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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-rbest 1.8-2
Dependencies: pngquant@2.12.6 pandoc@2.19.2
Propagated dependencies: r-stanheaders@2.32.10 r-rstantools@2.5.0 r-rstan@2.32.7 r-rlang@1.1.6 r-rcppparallel@5.1.11-1 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-mvtnorm@1.3-3 r-matrixstats@1.5.0 r-lifecycle@1.0.4 r-jsonlite@2.0.0 r-ggplot2@4.0.1 r-formula@1.2-5 r-dplyr@1.1.4 r-checkmate@2.3.3 r-bh@1.87.0-1 r-bayesplot@1.14.0 r-assertthat@0.2.1 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://opensource.nibr.com/RBesT/
Licenses: GPL 3+
Build system: r
Synopsis: R Bayesian Evidence Synthesis Tools
Description:

Tool-set to support Bayesian evidence synthesis. This includes meta-analysis, (robust) prior derivation from historical data, operating characteristics and analysis (1 and 2 sample cases). Please refer to Weber et al. (2021) <doi:10.18637/jss.v100.i19> for details on applying this package while Neuenschwander et al. (2010) <doi:10.1177/1740774509356002> and Schmidli et al. (2014) <doi:10.1111/biom.12242> explain details on the methodology.

r-rayrender 0.38.10
Dependencies: tbb@2021.6.0
Propagated dependencies: r-withr@3.0.2 r-vctrs@0.6.5 r-testthat@3.3.0 r-spacefillr@0.4.0 r-rcppthread@2.2.0 r-rcpp@1.1.0 r-rayvertex@0.12.0 r-rayimage@0.15.1 r-raster@3.6-32 r-progress@1.2.3 r-png@0.1-8 r-pillar@1.11.1 r-magrittr@2.0.4 r-decido@0.4.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://www.rayrender.net
Licenses: GPL 3
Build system: r
Synopsis: Build and Raytrace 3D Scenes
Description:

Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the Wavefront OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.

r-rrmlrfmc 0.4.0
Propagated dependencies: r-nnet@7.3-20
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RRMLRfMC
Licenses: GPL 2
Build system: r
Synopsis: Reduced-Rank Multinomial Logistic Regression for Markov Chains
Description:

Fit the reduced-rank multinomial logistic regression model for Markov chains developed by Wang, Abner, Fardo, Schmitt, Jicha, Eldik and Kryscio (2021)<doi:10.1002/sim.8923> in R. It combines the ideas of multinomial logistic regression in Markov chains and reduced-rank. It is very useful in a study where multi-states model is assumed and each transition among the states is controlled by a series of covariates. The key advantage is to reduce the number of parameters to be estimated. The final coefficients for all the covariates and the p-values for the interested covariates will be reported. The p-values for the whole coefficient matrix can be calculated by two bootstrap methods.

r-rhierbaps 1.1.4
Propagated dependencies: r-purrr@1.2.0 r-patchwork@1.3.2 r-matrixstats@1.5.0 r-ggplot2@4.0.1 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/gtonkinhill/rhierbaps
Licenses: Expat
Build system: r
Synopsis: Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Description:

This package implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original MATLAB version removes singleton SNPs by default.

r-ricci 0.1.1
Propagated dependencies: r-rlang@1.1.6 r-cli@3.6.5 r-calculus@1.1.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/lschneiderbauer/ricci
Licenses: GPL 3+
Build system: r
Synopsis: Ricci Calculus
Description:

This package provides a compact R interface for performing tensor calculations. This is achieved by allowing (upper and lower) index labeling of arrays and making use of Ricci calculus conventions to implicitly trigger contractions and diagonal subsetting. Explicit tensor operations, such as addition, subtraction and multiplication of tensors via the standard operators, raising and lowering indices, taking symmetric or antisymmetric tensor parts, as well as the Kronecker product are available. Common tensors like the Kronecker delta, Levi Civita epsilon, certain metric tensors, the Christoffel symbols, the Riemann as well as Ricci tensors are provided. The covariant derivative of tensor fields with respect to any metric tensor can be evaluated. An effort was made to provide the user with useful error messages.

r-rdml 1.1
Propagated dependencies: r-xml2@1.5.0 r-stringr@1.6.0 r-rlist@0.4.6.2 r-readxl@1.4.5 r-r6@2.6.1 r-piper@0.6.1.3 r-lubridate@1.9.4 r-data-table@1.17.8 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/PCRuniversum/RDML
Licenses: Expat
Build system: r
Synopsis: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files
Description:

Imports real-time thermo cycler (qPCR) data from Real-time PCR Data Markup Language (RDML) and transforms to the appropriate formats of the qpcR and chipPCR packages, as described in Rodiger et al. (2017) <doi:10.1093/bioinformatics/btx528>. Contains a dendrogram visualization for the structure of RDML object and GUI for RDML editing.

r-rdocdump 0.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/e-kotov/rdocdump
Licenses: Expat
Build system: r
Synopsis: Dump 'R' Package Source, Documentation, and Vignettes into One File
Description:

Dump source code, documentation and vignettes of an R package into a single file. Supports installed packages, tar.gz archives, and package source directories. If the package is not installed, only its source is automatically downloaded from CRAN for processing. The output is a single plain text file or a character vector, which is useful to ingest complete package documentation and source into a large language model (LLM) or pass it further to other tools, such as ragnar <https://github.com/tidyverse/ragnar> to create a Retrieval-Augmented Generation (RAG) workflow.

r-rgn 1.0.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/ClimateAnalytics/RGN/
Licenses: Expat
Build system: r
Synopsis: Robust-Gauss Newton (RGN) Optimization of Sum-of-Squares Objective Function
Description:

Implementation of the Robust Gauss-Newton (RGN) algorithm, designed for solving optimization problems with a sum of least squares objective function. For algorithm details please refer to Qin et. al. (2018) <doi:10.1029/2017WR022488>.

r-revticulate 1.0.0
Propagated dependencies: r-usethis@3.2.1 r-stringr@1.6.0 r-rstudioapi@0.17.1 r-knitr@1.50 r-jsonlite@2.0.0 r-comprehenr@0.6.10 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=Revticulate
Licenses: Expat
Build system: r
Synopsis: Interaction with "RevBayes" in R
Description:

Interaction with "RevBayes" via R. Objects created in "RevBayes" can be passed into the R environment, and many types can be converted into similar R objects. To download "RevBayes", go to <https://revbayes.github.io/download>.

r-rneighborgwas 1.2.5
Propagated dependencies: r-rcppparallel@5.1.11-1 r-matrix@1.7-4 r-gaston@1.6
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rNeighborGWAS
Licenses: GPL 3
Build system: r
Synopsis: Testing Neighbor Effects in Marker-Based Regressions
Description:

To incorporate neighbor genotypic identity into genome-wide association studies, the package provides a set of functions for variation partitioning and association mapping. The theoretical background of the method is described in Sato et al. (2021) <doi:10.1038/s41437-020-00401-w>.

r-rstoolbox 1.0.2.2
Propagated dependencies: r-xml@3.99-0.20 r-tidyr@1.3.1 r-terra@1.8-86 r-sf@1.0-23 r-reshape2@1.4.5 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-magrittr@2.0.4 r-lifecycle@1.0.4 r-ggplot2@4.0.1 r-exactextractr@0.10.0 r-dplyr@1.1.4 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://bleutner.github.io/RStoolbox/
Licenses: GPL 3+
Build system: r
Synopsis: Remote Sensing Data Analysis
Description:

Toolbox for remote sensing image processing and analysis such as calculating spectral indexes, principal component transformation, unsupervised and supervised classification or fractional cover analyses.

r-rstatscn 1.1.3
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: http://www.bagualu.net/
Licenses: ASL 2.0
Build system: r
Synopsis: R Interface for China National Data
Description:

R interface for china national data <http://data.stats.gov.cn/>, some convenient functions for accessing the national data are provided.

r-roxigraph 0.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/cboettig/roxigraph
Licenses: Expat
Build system: r
Synopsis: 'RDF' and 'SPARQL' for R using 'Oxigraph'
Description:

This package provides RDF storage and SPARQL 1.1 query capabilities by wrapping the Oxigraph graph database library <https://github.com/oxigraph/oxigraph>. Supports in-memory and persistent ('RocksDB') storage, multiple RDF serialization formats ('Turtle', N-Triples', RDF-XML', N-Quads', TriG'), and full SPARQL 1.1 Query and Update support. Built using the extendr framework for Rust'-R bindings.

r-rdomains 0.2.1
Propagated dependencies: r-xml2@1.5.0 r-xml@3.99-0.20 r-virustotal@0.5.0 r-urltools@1.7.3.1 r-r-utils@2.13.0 r-matrix@1.7-4 r-jsonlite@2.0.0 r-httr@1.4.7 r-glmnet@4.1-10 r-devtools@2.4.6 r-curl@7.0.0 r-aws-alexa@0.1.8
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rdomains
Licenses: Expat
Build system: r
Synopsis: Get the Category of Content Hosted by a Domain
Description:

Get the category of content hosted by a domain. Use Shallalist <http://shalla.de/>, Virustotal (which provides access to lots of services) <https://www.virustotal.com/>, Alexa <https://aws.amazon.com/awis/>, DMOZ <https://curlie.org/>, University Domain list <https://github.com/Hipo/university-domains-list> or validated machine learning classifiers based on Shallalist data to learn about the kind of content hosted by a domain.

r-responsepatterns 0.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=responsePatterns
Licenses: Expat
Build system: r
Synopsis: Screening for Careless Responding Patterns
Description:

Some survey participants tend to respond carelessly which complicates data analysis. This package provides functions that make it easier to explore responses and identify those that may be problematic. See Gottfried et al. (2022) <doi:10.7275/vyxb-gt24> for more information.

r-rr2 1.1.1
Propagated dependencies: r-phyr@1.1.3 r-phylolm@2.6.5 r-nlme@3.1-168 r-matrix@1.7-4 r-lme4@1.1-37 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/arives/rr2
Licenses: GPL 3
Build system: r
Synopsis: R2s for Regression Models
Description:

Three methods to calculate R2 for models with correlated errors, including Phylogenetic GLS, Phylogenetic Logistic Regression, Linear Mixed Models (LMMs), and Generalized Linear Mixed Models (GLMMs). See details in Ives 2018 <doi:10.1093/sysbio/syy060>.

r-rm-weights 2.0
Propagated dependencies: r-psychotools@0.7-5 r-hmisc@5.2-4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RM.weights
Licenses: FSDG-compatible
Build system: r
Synopsis: Weighted Rasch Modeling and Extensions using Conditional Maximum Likelihood
Description:

Rasch model and extensions for survey data, using Conditional Maximum likelihood (CML). Carlo Cafiero, Sara Viviani, Mark Nord (2018) <doi:10.1016/j.measurement.2017.10.065>.

r-rcrisp 0.3.1
Propagated dependencies: r-visor@0.1.1 r-units@1.0-0 r-tidygraph@1.3.1 r-terra@1.8-86 r-stringr@1.6.0 r-sfnetworks@0.6.5 r-sfheaders@0.4.5 r-sf@1.0-23 r-rstac@1.0.1 r-rlang@1.1.6 r-rcoins@0.4.0 r-osmdata@0.3.0 r-lwgeom@0.2-14 r-dplyr@1.1.4 r-dbscan@1.2.3 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cityriverspaces.github.io/rcrisp/
Licenses: FSDG-compatible
Build system: r
Synopsis: Automate the Delineation of Urban River Spaces
Description:

This package provides tools to automate the morphological delineation of riverside urban areas based on a method introduced in Forgaci (2018) <doi:10.7480/abe.2018.31>. Delineation entails the identification of corridor boundaries, segmentation of the corridor, and delineation of the river space using two-dimensional spatial information from street network data and digital elevation data in a projected CRS. The resulting delineation can be used to characterise spatial phenomena that can be related to the river as a central element.

r-rmacrostrat 1.0.0
Propagated dependencies: r-sf@1.0-23 r-jsonlite@2.0.0 r-httr@1.4.7 r-geojsonsf@2.0.5 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://rmacrostrat.palaeoverse.org
Licenses: GPL 3+
Build system: r
Synopsis: Fetch Geologic Data from the 'Macrostrat' Platform
Description:

Work with the Macrostrat (<https://macrostrat.org/>) Web Service (v.2, <https://macrostrat.org/api/v2>) to fetch geological data relevant to the spatial and temporal distribution of sedimentary, igneous, and metamorphic rocks as well as data extracted from them.

r-rsquaredmi 0.2.0
Propagated dependencies: r-mice@3.18.0 r-matrixstats@1.5.0 r-lm-beta@1.7-3 r-altr2@1.1.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/karchjd/RsquaredMI
Licenses: AGPL 3+
Build system: r
Synopsis: R-Squared with Multiply Imputed Data
Description:

This package provides R-squared values and standardized regression coefficients for linear models applied to multiply imputed datasets as obtained by mice'. Confidence intervals, zero-order correlations, and alternative adjusted R-squared estimates are also available. The methods are described in Van Ginkel and Karch (2024) <doi:10.1111/bmsp.12344> and in Van Ginkel (2020) <doi:10.1007/s11336-020-09696-4>.

r-rollbar 0.1.0
Propagated dependencies: r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rollbar
Licenses: Expat
Build system: r
Synopsis: Error Tracking and Logging
Description:

Reports errors and messages to Rollbar, the error tracking platform <https://rollbar.com>.

r-risca 1.0.7
Propagated dependencies: r-tune@2.0.1 r-survival@3.8-3 r-superlearner@2.0-29 r-statmod@1.5.1 r-rpart@4.1.24 r-reticulate@1.44.1 r-relsurv@2.3-3 r-nnet@7.3-20 r-nlme@3.1-168 r-mvtnorm@1.3-3 r-mosaic@1.9.2 r-mass@7.3-65 r-kernlab@0.9-33 r-glmnet@4.1-10 r-foreach@1.5.2 r-doparallel@1.0.17 r-cubature@2.1.4-1 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RISCA
Licenses: GPL 2+
Build system: r
Synopsis: Causal Inference and Prediction in Cohort-Based Analyses
Description:

Numerous functions for cohort-based analyses, either for prediction or causal inference. For causal inference, it includes Inverse Probability Weighting and G-computation for marginal estimation of an exposure effect when confounders are expected. We deal with binary outcomes, times-to-events, competing events, and multi-state data. For multistate data, semi-Markov model with interval censoring may be considered, and we propose the possibility to consider the excess of mortality related to the disease compared to reference lifetime tables. For predictive studies, we propose a set of functions to estimate time-dependent receiver operating characteristic (ROC) curves with the possible consideration of right-censoring times-to-events or the presence of confounders. Finally, several functions are available to assess time-dependent ROC curves or survival curves from aggregated data.

r-rbmi 1.6.0
Propagated dependencies: r-stringr@1.6.0 r-r6@2.6.1 r-pkgload@1.4.1 r-mmrm@0.3.17 r-matrix@1.7-4 r-jinjar@0.3.2 r-fs@1.6.6 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://openpharma.github.io/rbmi/
Licenses: FSDG-compatible
Build system: r
Synopsis: Reference Based Multiple Imputation
Description:

This package implements standard and reference based multiple imputation methods for continuous longitudinal endpoints (Gower-Page et al. (2022) <doi:10.21105/joss.04251>). In particular, this package supports deterministic conditional mean imputation and jackknifing as described in Wolbers et al. (2022) <doi:10.1002/pst.2234>, Bayesian multiple imputation as described in Carpenter et al. (2013) <doi:10.1080/10543406.2013.834911>, and bootstrapped maximum likelihood imputation as described in von Hippel and Bartlett (2021) <doi: 10.1214/20-STS793>.

r-rslp 0.2.0
Propagated dependencies: r-tokenizers@0.3.0 r-stringr@1.6.0 r-stringi@1.8.7 r-plyr@1.8.9 r-magrittr@2.0.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/dfalbel/rslp
Licenses: Expat
Build system: r
Synopsis: Stemming Algorithm for the Portuguese Language
Description:

This package implements the "Stemming Algorithm for the Portuguese Language" <DOI:10.1109/SPIRE.2001.10024>.

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