/omicwas
Licenses: GPL 3
Build system: r
Synopsis: Cell-Type-Specific Association Testing in Bulk Omics Experiments
Description:

In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".

r-onsvplot 0.3.2
Propagated dependencies: r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/pabsantos/onsvplot/
Licenses: Expat
Build system: r
Synopsis: National Road Safety Observatory (ONSV) Style for 'ggplot2' Graphics
Description:

Helps to create ggplot2 charts in the style used by the National Road Safety Observatory (ONSV). The package includes functions to customize ggplot2 objects with new theme and colors.

r-opimputation 0.6
Propagated dependencies: r-twosamples@2.0.1 r-rfit@0.27.0 r-reshape2@1.4.5 r-progressr@0.18.0 r-multius@1.2.3 r-missforest@1.6.1 r-miceranger@1.5.0 r-mice@3.18.0 r-mi@1.2 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-ggh4x@0.3.1 r-future-apply@1.20.0 r-future@1.68.0 r-datavisualizations@1.4.0 r-cowplot@1.2.0 r-caret@7.0-1 r-amelia@1.8.3 r-abind@1.4-8 r-abcanalysis@1.2.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/JornLotsch/opImputation
Licenses: GPL 3
Build system: r
Synopsis: Optimal Selection of Imputation Methods for Pain-Related Numerical Data
Description:

This package provides a model-agnostic framework for selecting dataset-specific imputation methods for missing values in numerical data related to pain. Lotsch J, Ultsch A (2025) "A model-agnostic framework for dataset-specific selection of missing value imputation methods in pain-related numerical data" Canadian Journal of Pain (in minor revision).

r-openhimr 0.1.1
Propagated dependencies: r-tidyverse@2.0.0 r-stringr@1.6.0 r-splitstackshape@1.4.8 r-seqinr@4.2-36 r-rcurl@1.98-1.17 r-randomforest@4.7-1.2 r-party@1.3-18 r-gbm@2.2.2 r-ftrcool@2.0.0 r-entropy@1.3.2 r-e1071@1.7-16 r-dplyr@1.1.4 r-devtools@2.4.6 r-caret@7.0-1 r-biostrings@2.78.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OpEnHiMR
Licenses: GPL 3
Build system: r
Synopsis: Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice
Description:

The comprehensive knowledge of epigenetic modifications in plants, encompassing histone modifications in regulating gene expression, is not completely ingrained. It is noteworthy that histone deacetylation and histone H3 lysine 27 trimethylation (H3K27me3) play a role in repressing transcription in eukaryotes. In contrast, histone acetylation (H3K9ac) and H3K4me3 have been inevitably linked to the stimulation of gene expression, which significantly influences plant development and plays a role in plant responses to biotic and abiotic stresses. To our knowledge this the first multiclass classifier for predicting histone modification in plants. <doi:10.1186/s12864-019-5489-4>.

r-operators 0.1-8
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/romainfrancois/operators
Licenses: Expat
Build system: r
Synopsis: Additional Binary Operators
Description:

This package provides a set of binary operators for common tasks such as regex manipulation.

r-officedown 0.4.1
Propagated dependencies: r-yaml@2.3.10 r-xml2@1.5.0 r-uuid@1.2-1 r-rvg@0.4.1 r-rmarkdown@2.30 r-rlang@1.1.6 r-officer@0.7.1 r-memoise@2.0.1 r-knitr@1.50
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://ardata-fr.github.io/officeverse/
Licenses: Expat
Build system: r
Synopsis: Enhanced 'R Markdown' Format for 'Word' and 'PowerPoint'
Description:

Allows production of Microsoft corporate documents from R Markdown by reusing formatting defined in Microsoft Word documents. You can reuse table styles, list styles but also add column sections, landscape oriented pages. Table and image captions as well as cross-references are transformed into Microsoft Word fields, allowing documents edition and merging without issue with references; the syntax conforms to the bookdown cross-reference definition. Objects generated by the officer package are also supported in the knitr chunks. Microsoft PowerPoint presentations also benefit from this as well as the ability to produce editable vector graphics in PowerPoint and also to define placeholder where content is to be added.

r-openscoring 1.0.6
Propagated dependencies: r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-lifecycle@1.0.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-glue@1.8.0 r-dplyr@1.1.4 r-curl@7.0.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/jakub-jedrusiak/openscoring
Licenses: Expat
Build system: r
Synopsis: 'Open Scoring' API Client
Description:

Creativity research involves the need to score open-ended problems. Usually done by humans, automatic scoring using AI becomes more and more accurate. This package provides a simple interface to the Open Scoring API <https://openscoring.du.edu/docs>, leading creativity scoring technology by Organiscak et al. (2023) <doi:10.1016/j.tsc.2023.101356>. With it, you can score your own data directly from an R script.

r-optimmodel 2.0-3
Propagated dependencies: r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OptimModel
Licenses: GPL 2
Build system: r
Synopsis: Perform Nonlinear Regression Using 'optim' as the Optimization Engine
Description:

This package provides a wrapper for optim for nonlinear regression problems; see Nocedal J and Write S (2006, ISBN: 978-0387-30303-1). Performs ordinary least squares (OLS), iterative re-weighted least squares (IRWLS), and maximum likelihood (MLE). Also includes the robust outlier detection (ROUT) algorithm; see Motulsky, H and Brown, R (2006) <doi:10.1186/1471-2105-7-123>.

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