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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-rgn 1.0.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/ClimateAnalytics/RGN/
Licenses: Expat
Build system: r
Synopsis: Robust-Gauss Newton (RGN) Optimization of Sum-of-Squares Objective Function
Description:

Implementation of the Robust Gauss-Newton (RGN) algorithm, designed for solving optimization problems with a sum of least squares objective function. For algorithm details please refer to Qin et. al. (2018) <doi:10.1029/2017WR022488>.

r-rangebuilder 2.2
Propagated dependencies: r-units@1.0-0 r-terra@1.8-86 r-stringi@1.8.7 r-sf@1.0-23 r-rnaturalearth@1.1.0 r-rcpp@1.1.0 r-pbapply@1.7-4 r-alphahull@2.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/ptitle/rangeBuilder
Licenses: GPL 3+
Build system: r
Synopsis: Occurrence Filtering, Geographic Standardization and Generation of Species Range Polygons
Description:

This package provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species distributions.

r-regional 0.4.4
Propagated dependencies: r-terra@1.8-86 r-philentropy@0.10.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://jakubnowosad.com/regional/
Licenses: Expat
Build system: r
Synopsis: Intra- and Inter-Regional Similarity
Description:

Calculates intra-regional and inter-regional similarities based on user-provided spatial vector objects (regions) and spatial raster objects (cells with values). Implemented metrics include inhomogeneity, isolation (Haralick and Shapiro (1985) <doi:10.1016/S0734-189X(85)90153-7>, Jasiewicz et al. (2018) <doi:10.1016/j.cageo.2018.06.003>), and distinction (Nowosad (2021) <doi:10.1080/13658816.2021.1893324>).

r-rccpca 0.1.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RCCPCA
Licenses: GPL 2
Build system: r
Synopsis: "Retained Component Criterion for Principal Component Analysis"
Description:

The RCC_PCA criterion is a tool to determine the optimal number of components to retain in PCA;See Alshammri (2021).

r-rdbnomics 0.6.4
Propagated dependencies: r-jsonlite@2.0.0 r-data-table@1.17.8 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://git.nomics.world/dbnomics/rdbnomics
Licenses: AGPL 3
Build system: r
Synopsis: Download DBnomics Data
Description:

R access to hundreds of millions data series from DBnomics API (<https://db.nomics.world/>).

r-respirometry 2.0.2
Propagated dependencies: r-segmented@2.1-4 r-seacarb@3.3.3 r-rlang@1.1.6 r-plyr@1.8.9 r-minpack-lm@1.2-4 r-measurements@1.5.1 r-marelac@2.1.11 r-lubridate@1.9.4 r-dplyr@1.1.4 r-birk@2.1.2
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=respirometry
Licenses: GPL 3
Build system: r
Synopsis: Tools for Conducting and Analyzing Respirometry Experiments
Description:

This package provides tools to enable the researcher to more precisely conduct respirometry experiments. Strong emphasis is on aquatic respirometry. Tools focus on helping the researcher setup and conduct experiments. Functions for analysis of resulting respirometry data are also provided. This package provides tools for intermittent, flow-through, and closed respirometry techniques.

r-roxyglobals 1.0.0
Propagated dependencies: r-roxygen2@7.3.3 r-desc@1.4.3 r-codetools@0.2-20 r-brio@1.1.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/anthonynorth/roxyglobals
Licenses: Expat
Build system: r
Synopsis: 'Roxygen2' Global Variable Declarations
Description:

Generate utils::globalVariables() from roxygen2 @global and @autoglobal tags.

r-rppanalyzer 1.4.9
Propagated dependencies: r-quantreg@6.1 r-limma@3.66.0 r-lattice@0.22-7 r-hmisc@5.2-4 r-gplots@3.2.0 r-ggplot2@4.0.1 r-gam@1.22-6 r-biobase@2.70.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RPPanalyzer
Licenses: LGPL 2.0+
Build system: r
Synopsis: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data
Description:

Reads in sample description and slide description files and annotates the expression values taken from GenePix results files (text file format used by many microarray scanner and software providers). After normalization data can be visualized as boxplot, heatmap or dotplot.

r-roi-plugin-msbinlp 1.0-1
Propagated dependencies: r-slam@0.1-55 r-roi@1.0-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://roigrp.gitlab.io
Licenses: GPL 3
Build system: r
Synopsis: 'Multi-Solution' Binary Linear Problem Plug-in for the 'R' Optimization Interface
Description:

Enhances the R Optimization Infrastructure ('ROI') package with the possibility to obtain multiple solutions for linear problems with binary variables. The main function is copied (with small modifications) from the relations package.

r-readepi 1.0.4
Propagated dependencies: r-tidyr@1.3.1 r-rsqlite@2.4.4 r-rmysql@0.11.1 r-purrr@1.2.0 r-pool@1.0.4 r-odbc@1.6.4.1 r-httr2@1.2.1 r-dplyr@1.1.4 r-dbi@1.2.3 r-cli@3.6.5 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://epiverse-trace.github.io/readepi/
Licenses: Expat
Build system: r
Synopsis: Read Data from Relational Database Management Systems and Health Information Systems
Description:

Import Data from Relational Database Management Systems (RDBMS) and Health Information Systems ('HIS'). The current version of the package supports importing data from RDBMS including MS SQL', MySQL', PostGRESQL', and SQLite', as well as from two HIS platforms: DHIS2 and SORMAS'.

r-rgee 1.1.8
Propagated dependencies: r-rstudioapi@0.17.1 r-reticulate@1.44.1 r-r6@2.6.1 r-processx@3.8.6 r-magrittr@2.0.4 r-leaflet@2.2.3 r-leafem@0.2.5 r-jsonlite@2.0.0 r-crayon@1.5.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/r-spatial/rgee/
Licenses: ASL 2.0
Build system: r
Synopsis: R Bindings for Calling the 'Earth Engine' API
Description:

Earth Engine <https://earthengine.google.com/> client library for R. All of the Earth Engine API classes, modules, and functions are made available. Additional functions implemented include importing (exporting) of Earth Engine spatial objects, extraction of time series, interactive map display, assets management interface, and metadata display. See <https://r-spatial.github.io/rgee/> for further details.

r-rtls 0.2.6.1
Propagated dependencies: r-sf@1.0-23 r-rgl@1.3.31 r-rcppprogress@0.4.2 r-rcpphnsw@0.6.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-foreach@1.5.2 r-dosnow@1.0.20 r-data-table@1.17.8 r-boot@1.3-32 r-alphashape3d@1.3.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/Antguz/rTLS
Licenses: GPL 3+
Build system: r
Synopsis: Tools to Process Point Clouds Derived from Terrestrial Laser Scanning
Description:

This package provides a set of tools to process and calculate metrics on point clouds derived from terrestrial LiDAR (Light Detection and Ranging; TLS). Its creation is based on key aspects of the TLS application in forestry and ecology. Currently, the main routines are based on filtering, neighboring features of points, voxelization, canopy structure, and the creation of artificial stands. It is written using data.table and C++ language and in most of the functions it is possible to use parallel processing to speed-up the routines.

r-r3port 0.3.1
Propagated dependencies: r-whisker@0.4.1 r-tinytex@0.58 r-reshape2@1.4.5 r-plyr@1.8.9
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/RichardHooijmaijers/R3port
Licenses: GPL 2+
Build system: r
Synopsis: Report Functions to Create HTML and PDF Files
Description:

Create and combine HTML and PDF reports from within R. Possibility to design tables and listings for reporting and also include R plots.

r-rmcfs 1.3.6
Dependencies: openjdk@25
Propagated dependencies: r-yaml@2.3.10 r-stringi@1.8.7 r-rjava@1.0-11 r-reshape2@1.4.5 r-igraph@2.2.1 r-gridextra@2.3 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://home.ipipan.waw.pl/m.draminski/mcfs.html
Licenses: GPL 3
Build system: r
Synopsis: The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery
Description:

MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, small n large p transactional and biological data. M. Draminski, J. Koronacki (2018) <doi:10.18637/jss.v085.i12>.

r-rasterdiv 0.3.8
Propagated dependencies: r-viridis@0.6.5 r-twdtw@1.0-1 r-terra@1.8-86 r-proxy@0.4-27 r-progress@1.2.3 r-ggplot2@4.0.1 r-ggforce@0.5.0 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://mattmar.github.io/rasterdiv/
Licenses: GPL 2+
Build system: r
Synopsis: Diversity Indices for Numerical Matrices
Description:

This package provides methods for calculating diversity indices on numerical matrices, based on information theory, following Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039> and Rocchini et al. (2021) <doi:10.1101/2021.01.23.427872>.

r-readstata13 0.11.0
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/sjewo/readstata13
Licenses: GPL 2 FSDG-compatible
Build system: r
Synopsis: Import 'Stata' Data Files
Description:

Function to read and write the Stata file format.

r-rstackdeque 1.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/oneilsh/rstackdeque
Licenses: Expat
Build system: r
Synopsis: Persistent Fast Amortized Stack and Queue Data Structures
Description:

This package provides fast, persistent (side-effect-free) stack, queue and deque (double-ended-queue) data structures. While deques include a superset of functionality provided by queues, in these implementations queues are more efficient in some specialized situations. See the documentation for rstack, rdeque, and rpqueue for details.

r-rmerec 0.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/lucassp/rmerec
Licenses: GPL 3+
Build system: r
Synopsis: MEREC - Method Based on the Removal Effects of Criteria
Description:

Implementation of the MEthod based on the Removal Effects of Criteria - MEREC- a new objective weighting method for determining criteria weights for Multiple Criteria Decision Making problems, created by Mehdi Keshavarz-Ghorabaee (2021) <doi:10.3390/sym13040525>. Given a decision matrix, the function return the Merec´s weight vector and all intermediate matrix/vectors used to calculate it.

r-riverconn 0.3.31
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-rlang@1.1.6 r-reshape2@1.4.5 r-magrittr@2.0.4 r-igraph@2.2.1 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17 r-dodgr@0.4.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/damianobaldan/riverconn
Licenses: Expat
Build system: r
Synopsis: Fragmentation and Connectivity Indices for Riverscapes
Description:

Indices for assessing riverscape fragmentation, including the Dendritic Connectivity Index, the Population Connectivity Index, the River Fragmentation Index, the Probability of Connectivity, and the Integral Index of connectivity. For a review, see Jumani et al. (2020) <doi:10.1088/1748-9326/abcb37> and Baldan et al. (2022) <doi:10.1016/j.envsoft.2022.105470> Functions to calculate temporal indices improvement when fragmentation due to barriers is reduced are also included.

r-rattains 1.1.0
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-rlist@0.4.6.2 r-rlang@1.1.6 r-purrr@1.2.0 r-lifecycle@1.0.4 r-jsonlite@2.0.0 r-fs@1.6.6 r-fauxpas@0.5.2 r-dplyr@1.1.4 r-curl@7.0.0 r-crul@1.6.0 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/mps9506/rATTAINS
Licenses: Expat
Build system: r
Synopsis: Access EPA 'ATTAINS' Data
Description:

An R interface to United States Environmental Protection Agency (EPA) Assessment, Total Maximum Daily Load (TMDL) Tracking and Implementation System ('ATTAINS') data. ATTAINS is the EPA database used to track information provided by states about water quality assessments conducted under federal Clean Water Act requirements. ATTAINS information and API information is available at <https://www.epa.gov/waterdata/attains>.

r-reappraised 0.2
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-rlang@1.1.6 r-readxl@1.4.5 r-purrr@1.2.0 r-patchwork@1.3.2 r-officer@0.7.1 r-magrittr@2.0.4 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-flextable@0.9.10 r-dplyr@1.1.4 r-data-table@1.17.8 r-boot@1.3-32
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=reappraised
Licenses: Expat
Build system: r
Synopsis: Statistical Tools for Assessing Publication Integrity of Groups of Trials
Description:

Takes user-provided baseline data from groups of randomised controlled data and assesses whether the observed distribution of baseline p-values, numbers of participants in each group, or categorical variables are consistent with the expected distribution, as an aid to the assessment of integrity concerns in published randomised controlled trials. References (citations in PubMed format in details of each function): Bolland MJ, Avenell A, Gamble GD, Grey A. (2016) <doi:10.1212/WNL.0000000000003387>. Bolland MJ, Gamble GD, Avenell A, Grey A, Lumley T. (2019) <doi:10.1016/j.jclinepi.2019.05.006>. Bolland MJ, Gamble GD, Avenell A, Grey A. (2019) <doi:10.1016/j.jclinepi.2019.03.001>. Bolland MJ, Gamble GD, Grey A, Avenell A. (2020) <doi:10.1111/anae.15165>. Bolland MJ, Gamble GD, Avenell A, Cooper DJ, Grey A. (2021) <doi:10.1016/j.jclinepi.2020.11.012>. Bolland MJ, Gamble GD, Avenell A, Grey A. (2021) <doi:10.1016/j.jclinepi.2021.05.002>. Bolland MJ, Gamble GD, Avenell A, Cooper DJ, Grey A. (2023) <doi:10.1016/j.jclinepi.2022.12.018>. Carlisle JB, Loadsman JA. (2017) <doi:10.1111/anae.13650>. Carlisle JB. (2017) <doi:10.1111/anae.13938>.

r-riskpredictclustdata 0.2.6
Propagated dependencies: r-mvtnorm@1.3-3 r-mass@7.3-65 r-hmisc@5.2-4 r-gee@4.13-29
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=riskPredictClustData
Licenses: GPL 2+
Build system: r
Synopsis: Assessing Risk Predictions for Clustered Data
Description:

Assessing and comparing risk prediction rules for clustered data. The method is based on the paper: Rosner B, Qiu W, and Lee MLT.(2013) <doi: 10.1007/s10985-012-9240-6>.

r-risks 0.4.3
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-sandwich@3.1-1 r-rlang@1.1.6 r-purrr@1.2.0 r-dplyr@1.1.4 r-broom@1.0.10 r-boot@1.3-32 r-bcaboot@0.2-3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://stopsack.github.io/risks/
Licenses: GPL 3
Build system: r
Synopsis: Estimate Risk Ratios and Risk Differences using Regression
Description:

Risk ratios and risk differences are estimated using regression models that allow for binary, categorical, and continuous exposures and confounders. Implemented are marginal standardization after fitting logistic models (g-computation) with delta-method and bootstrap standard errors, Miettinen's case-duplication approach (Schouten et al. 1993, <doi:10.1002/sim.4780121808>), log-binomial (Poisson) models with empirical variance (Zou 2004, <doi:10.1093/aje/kwh090>), binomial models with starting values from Poisson models (Spiegelman and Hertzmark 2005, <doi:10.1093/aje/kwi188>), and others.

r-redbookperu 0.0.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/PaulESantos/redbookperu
Licenses: Expat
Build system: r
Synopsis: Access and Analyze Data from the Red Book of Endemic Plants of Peru
Description:

This package provides access to and analysis of data from "The Red Book of Endemic Plants of Peru" (León, B., Roque, J., Ulloa, C., Jorgensen, P.M., Pitman, N., Cano, A. 2006) <doi:10.15381/rpb.v13i2.1782>. This package offers comprehensive taxonomic, geographic, and conservation information about Peru's endemic plant species. It includes functions to verify species inclusion, obtain updated taxonomic details, and explore the dataset.

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