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\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-postm 1.4
Propagated dependencies: r-compquadform@1.4.4 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=POSTm
Licenses: GPL 2
Build system: r
Synopsis: Phylogeny-Guided OTU-Specific Association Test for Microbiome Data
Description:

This package implements the Phylogeny-Guided Microbiome OTU-Specific Association Test method, which boosts the testing power by adaptively borrowing information from phylogenetically close OTUs (operational taxonomic units) of the target OTU. This method is built on a kernel machine regression framework and allows for flexible modeling of complex microbiome effects, adjustments for covariates, and can accommodate both continuous and binary outcomes.

r-psychtools 2.5.7.22
Propagated dependencies: r-rtf@0.4-14.1 r-psych@2.5.6 r-foreign@0.8-90
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=psychTools
Licenses: GPL 2+
Build system: r
Synopsis: Tools to Accompany the 'psych' Package for Psychological Research
Description:

Support functions, data sets, and vignettes for the psych package. Contains several of the biggest data sets for the psych package as well as four vignettes. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.

r-pagedown 0.23
Dependencies: pandoc@2.19.2
Propagated dependencies: r-xfun@0.54 r-websocket@1.4.4 r-servr@0.32 r-rmarkdown@2.30 r-processx@3.8.6 r-later@1.4.4 r-jsonlite@2.0.0 r-httpuv@1.6.16 r-htmltools@0.5.8.1 r-bookdown@0.45
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/rstudio/pagedown
Licenses: Expat
Build system: r
Synopsis: Paginate the HTML Output of R Markdown with CSS for Print
Description:

Use the paged media properties in CSS and the JavaScript library paged.js to split the content of an HTML document into discrete pages. Each page can have its page size, page numbers, margin boxes, and running headers, etc. Applications of this package include books, letters, reports, papers, business cards, resumes, and posters.

r-pgrdup 0.2.4.0
Propagated dependencies: r-stringi@1.8.7 r-stringdist@0.9.15 r-igraph@2.2.1 r-gridextra@2.3 r-ggplot2@4.0.1 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PGRdup
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Discover Probable Duplicates in Plant Genetic Resources Collections
Description:

This package provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using passport databases comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

r-predtoolsts 0.1.1
Propagated dependencies: r-tspred@5.1.1 r-tseries@0.10-58 r-metrics@0.1.4 r-forecast@8.24.0 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/avm00016/predtoolsTS
Licenses: GPL 2+
Build system: r
Synopsis: Time Series Prediction Tools
Description:

Makes the time series prediction easier by automatizing this process using four main functions: prep(), modl(), pred() and postp(). Features different preprocessing methods to homogenize variance and to remove trend and seasonality. Also has the potential to bring together different predictive models to make comparatives. Features ARIMA and Data Mining Regression models (using caret).

r-predictabel 1.2-4
Propagated dependencies: r-rocr@1.0-11 r-pbsmodelling@2.70.2 r-lazyeval@0.2.2 r-hmisc@5.2-4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PredictABEL
Licenses: GPL 2+
Build system: r
Synopsis: Assessment of Risk Prediction Models
Description:

We included functions to assess the performance of risk models. The package contains functions for the various measures that are used in empirical studies, including univariate and multivariate odds ratios (OR) of the predictors, the c-statistic (or area under the receiver operating characteristic (ROC) curve (AUC)), Hosmer-Lemeshow goodness of fit test, reclassification table, net reclassification improvement (NRI) and integrated discrimination improvement (IDI). Also included are functions to create plots, such as risk distributions, ROC curves, calibration plot, discrimination box plot and predictiveness curves. In addition to functions to assess the performance of risk models, the package includes functions to obtain weighted and unweighted risk scores as well as predicted risks using logistic regression analysis. These logistic regression functions are specifically written for models that include genetic variables, but they can also be applied to models that are based on non-genetic risk factors only. Finally, the package includes function to construct a simulated dataset with genotypes, genetic risks, and disease status for a hypothetical population, which is used for the evaluation of genetic risk models.

r-phylosamp 1.0.1
Propagated dependencies: r-rlang@1.1.6 r-lifecycle@1.0.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/HopkinsIDD/phylosamp
Licenses: GPL 2
Build system: r
Synopsis: Sample Size Calculations for Molecular and Phylogenetic Studies
Description:

This package implements novel tools for estimating sample sizes needed for phylogenetic studies, including studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).

r-prf 1.2
Propagated dependencies: r-reshape2@1.4.5 r-randomforest@4.7-1.2 r-permute@0.9-8 r-multtest@2.66.0 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pRF
Licenses: GPL 3
Build system: r
Synopsis: Permutation Significance for Random Forests
Description:

Estimate False Discovery Rates (FDRs) for importance metrics from random forest runs.

r-preputils 1.0.3
Propagated dependencies: r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=preputils
Licenses: GPL 3
Build system: r
Synopsis: Utilities for Preparation of Data Analysis
Description:

Miscellaneous small utilities are provided to mitigate issues with messy, inconsistent or high dimensional data and help for preprocessing and preparing analyses.

r-precast 1.8
Propagated dependencies: r-seurat@5.3.1 r-scater@1.38.0 r-scales@1.4.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-purrr@1.2.0 r-pbapply@1.7-4 r-patchwork@1.3.2 r-mclust@6.1.2 r-matrix@1.7-4 r-mass@7.3-65 r-irlba@2.3.5.1 r-harmony@1.2.4 r-gtools@3.9.5 r-ggthemes@5.1.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-dr-sc@3.7 r-dplyr@1.1.4 r-cowplot@1.2.0 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/feiyoung/PRECAST
Licenses: GPL 3
Build system: r
Synopsis: Embedding and Clustering with Alignment for Spatial Omics Datasets
Description:

An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.

r-pastboon 0.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pastboon
Licenses: Artistic License 2.0
Build system: r
Synopsis: Simulation of Parameterized Stochastic Boolean Networks
Description:

This package provides a Boolean network is a particular kind of discrete dynamical system where the variables are simple binary switches. Despite its simplicity, Boolean network modeling has been a successful method to describe the behavioral pattern of various phenomena. Applying stochastic noise to Boolean networks is a useful approach for representing the effects of various perturbing stimuli on complex systems. A number of methods have been developed to control noise effects on Boolean networks using parameters integrated into the update rules. This package provides functions to examine three such methods: Boolean network with perturbations (BNp), described by Trairatphisan et al. (2013) <doi:10.1186/1478-811X-11-46>, stochastic discrete dynamical systems (SDDS), proposed by Murrugarra et al. (2012) <doi:10.1186/1687-4153-2012-5>, and Boolean network with probabilistic edge weights (PEW), presented by Deritei et al. (2022) <doi:10.1371/journal.pcbi.1010536>. This package includes source code derived from the BoolNet package, which is licensed under the Artistic License 2.0.

r-permchacko 1.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://ocbe-uio.github.io/permChacko/
Licenses: GPL 3+
Build system: r
Synopsis: Chacko Test for Order-Restriction with Permutation
Description:

This package implements an extension of the Chacko chi-square test for ordered vectors (Chacko, 1966, <https://www.jstor.org/stable/25051572>). Our extension brings the Chacko test to the computer age by implementing a permutation test to offer a numeric estimate of the p-value, which is particularly useful when the analytic solution is not available.

r-pdxpower 1.0.5
Propagated dependencies: r-survival@3.8-3 r-nlme@3.1-168 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-ggplot2@4.0.1 r-frailtypack@3.8.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PDXpower
Licenses: GPL 2+
Build system: r
Synopsis: Time to Event Outcome in Experimental Designs of Pre-Clinical Studies
Description:

Conduct simulation-based customized power calculation for clustered time to event data in a mixed crossed/nested design, where a number of cell lines and a number of mice within each cell line are considered to achieve a desired statistical power, motivated by Eckel-Passow and colleagues (2021) <doi:10.1093/neuonc/noab137> and Li and colleagues (2025) <doi:10.51387/25-NEJSDS76>. This package provides two commonly used models for powering a design, linear mixed effects and Cox frailty model. Both models account for within-subject (cell line) correlation while holding different distributional assumptions about the outcome. Alternatively, the counterparts of fixed effects model are also available, which produces similar estimates of statistical power.

r-psychwordvec 2025.11
Propagated dependencies: r-vroom@1.6.6 r-stringr@1.6.0 r-rtsne@0.17 r-rgl@1.3.31 r-qgraph@1.9.8 r-purrr@1.2.0 r-psych@2.5.6 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-corrplot@0.95 r-cli@3.6.5 r-brucer@2026.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://psychbruce.github.io/PsychWordVec/
Licenses: GPL 3
Build system: r
Synopsis: Word Embedding Research Framework for Psychological Science
Description:

An integrative toolbox of word embedding research that provides: (1) a collection of pre-trained static word vectors in the .RData compressed format <https://psychbruce.github.io/WordVector_RData.pdf>; (2) a group of functions to process, analyze, and visualize word vectors; (3) a range of tests to examine conceptual associations, including the Word Embedding Association Test <doi:10.1126/science.aal4230> and the Relative Norm Distance <doi:10.1073/pnas.1720347115>, with permutation test of significance; and (4) a set of training methods to locally train (static) word vectors from text corpora, including Word2Vec <doi:10.48550/arXiv.1301.3781>, GloVe <doi:10.3115/v1/D14-1162>, and FastText <doi:10.48550/arXiv.1607.04606>.

r-pivotaltrackr 0.2.0
Propagated dependencies: r-httr@1.4.7 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://enpiar.com/r/pivotaltrackR/
Licenses: Expat
Build system: r
Synopsis: Client for the 'Pivotal Tracker' API
Description:

Pivotal Tracker <https://www.pivotaltracker.com> is a project management software-as-a-service that provides a REST API. This package provides an R interface to that API, allowing you to query it and work with its responses.

r-portfolioanalytics 2.1.1
Propagated dependencies: r-zoo@1.8-14 r-xts@0.14.1 r-roi-plugin-symphony@1.0-0 r-pso@1.0.4 r-performanceanalytics@2.0.8 r-mco@1.17 r-gensa@1.1.15 r-foreach@1.5.2
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/braverock/PortfolioAnalytics
Licenses: GPL 3
Build system: r
Synopsis: Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios
Description:

Portfolio optimization and analysis routines and graphics.

r-pjfm 0.1.0
Propagated dependencies: r-survival@3.8-3 r-statmod@1.5.1 r-rcppensmallen@0.3.10.0.1 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-pracma@2.4.6 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PJFM
Licenses: GPL 2
Build system: r
Synopsis: Variational Inference for High-Dimensional Joint Frailty Model
Description:

Joint frailty models have been widely used to study the associations between recurrent events and a survival outcome. However, existing joint frailty models only consider one or a few recurrent events and cannot deal with high-dimensional recurrent events. This package can be used to fit our recently developed penalized joint frailty model that can handle high-dimensional recurrent events. Specifically, an adaptive lasso penalty is imposed on the parameters for the effects of the recurrent events on the survival outcome, which allows for variable selection. Also, our algorithm is computationally efficient, which is based on the Gaussian variational approximation method.

r-pjccalculator 0.1.3
Propagated dependencies: r-rlang@1.1.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PJCcalculator
Licenses: Expat
Build system: r
Synopsis: PROs-Joint Contrast (PJC) Calculator
Description:

Computes the Patient-Reported Outcomes (PROs) Joint Contrast (PJC), a residual-based summary that captures information left over after accounting for the clinical Disease Activity index for Psoriatic Arthritis (cDAPSA). PROs (pain and patient global assessment) and joint counts (swollen and tender) are standardized, then each component is adjusted for standardized cDAPSA using natural spline coefficients that were derived from previously published models. The resulting residuals are standardized and combined using fixed principal component loadings, to yield a continuous PJC score and quartile groupings. This package provides a calculator for applying those published coefficients to new datasets; it does not itself estimate spline models or principal components.

r-piper 0.6.1.3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://renkun.me/pipeR
Licenses: Expat
Build system: r
Synopsis: Multi-Paradigm Pipeline Implementation
Description:

This package provides various styles of function chaining methods: Pipe operator, Pipe object, and pipeline function, each representing a distinct pipeline model yet sharing almost a common set of features: A value can be piped to the first unnamed argument of a function and to dot symbol in an enclosed expression. The syntax is designed to make the pipeline more readable and friendly to a wide range of operations.

r-poth 0.3-0
Propagated dependencies: r-stringr@1.6.0 r-netmeta@3.3-1 r-mass@7.3-65 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/augustinewigle/poth
Licenses: GPL 2+
Build system: r
Synopsis: Precision of Treatment Hierarchy (POTH)
Description:

Calculate POTH for treatment hierarchies from frequentist and Bayesian network meta-analysis. POTH quantifies the certainty in a treatment hierarchy. Subset POTH, POTH residuals, and best k treatments POTH can also be calculated to improve interpretation of treatment hierarchies.

r-psqn 0.3.2
Propagated dependencies: r-testthat@3.3.0 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/boennecd/psqn
Licenses: FSDG-compatible
Build system: r
Synopsis: Partially Separable Quasi-Newton
Description:

This package provides quasi-Newton methods to minimize partially separable functions. The methods are largely described by Nocedal and Wright (2006) <doi:10.1007/978-0-387-40065-5>.

r-pflr 1.1.0
Propagated dependencies: r-psych@2.5.6 r-mass@7.3-65 r-glmnet@4.1-10 r-flare@1.7.0.2 r-fda@6.3.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PFLR
Licenses: GPL 2
Build system: r
Synopsis: Estimating Penalized Functional Linear Regression
Description:

Implementation of commonly used penalized functional linear regression models, including the Smooth and Locally Sparse (SLoS) method by Lin et al. (2016) <doi:10.1080/10618600.2016.1195273>, Nested Group bridge Regression (NGR) method by Guan et al. (2020) <doi:10.1080/10618600.2020.1713797>, Functional Linear Regression That's interpretable (FLIRTI) by James et al. (2009) <doi:10.1214/08-AOS641>, and the Penalized B-spline regression method.

r-prevr 5.0.0
Propagated dependencies: r-stars@0.6-8 r-sf@1.0-23 r-kernsmooth@2.23-26 r-gstat@2.1-4 r-ggplot2@4.0.1 r-foreign@0.8-90 r-fields@17.1 r-directlabels@2025.6.24
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/larmarange/prevR/
Licenses: CeCILL
Build system: r
Synopsis: Estimating Regional Trends of a Prevalence from a DHS and Similar Surveys
Description:

Spatial estimation of a prevalence surface or a relative risks surface, using data from a Demographic and Health Survey (DHS) or an analog survey, see Larmarange et al. (2011) <doi:10.4000/cybergeo.24606>.

r-pkgverse 0.0.1
Propagated dependencies: r-usethis@3.2.1 r-devtools@2.4.6
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://pkgverse.mikewk.com
Licenses: CC0
Build system: r
Synopsis: Build a Meta-Package Universe
Description:

Build your own universe of packages similar to the tidyverse package <https://tidyverse.org/> with this meta-package creator. Create a package-verse, or meta package, by supplying a custom name for the collection of packages and the vector of desired package names to includeâ and optionally supply a destination directory, an indicator of whether to keep the created package directory, and/or a vector of verbs implement via the usethis <http://usethis.r-lib.org/> package.

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