This package provides functions to convert text data for labelling into format appropriate for importing into Qualtrics. Supports multiple language, including right-to-left scripts as well as different response types. Outputs an Advance Format .txt file that read into Qualtrics.

Offers a suite of functions to prepare questionnaire data for analysis (perhaps other types of data as well). By data preparation, I mean data analytic tasks to get your raw data ready for statistical modeling (e.g., regression). There are functions to investigate missing data, reshape data, validate responses, recode variables, score questionnaires, center variables, aggregate by groups, shift scores (i.e., leads or lags), etc. It provides functions for both single level and multilevel (i.e., grouped) data. With a few exceptions (e.g., ncases()), functions without an "s" at the end of their primary word (e.g., center_by()) act on atomic vectors, while functions with an "s" at the end of their primary word (e.g., centers_by()) act on multiple columns of a data.frame.

Given a dataset, the user is invited to utilize the Empirical Cumulative Distribution Function (ECDF) to guess interactively the mean and the mean deviation. Thereafter, using the quadratic curve the user can guess the Root Mean Squared Deviation (RMSD) and visualize the standard deviation (SD). For details, see Sarkar and Rashid (2019)<doi:10.3126/njs.v3i0.25574>, Have You Seen the Standard Deviaton?, Nepalese Journal of Statistics, Vol. 3, 1-10.

Uses the fst package to store genotype probabilities on disk for the qtl2 package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

This package provides functions for unconditional and conditional quantiles. These include methods for transformation-based quantile regression, quantile-based measures of location, scale and shape, methods for quantiles of discrete variables, quantile-based multiple imputation, restricted quantile regression, directional quantile classification, and quantile ratio regression. A vignette is given in Geraci (2016, The R Journal) <doi:10.32614/RJ-2016-037> and included in the package.

We implement an adaptation of Jiang & Zeng's (1995) <doi:10.1093/genetics/140.3.1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.

Create surface forms from matrix or raster data for flexible plotting and conversion to other mesh types. The functions quadmesh or triangmesh produce a continuous surface as a mesh3d object as used by the rgl package. This is used for plotting raster data in 3D (optionally with texture), and allows the application of a map projection without data loss and many processing applications that are restricted by inflexible regular grid rasters. There are discrete forms of these continuous surfaces available with dquadmesh and dtriangmesh functions.

This package provides tools for (automated and manual) quality control of the results of Genome Wide Association Studies.

Design of QTL (quantitative trait locus) experiments involves choosing which strains to cross, the type of cross, genotyping strategies, phenotyping strategies, and the number of progeny to raise and phenotype. This package provides tools to help make such choices. Sen and others (2007) <doi:10.1007/s00335-006-0090-y>.

This package provides methods for statistical analysis of count data and quantal data. For the analysis of count data an implementation of the Closure Principle Computational Approach Test ("CPCAT") is provided (Lehmann, R et al. (2016) <doi:10.1007/s00477-015-1079-4>), as well as an implementation of a "Dunnett GLM" approach using a Quasi-Poisson regression (Hothorn, L, Kluxen, F (2020) <doi:10.1101/2020.01.15.907881>). For the analysis of quantal data an implementation of the Closure Principle Fisherâ Freemanâ Halton test ("CPFISH") is provided (Lehmann, R et al. (2018) <doi:10.1007/s00477-017-1392-1>). P-values and no/lowest observed (adverse) effect concentration values are calculated. All implemented methods include further functions to evaluate the power and the minimum detectable difference using a bootstrapping approach.

This function aims to calculate risk of developing cardiovascular disease of individual patients in next 10 years. This unofficial package was based on published open-sourced free risk prediction algorithm QRISK3-2017 <https://qrisk.org/src.php>.

High-throughput analysis of growth curves and fluorescence data using three methods: linear regression, growth model fitting, and smooth spline fit. Analysis of dose-response relationships via smoothing splines or dose-response models. Complete data analysis workflows can be executed in a single step via user-friendly wrapper functions. The results of these workflows are summarized in detailed reports as well as intuitively navigable R data containers. A shiny application provides access to all features without requiring any programming knowledge. The package is described in further detail in Wirth et al. (2023) <doi:10.1038/s41596-023-00850-7>.

This package implements quantile-based discriminant analysis (QuanDA) for imbalanced classification in high-dimensional, low-sample-size settings. The method fits penalized quantile regression directly on discrete class labels and tunes the quantile level to reflect class imbalance.

This package provides a brms'-like interface for fitting Bayesian regression models using INLA (Integrated Nested Laplace Approximations) and TMB (Template Model Builder). The package offers faster model fitting while maintaining familiar brms syntax and output formats. Supports fixed and mixed effects models, multiple probability distributions, conditional effects plots, and posterior predictive checks with summary methods compatible with brms'. TMB integration provides fast ordinal regression capabilities. Implements methods adapted from emmeans for marginal means estimation and bayestestR for Bayesian inference assessment. Methods are based on Rue et al. (2009) <doi:10.1111/j.1467-9868.2008.00700.x>, Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>, Lenth (2016) <doi:10.18637/jss.v069.i01>, Bürkner (2017) <doi:10.18637/jss.v080.i01>, Makowski et al. (2019) <doi:10.21105/joss.01541>, and Kruschke (2014, ISBN:9780124058880).

Estimation of different quantile models, at the moment only Conditional autoregressive value at risk (CAViaR) proposed by Engle & Manganelli (2004) <doi:10.1198/073500104000000370> with also the specification proposed in Huang et al. (2009) <doi:10.1016/j.eneco.2008.12.006> and it's multivariate extension, Multi-variate multi-quantile CAViaR (MVMQ-CAViaR) proposed by White et al. (2015) <doi:10.1016/j.jeconom.2015.02.004> are available, however, in further updates, other models and extensions will be included.

Companion package to quallmer providing an interactive shiny application for manual coding, reviewing large language model (LLM) generated annotations, and computing inter-rater reliability metrics. Supports three modes: blind manual coding, LLM output validation, and agreement calculation. Computes standard reliability metrics including Krippendorff's alpha (Krippendorff 2019 <doi:10.4135/9781071878781>), Cohen's kappa, Fleiss kappa (Fleiss 1971 <doi:10.1037/h0031619>), intraclass correlation coefficient (ICC), and percent agreement for nominal, ordinal, interval, and ratio data. Also computes gold-standard validation metrics including accuracy, precision, recall, and F1 scores following Sokolova and Lapalme (2009 <doi:10.1016/j.ipm.2009.03.002>).

This package provides routines to create some quaternions splines: Barry-Goldman algorithm, De Casteljau algorithm, and Kochanek-Bartels algorithm. The implementations are based on the Python library splines'. Quaternions splines allow to construct spherical curves. References: Barry and Goldman <doi:10.1145/54852.378511>, Kochanek and Bartels <doi:10.1145/800031.808575>.

Quick Response codes (QR codes) are a type of matrix bar code and can be used to authenticate transactions, provide access to multi-factor authentication services and enable general data transfer in an image. QR codes use four standardized encoding modes (numeric, alphanumeric, byte/binary, and kanji) to efficiently store data. Matrix barcode generation is performed efficiently in C via the included libqrencoder library created by Kentaro Fukuchi.

Quantile regression (QR) for Linear Mixed-Effects Models via the asymmetric Laplace distribution (ALD). It uses the Stochastic Approximation of the EM (SAEM) algorithm for deriving exact maximum likelihood estimates and full inference results for the fixed-effects and variance components. It also provides graphical summaries for assessing the algorithm convergence and fitting results.

This package provides a range of quadratic forms are evaluated, using efficient methods. Unnecessary transposes are not performed. Complex values are handled consistently.

Translate SQL SELECT statements into lists of R expressions.

Reads the versioned exchange files written by the Zotero plugins zotQDA and qdaZ -- coded fragments, code systems, coding histories and team-consensus results -- validates them against the shipped contract, and reproduces the plugin's graphics with ggplot2'. Adds what those plugins deliberately leave out: six agreement coefficients with bootstrap confidence intervals, the reliability of the segmentation itself, chi-squared tests of code by group tables with effect sizes, correspondence analysis, multidimensional scaling and hierarchical clustering of codes. Projects from other programs can be read through the REFI-QDA interchange standard <https://www.qdasoftware.org/>, which makes those analyses available to users of established software that does not offer them; the subset a .qdpx supports is reported on import. Reference files are included, so every function can be tried without a Zotero installation.

Automates many of the tasks associated with quantitative discourse analysis of transcripts containing discourse including frequency counts of sentence types, words, sentences, turns of talk, syllables and other assorted analysis tasks. The package provides parsing tools for preparing transcript data. Many functions enable the user to aggregate data by any number of grouping variables, providing analysis and seamless integration with other R packages that undertake higher level analysis and visualization of text. This affords the user a more efficient and targeted analysis. qdap is designed for transcript analysis, however, many functions are applicable to other areas of Text Mining/ Natural Language Processing.

Simplifies output suppression logic in R packages, as it's common to develop some form of it in R. quietR intends to simplify that problem and allow a set of simple toggle functions to be used to suppress console output.