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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-practicalequidesign 0.0.3
Propagated dependencies: r-tidyr@1.3.1 r-temporal@0.3.0.2 r-numderiv@2016.8-1.1 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PracticalEquiDesign
Licenses: GPL 3
Build system: r
Synopsis: Design of Practical Equivalence Trials
Description:

Sample size calculations for practical equivalence trial design with a time to event endpoint.

r-pomaspu 1.0.0
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-matrixstats@1.5.0 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=POMaSPU
Licenses: GPL 3+
Build system: r
Synopsis: Adaptive Association Tests for Multiple Phenotypes using Proportional Odds Model (POM-aSPU)
Description:

POM-aSPU test evaluates an association between an ordinal response and multiple phenotypes, for details see Kim and Pan (2017) <DOI:10.1002/gepi.22033>.

r-peermodels 0.10.3
Propagated dependencies: r-stringr@1.6.0 r-jsonlite@2.0.0 r-httr2@1.2.1 r-httr@1.4.7 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://www.peermodelsnetwork.com
Licenses: GPL 3
Build system: r
Synopsis: Client-Side R API Wrapper for Peer Models Network Model Repository
Description:

Enables direct cloud access to health care decision models hosted on the PRISM server of the Peer Models Network.

r-pijavski 1.0.5
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=Pijavski
Licenses: LGPL 3
Build system: r
Synopsis: Global Univariate Minimization
Description:

Global univariate minimization of Lipschitz functions is performed by using Pijavski method, which was published in Pijavski (1972) <DOI:10.1016/0041-5553(72)90115-2>.

r-pluscode2 0.1.0
Propagated dependencies: r-sf@1.0-23
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/Armando-d/plusCode2
Licenses: Expat
Build system: r
Synopsis: Coordinates to 'Plus Code' Conversion Tool
Description:

Generates Plus Code of geometric objects or data frames that contain them, giving the possibility to specify the precision of the area. The main feature of the package comes from the open-source code developed by Google Inc. present in the repository <https://github.com/google/open-location-code/blob/main/java/src/main/java/com/google/openlocationcode/OpenLocationCode.java>. For details about Plus Code', visit <https://maps.google.com/pluscodes/> or <https://github.com/google/open-location-code>.

r-pkgndep 1.99.3
Propagated dependencies: r-hash@2.2.6.3 r-globaloptions@0.1.2 r-getoptlong@1.0.5 r-complexheatmap@2.26.0 r-brew@1.0-10 r-biocversion@3.22.0 r-biocmanager@1.30.27
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/jokergoo/pkgndep
Licenses: Expat
Build system: r
Synopsis: Analyze Dependency Heaviness of R Packages
Description:

This package provides a new metric named dependency heaviness is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents. The dependency heaviness analysis is visualized by a customized heatmap. The package is described in <doi:10.1093/bioinformatics/btac449>. We have also performed the dependency heaviness analysis on the CRAN/Bioconductor package ecosystem and the results are implemented as a web-based database which provides comprehensive tools for querying dependencies of individual R packages. The systematic analysis on the CRAN/Bioconductor ecosystem is described in <doi:10.1016/j.jss.2023.111610>. From pkgndep version 2.0.0, the heaviness database includes snapshots of the CRAN/Bioconductor ecosystems for many old R versions.

r-phasetyper 1.0.4
Propagated dependencies: r-igraph@2.2.1 r-expm@1.0-0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://rivasiker.github.io/PhaseTypeR/
Licenses: GPL 3
Build system: r
Synopsis: General-Purpose Phase-Type Functions
Description:

General implementation of core function from phase-type theory. PhaseTypeR can be used to model continuous and discrete phase-type distributions, both univariate and multivariate. The package includes functions for outputting the mean and (co)variance of phase-type distributions; their density, probability and quantile functions; functions for random draws; functions for reward-transformation; and functions for plotting the distributions as networks. For more information on these functions please refer to Bladt and Nielsen (2017, ISBN: 978-1-4939-8377-3) and Campillo Navarro (2019) <https://orbit.dtu.dk/en/publications/order-statistics-and-multivariate-discrete-phase-type-distributio>.

r-professr 2.4-3
Propagated dependencies: r-rpmg@2.2-7
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=ProfessR
Licenses: GPL 2+
Build system: r
Synopsis: Grades Setting and Exam Maker
Description:

Programs to determine student grades and create examinations from Question banks. Programs will create numerous multiple choice exams, randomly shuffled, for different versions of same question list.

r-ppcc 1.3
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=ppcc
Licenses: GPL 3
Build system: r
Synopsis: Probability Plot Correlation Coefficient Test
Description:

Calculates the Probability Plot Correlation Coefficient (PPCC) between a continuous variable X and a specified distribution. The corresponding composite hypothesis test that was first introduced by Filliben (1975) <doi: 10.1080/00401706.1975.10489279> can be performed to test whether the sample X is element of either the Normal, log-Normal, Exponential, Uniform, Cauchy, Logistic, Generalized Logistic, Gumbel (GEVI), Weibull, Generalized Extreme Value, Pearson III (Gamma 2), Mielke's Kappa, Rayleigh or Generalized Logistic Distribution. The PPCC test is performed with a fast Monte-Carlo simulation.

r-plotprjnetworks 1.0.0
Propagated dependencies: r-reshape2@1.4.5 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PlotPrjNetworks
Licenses: GPL 3
Build system: r
Synopsis: Useful Networking Tools for Project Management
Description:

Useful set of tools for plotting network diagrams in any kind of project.

r-ph2bye 0.1.4
Propagated dependencies: r-vgam@1.1-13 r-rcpp@1.1.0 r-nleqslv@3.3.5 r-animation@2.8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://allen.shinyapps.io/BayesDesign/
Licenses: GPL 2+
Build system: r
Synopsis: Phase II Clinical Trial Design Using Bayesian Methods
Description:

Calculate the Bayesian posterior/predictive probability and determine the sample size and stopping boundaries for single-arm Phase II design.

r-perplexr 0.0.3
Propagated dependencies: r-shiny@1.11.1 r-rstudioapi@0.17.1 r-miniui@0.1.2 r-jsonlite@2.0.0 r-httr@1.4.7 r-clipr@0.8.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/GabrielKaiserQFin/perplexR
Licenses: GPL 3+
Build system: r
Synopsis: Coding Assistant using Perplexity's Large Language Models
Description:

This package provides a coding assistant using Perplexity's Large Language Models <https://www.perplexity.ai/> API. A set of functions and RStudio add-ins that aim to help R developers.

r-pssmooth 1.0.3
Propagated dependencies: r-osdesign@1.8 r-np@0.60-18 r-mass@7.3-65 r-chngpt@2024.11-15
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/mjuraska/pssmooth
Licenses: GPL 2
Build system: r
Synopsis: Flexible and Efficient Evaluation of Principal Surrogates/Treatment Effect Modifiers
Description:

This package implements estimation and testing procedures for evaluating an intermediate biomarker response as a principal surrogate of a clinical response to treatment (i.e., principal stratification effect modification analysis), as described in Juraska M, Huang Y, and Gilbert PB (2020), Inference on treatment effect modification by biomarker response in a three-phase sampling design, Biostatistics, 21(3): 545-560 <doi:10.1093/biostatistics/kxy074>. The methods avoid the restrictive placebo structural risk modeling assumption common to past methods and further improve robustness by the use of nonparametric kernel smoothing for biomarker density estimation. A randomized controlled two-group clinical efficacy trial is assumed with an ordered categorical or continuous univariate biomarker response measured at a fixed timepoint post-randomization and with a univariate baseline surrogate measure allowed to be observed in only a subset of trial participants with an observed biomarker response (see the flexible three-phase sampling design in the paper for details). Bootstrap-based procedures are available for pointwise and simultaneous confidence intervals and testing of four relevant hypotheses. Summary and plotting functions are provided for estimation results.

r-patientprofiles 1.5.0
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-omopgenerics@1.3.7 r-lifecycle@1.0.4 r-dplyr@1.1.4 r-clock@0.7.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://darwin-eu.github.io/PatientProfiles/
Licenses: FSDG-compatible
Build system: r
Synopsis: Identify Characteristics of Patients in the OMOP Common Data Model
Description:

Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.

r-ppwdeming 2.0.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=ppwdeming
Licenses: GPL 3+
Build system: r
Synopsis: Precision Profile Weighted Deming Regression
Description:

Weighted Deming regression, also known as errors-in-variable regression, is applied with suitable weights. Weights are modeled via a precision profile; thus the methods implemented here are referred to as precision profile weighted Deming (PWD) regression. The package covers two settings รข one where the precision profiles are known either from external studies or from adequate replication of the X and Y readings, and one in which there is a plausible functional form for the precision profiles but the exact (unknown) function must be estimated from the (generally singlicate) readings. The function set includes tools for: estimated standard errors (via jackknifing); standardized-residual analysis function with regression diagnostic tools for normality, linearity and constant variance; and an outlier analysis identifying significant outliers for closer investigation. The following reference provides further information on mathematical derivations and applications. Hawkins, D.M., and J.J. Kraker. Precision Profile Weighted Deming Regression for Methods Comparison', (in press) <doi:10.1093/jalm/jfaf183>.

r-poisnor 1.3.3
Propagated dependencies: r-mvtnorm@1.3-3 r-matrix@1.7-4 r-corpcor@1.6.10
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PoisNor
Licenses: GPL 2
Build system: r
Synopsis: Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals
Description:

Generates multivariate data with count and continuous variables with a pre-specified correlation matrix. The count and continuous variables are assumed to have Poisson and normal marginals, respectively. The data generation mechanism is a combination of the normal to anything principle and a connection between Poisson and normal correlations in the mixture. The details of the method are explained in Yahav et al. (2012) <DOI:10.1002/asmb.901>.

r-piecemaker 1.0.2
Propagated dependencies: r-stringr@1.6.0 r-stringi@1.8.7 r-rlang@1.1.6 r-glue@1.8.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/macmillancontentscience/piecemaker
Licenses: FSDG-compatible
Build system: r
Synopsis: Tools for Preparing Text for Tokenizers
Description:

Tokenizers break text into pieces that are more usable by machine learning models. Many tokenizers share some preparation steps. This package provides those shared steps, along with a simple tokenizer.

r-phyr 1.1.3
Propagated dependencies: r-tidyr@1.3.1 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-nloptr@2.2.1 r-mvtnorm@1.3-3 r-matrix@1.7-4 r-lme4@1.1-37 r-latticeextra@0.6-31 r-gridextra@2.3 r-dplyr@1.1.4 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://daijiang.github.io/phyr/
Licenses: GPL 3
Build system: r
Synopsis: Model Based Phylogenetic Analysis
Description:

This package provides a collection of functions to do model-based phylogenetic analysis. It includes functions to calculate community phylogenetic diversity, to estimate correlations among functional traits while accounting for phylogenetic relationships, and to fit phylogenetic generalized linear mixed models. The Bayesian phylogenetic generalized linear mixed models are fitted with the INLA package (<https://www.r-inla.org>).

r-photogea 1.4.0
Propagated dependencies: r-openxlsx@4.2.8.1 r-lattice@0.22-7 r-dfoptim@2023.1.0 r-deoptim@2.2-8
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/eloch216/PhotoGEA
Licenses: Expat
Build system: r
Synopsis: Photosynthetic Gas Exchange Analysis
Description:

Read, process, fit, and analyze photosynthetic gas exchange measurements. Documentation is provided by several vignettes; also see Lochocki, Salesse-Smith, & McGrath (2025) <doi:10.1111/pce.15501>.

r-pancanvarsel 0.0.3
Propagated dependencies: r-smoothmest@0.1-3 r-mvtnorm@1.3-3 r-msm@1.8.2 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PanCanVarSel
Licenses: GPL 3
Build system: r
Synopsis: Pan-Cancer Variable Selection
Description:

This package provides function for performing Bayesian survival regression using Horseshoe prior in the accelerated failure time model with log normal assumption in order to achieve high dimensional pan-cancer variable selection as developed in Maity et. al. (2019) <doi:10.1111/biom.13132>.

r-pbs 1.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pbs
Licenses: GPL 2
Build system: r
Synopsis: Periodic B Splines
Description:

Periodic B Splines Basis.

r-probitspatial 1.1
Propagated dependencies: r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-rann@2.6.2 r-numderiv@2016.8-1.1 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=ProbitSpatial
Licenses: GPL 2+
Build system: r
Synopsis: Probit with Spatial Dependence, SAR, SEM and SARAR Models
Description:

Fast estimation of binomial spatial probit regression models with spatial autocorrelation for big datasets.

r-pathwayspace 1.1.1
Propagated dependencies: r-scales@1.4.0 r-rgraphspace@1.1.1 r-rann@2.6.2 r-lifecycle@1.0.4 r-igraph@2.2.1 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://sysbiolab.github.io/PathwaySpace/
Licenses: Artistic License 2.0
Build system: r
Synopsis: Spatial Projection of Network Signals along Geodesic Paths
Description:

For a given graph containing vertices, edges, and a signal associated with the vertices, the PathwaySpace package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. PathwaySpace could have various applications, such as visualizing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the PathwaySpace package provides a novel way of representing graph data.

r-pater 1.0.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/JulioCollazos64/pater
Licenses: Expat
Build system: r
Synopsis: Turn a URL Pathname into a Regular Expression
Description:

R's implementation of the JavaScript library path-to-regexp', it aims to provide R web frameworks features such as parameter handling among other URL path utilities.

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