_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-paper 1.0-6
Propagated dependencies: r-xtable@1.8-4 r-gmodels@2.19.1 r-car@3.1-3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/hofnerb/papeR
Licenses: GPL 2
Build system: r
Synopsis: Toolbox for Writing Pretty Papers and Reports
Description:

This package provides a toolbox for writing knitr', Sweave or other LaTeX'- or markdown'-based reports and to prettify the output of various estimated models.

r-pipetime 0.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pipetime
Licenses: Expat
Build system: r
Synopsis: Tools to Time Pipe Operations
Description:

Enable users to measure and record the execution time of pipe operations (using |>) with optional logging to dataframes and output to the console.

r-pmparser 1.0.24
Dependencies: unzip@6.0 sqlite@3.39.3
Propagated dependencies: r-xml2@1.5.0 r-withr@3.0.2 r-rcurl@1.98-1.17 r-r-utils@2.13.0 r-jsonlite@2.0.0 r-iterators@1.0.14 r-glue@1.8.0 r-foreach@1.5.2 r-dbi@1.2.3 r-data-table@1.17.8 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://pmparser.hugheylab.org
Licenses: GPL 2
Build system: r
Synopsis: Create and Maintain a Relational Database of Data from PubMed/MEDLINE
Description:

This package provides a simple interface for extracting various elements from the publicly available PubMed XML files, incorporating PubMed's regular updates, and combining the data with the NIH Open Citation Collection. See Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.

r-pubh 3.0.0
Propagated dependencies: r-tidyselect@1.2.1 r-tibble@3.3.0 r-survival@3.8-3 r-sjmisc@2.8.11 r-sjlabelled@1.2.0 r-sandwich@3.1-1 r-performance@0.15.2 r-lmtest@0.9-40 r-jtools@2.3.1 r-huxtable@5.8.0 r-gtsummary@2.5.0 r-ggplot2@4.0.1 r-epitools@0.5-10.1 r-epi@2.61 r-emmeans@2.0.0 r-dplyr@1.1.4 r-car@3.1-3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pubh
Licenses: GPL 2
Build system: r
Synopsis: Toolbox for Public Health and Epidemiology
Description:

This package provides a toolbox for making R functions and capabilities more accessible to students and professionals from Epidemiology and Public Health related disciplines. Includes a function to report coefficients and confidence intervals from models using robust standard errors (when available), functions that expand ggplot2 plots and functions relevant for introductory papers in Epidemiology or Public Health. Please note that use of the provided data sets is for educational purposes only.

r-poumm 2.1.8
Propagated dependencies: r-rcpp@1.1.0 r-lamw@2.2.5 r-ggplot2@4.0.1 r-foreach@1.5.2 r-data-table@1.17.8 r-coda@0.19-4.1 r-ape@5.8-1 r-adaptmcmc@1.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://venelin.github.io/POUMM/index.html
Licenses: GPL 3+
Build system: r
Synopsis: The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Description:

The Phylogenetic Ornstein-Uhlenbeck Mixed Model (POUMM) allows to estimate the phylogenetic heritability of continuous traits, to test hypotheses of neutral evolution versus stabilizing selection, to quantify the strength of stabilizing selection, to estimate measurement error and to make predictions about the evolution of a phenotype and phenotypic variation in a population. The package implements combined maximum likelihood and Bayesian inference of the univariate Phylogenetic Ornstein-Uhlenbeck Mixed Model, fast parallel likelihood calculation, maximum likelihood inference of the genotypic values at the tips, functions for summarizing and plotting traces and posterior samples, functions for simulation of a univariate continuous trait evolution model along a phylogenetic tree. So far, the package has been used for estimating the heritability of quantitative traits in macroevolutionary and epidemiological studies, see e.g. Bertels et al. (2017) <doi:10.1093/molbev/msx246> and Mitov and Stadler (2018) <doi:10.1093/molbev/msx328>. The algorithm for parallel POUMM likelihood calculation has been published in Mitov and Stadler (2019) <doi:10.1111/2041-210X.13136>.

r-phylotate 1.3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=phylotate
Licenses: Expat
Build system: r
Synopsis: Phylogenies with Annotations
Description:

This package provides functions to read and write APE-compatible phylogenetic trees in NEXUS and Newick formats, while preserving annotations.

r-pinyin 1.1.6
Propagated dependencies: r-splitstackshape@1.4.8 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/pzhaonet/pinyin
Licenses: Expat
Build system: r
Synopsis: Convert Chinese Characters into Pinyin, Sijiao, Wubi or Other Codes
Description:

Convert Chinese characters into Pinyin (the official romanization system for Standard Chinese in mainland China, Malaysia, Singapore, and Taiwan. See <https://en.wikipedia.org/wiki/Pinyin> for details), Sijiao (four or five numerical digits per character. See <https://en.wikipedia.org/wiki/Four-Corner_Method>.), Wubi (an input method with five strokes. See <https://en.wikipedia.org/wiki/Wubi_method>) or user-defined codes.

r-prinsurf 1.0
Propagated dependencies: r-rgl@1.3.31
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=prinsurf
Licenses: Expat
Build system: r
Synopsis: Constructs Principal Surfaces
Description:

Construct a principal surface that are two-dimensional surfaces that pass through the middle of a p-dimensional data set. They minimise the distance from the data points, and provide a nonlinear summary of data. The surfaces are nonparametric and their shape is suggested by the data. The formation of a surface is found using an iterative procedure which starts with a linear summary, typically with a principal component plane. Each successive iteration is a local average of the p-dimensional points, where an average is based on a projection of a point onto the nonlinear surface of the previous iteration. For more information on principal surfaces, see Ganey, R. (2019, "https://open.uct.ac.za/items/4e655d7d-d10c-481b-9ccc-801903aebfc8").

r-psrwe 3.2
Propagated dependencies: r-survival@3.8-3 r-stanheaders@2.32.10 r-rstantools@2.5.0 r-rstan@2.32.7 r-rcppparallel@5.1.11-1 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-randomforest@4.7-1.2 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-cowplot@1.2.0 r-bh@1.87.0-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/olssol/psrwe
Licenses: GPL 3+
Build system: r
Synopsis: PS-Integrated Methods for Incorporating Real-World Evidence in Clinical Studies
Description:

High-quality real-world data can be transformed into scientific real-world evidence for regulatory and healthcare decision-making using proven analytical methods and techniques. For example, propensity score (PS) methodology can be applied to select a subset of real-world data containing patients that are similar to those in the current clinical study in terms of baseline covariates, and to stratify the selected patients together with those in the current study into more homogeneous strata. Then, statistical methods such as the power prior approach or composite likelihood approach can be applied in each stratum to draw inference for the parameters of interest. This package provides functions that implement the PS-integrated real-world evidence analysis methods such as Wang et al. (2019) <doi:10.1080/10543406.2019.1657133>, Wang et al. (2020) <doi:10.1080/10543406.2019.1684309>, and Chen et al. (2020) <doi:10.1080/10543406.2020.1730877>.

r-psychomix 1.1-9
Propagated dependencies: r-psychotools@0.7-5 r-modeltools@0.2-24 r-lattice@0.22-7 r-formula@1.2-5 r-flexmix@2.3-20
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=psychomix
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Psychometric Mixture Models
Description:

Psychometric mixture models based on flexmix infrastructure. At the moment Rasch mixture models with different parameterizations of the score distribution (saturated vs. mean/variance specification), Bradley-Terry mixture models, and MPT mixture models are implemented. These mixture models can be estimated with or without concomitant variables. See Frick et al. (2012) <doi:10.18637/jss.v048.i07> and Frick et al. (2015) <doi:10.1177/0013164414536183> for details on the Rasch mixture models.

r-pluscode 0.1.0
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pluscode
Licenses: GPL 2
Build system: r
Synopsis: Encoder for Google 'Pluscodes'
Description:

Retrieves a pluscode by inputting latitude and longitude. Includes additional functions to retrieve neighbouring pluscodes'.

r-pcsstools 0.1.2
Propagated dependencies: r-rdpack@2.6.4 r-gtools@3.9.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/jackmwolf/pcsstools/
Licenses: GPL 3+
Build system: r
Synopsis: Tools for Regression Using Pre-Computed Summary Statistics
Description:

Defines functions to describe regression models using only pre-computed summary statistics (i.e. means, variances, and covariances) in place of individual participant data. Possible models include linear models for linear combinations, products, and logical combinations of phenotypes. Implements methods presented in Wolf et al. (2021) <doi:10.3389/fgene.2021.745901> Wolf et al. (2020) <doi:10.1142/9789811215636_0063> and Gasdaska et al. (2019) <doi:10.1142/9789813279827_0036>.

r-popdesign 1.1.0
Propagated dependencies: r-magick@2.9.0 r-knitr@1.50 r-iso@0.0-21
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PoPdesign
Licenses: GPL 2
Build system: r
Synopsis: Posterior Predictive (PoP) Design for Phase I Clinical Trials
Description:

The primary goal of phase I clinical trials is to find the maximum tolerated dose (MTD). To reach this objective, we introduce a new design for phase I clinical trials, the posterior predictive (PoP) design. The PoP design is an innovative model-assisted design that is as simply as the conventional algorithmic designs as its decision rules can be pre-tabulated prior to the onset of trial, but is of more flexibility of selecting diverse target toxicity rates and cohort sizes. The PoP design has desirable properties, such as coherence and consistency. Moreover, the PoP design provides better empirical performance than the BOIN and Keyboard design with respect to high average probabilities of choosing the MTD and slightly lower risk of treating patients at subtherapeutic or overly toxic doses.

r-ph1xbar 0.11.3
Propagated dependencies: r-vgam@1.1-13 r-pracma@2.4.6 r-mvtnorm@1.3-3 r-forecast@8.24.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/bolus123/PH1XBAR
Licenses: GPL 3
Build system: r
Synopsis: Phase I Shewhart X-Bar Chart
Description:

The purpose of PH1XBAR is to build a Phase I Shewhart control chart for the basic Shewhart, the variance components and the ARMA models in R for subgrouped and individual data. More details can be found: Yao and Chakraborti (2020) <doi: 10.1002/qre.2793>, Yao and Chakraborti (2021) <doi: 10.1080/08982112.2021.1878220>, and Yao et al. (2023) <doi: 10.1080/00224065.2022.2139783>.

r-parabar 1.4.2
Propagated dependencies: r-r6@2.6.1 r-progress@1.2.3 r-filelock@1.0.3 r-callr@3.7.6
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://parabar.mihaiconstantin.com
Licenses: Expat
Build system: r
Synopsis: Progress Bar for Parallel Tasks
Description:

This package provides a simple interface in the form of R6 classes for executing tasks in parallel, tracking their progress, and displaying accurate progress bars.

r-preprocessrecordlinkage 1.0.1
Propagated dependencies: r-tm@0.7-16 r-syn@0.1.0 r-stringr@1.6.0 r-recordlinkage@0.4-12.6 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PreProcessRecordLinkage
Licenses: GPL 3
Build system: r
Synopsis: Preprocessing Record Linkage
Description:

In this record linkage package, data preprocessing has been meticulously executed to cover a wide range of datasets, ensuring that variable names are standardized using synonyms. This approach facilitates seamless data integration and analysis across various datasets. While users have the flexibility to modify variable names, the system intelligently ensures that changes are only permitted when they do not compromise data consistency or essential variable essence.

r-polminer 0.8.9
Propagated dependencies: r-xml2@1.5.0 r-tm@0.7-16 r-stringi@1.8.7 r-slam@0.1-55 r-rlang@1.1.6 r-rcppcwb@0.6.10 r-pbapply@1.7-4 r-matrix@1.7-4 r-magrittr@2.0.4 r-lifecycle@1.0.4 r-knitr@1.50 r-jsonlite@2.0.0 r-fs@1.6.6 r-dt@0.34.0 r-data-table@1.17.8 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/PolMine/polmineR
Licenses: GPL 3
Build system: r
Synopsis: Verbs and Nouns for Corpus Analysis
Description:

Package for corpus analysis using the Corpus Workbench ('CWB', <https://cwb.sourceforge.io>) as an efficient back end for indexing and querying large corpora. The package offers functionality to flexibly create subcorpora and to carry out basic statistical operations (count, co-occurrences etc.). The original full text of documents can be reconstructed and inspected at any time. Beyond that, the package is intended to serve as an interface to packages implementing advanced statistical procedures. Respective data structures (document-term matrices, term-co-occurrence matrices etc.) can be created based on the indexed corpora.

r-permimp 1.1-0
Propagated dependencies: r-survival@3.8-3 r-randomforest@4.7-1.2 r-pbapply@1.7-4 r-party@1.3-18 r-ipred@0.9-15
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://ddebeer.github.io/permimp/
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Conditional Permutation Importance
Description:

An add-on to the party package, with a faster implementation of the partial-conditional permutation importance for random forests. The standard permutation importance is implemented exactly the same as in the party package. The conditional permutation importance can be computed faster, with an option to be backward compatible to the party implementation. The package is compatible with random forests fit using the party and the randomForest package. The methods are described in Strobl et al. (2007) <doi:10.1186/1471-2105-8-25> and Debeer and Strobl (2020) <doi:10.1186/s12859-020-03622-2>.

r-plsvarsel 0.9.13
Propagated dependencies: r-progress@1.2.3 r-praznik@12.0.0 r-pls@2.8-5 r-mvtnorm@1.3-3 r-mass@7.3-65 r-genalg@0.2.1 r-bdsmatrix@1.3-7
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/khliland/plsVarSel/
Licenses: GPL 2+
Build system: r
Synopsis: Variable Selection in Partial Least Squares
Description:

Interfaces and methods for variable selection in Partial Least Squares. The methods include filter methods, wrapper methods and embedded methods. Both regression and classification is supported.

r-packagefinder 0.3.5
Propagated dependencies: r-tidyr@1.3.1 r-textutils@0.4-3 r-stringr@1.6.0 r-shinyjs@2.1.0 r-shinybusy@0.3.3 r-shiny@1.11.1 r-reactable@0.4.5 r-pander@0.6.6 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-htmltable@2.4.3 r-formattable@0.2.1 r-crayon@1.5.3 r-clipr@0.8.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/jsugarelli/packagefinder/
Licenses: GPL 3
Build system: r
Synopsis: Comfortable Search for R Packages on CRAN, Either Directly from the R Console or with an R Studio Add-in
Description:

Search for R packages on CRAN directly from the R console, based on the packages titles, short and long descriptions, or other fields. Combine multiple keywords with logical operators ('and', or'), view detailed information on any package and keep track of the latest package contributions to CRAN. If you don't want to search from the R console, use the comfortable R Studio add-in.

r-projecttemplate 0.11.1
Propagated dependencies: r-tibble@3.3.0 r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: http://projecttemplate.net
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Automates the Creation of New Statistical Analysis Projects
Description:

This package provides functions to automatically build a directory structure for a new R project. Using this structure, ProjectTemplate automates data loading, preprocessing, library importing and unit testing.

r-pk-unit-trans 0.1.0
Propagated dependencies: r-stringi@1.8.7 r-maditr@0.8.7
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pk.unit.trans
Licenses: Expat
Build system: r
Synopsis: Achieve Numerical Conversion Between Units Commonly Used in Pharmacokinetics
Description:

Achieve internal conversions of mass units, molar units, and volume units commonly used in pharmacokinetics, as well as conversions between mass units and molar units.

r-pcobw 0.0.1
Propagated dependencies: r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PCObw
Licenses: GPL 2+
Build system: r
Synopsis: Bandwidth Selector with Penalized Comparison to Overfitting Criterion
Description:

Bandwidth selector according to the Penalised Comparison to Overfitting (P.C.O.) criterion as described in Varet, S., Lacour, C., Massart, P., Rivoirard, V., (2019) <https://hal.archives-ouvertes.fr/hal-02002275>. It can be used with univariate and multivariate data.

r-pdqr 0.3.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/echasnovski/pdqr
Licenses: Expat
Build system: r
Synopsis: Work with Custom Distribution Functions
Description:

Create, transform, and summarize custom random variables with distribution functions (analogues of p*()', d*()', q*()', and r*() functions from base R). Two types of distributions are supported: "discrete" (random variable has finite number of output values) and "continuous" (infinite number of values in the form of continuous random variable). Functions for distribution transformations and summaries are available. Implemented approaches often emphasize approximate and numerical solutions: all distributions assume finite support and finite values of density function; some methods implemented with simulation techniques.

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