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Recursive display of names and paths of all the items nested within sublists of a list object.
The header-only modern C++ template library Magic Enum for static reflection of enums (to string, from string, iteration) is provided by this package. More information about the underlying library can be found at its repository at <https://github.com/Neargye/magic_enum>.
Convert text into target classifications (e.g., ISO 3166-1) using a JSON mapping with regular expressions. Provides helpers to return the full mapping and associated metadata.
This package provides an efficient procedure for fitting the entire solution path for high-dimensional regularized quadratic generalized linear models with interactions effects under the strong or weak heredity constraint.
This package provides tools to perform random forest consensus clustering of different data types. The package is designed to accept a list of matrices from different assays, typically from high-throughput molecular profiling so that class discovery may be jointly performed. For references, please see Tao Shi & Steve Horvath (2006) <doi:10.1198/106186006X94072> & Monti et al (2003) <doi:10.1023/A:1023949509487> .
Researchers commonly need to summarize scientific information, a process known as evidence synthesis'. The first stage of a synthesis process (such as a systematic review or meta-analysis) is to download a list of references from academic search engines such as Web of Knowledge or Scopus'. The traditional approach to systematic review is then to sort these data manually, first by locating and removing duplicated entries, and then screening to remove irrelevant content by viewing titles and abstracts (in that order). revtools provides interfaces for each of these tasks. An alternative approach, however, is to draw on tools from machine learning to visualise patterns in the corpus. In this case, you can use revtools to render ordinations of text drawn from article titles, keywords and abstracts, and interactively select or exclude individual references, words or topics.
An ODBC database interface.
Implementation of a model-based clustering algorithm for ranking data (C. Biernacki, J. Jacques (2013) <doi:10.1016/j.csda.2012.08.008>). Multivariate rankings as well as partial rankings are taken into account. This algorithm is based on an extension of the Insertion Sorting Rank (ISR) model for ranking data, which is a meaningful and effective model parametrized by a position parameter (the modal ranking, quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity of the rank population is modelled by a mixture of ISR, whereas conditional independence assumption is considered for multivariate rankings.
The Tabular Matrix Problems via Pseudoinverse Estimation (TMPinv) is a two-stage estimation method that reformulates structured table-based systems - such as allocation problems, transaction matrices, and input-output tables - as structured least-squares problems. Based on the Convex Least Squares Programming (CLSP) framework, TMPinv solves systems with row and column constraints, block structure, and optionally reduced dimensionality by (1) constructing a canonical constraint form and applying a pseudoinverse-based projection, followed by (2) a convex-programming refinement stage to improve fit, coherence, and regularization (e.g., via Lasso, Ridge, or Elastic Net).
Understanding heterogeneous causal effects based on pretreatment covariates is a crucial step in modern empirical work in data science. Building on the recent developments in Calonico et al (2025) <https://rdpackages.github.io/references/Calonico-Cattaneo-Farrell-Palomba-Titiunik_2025_HTERD.pdf>, this package provides tools for estimation and inference of heterogeneous treatment effects in Regression Discontinuity (RD) Designs. The package includes two main commands: rdhte to conduct estimation and robust bias-corrected inference for conditional RD treatment effects (given choice of bandwidth parameter); rdbwhte', which implements automatic bandwidth selection methods; and rdhte_lincom to test linear combinations of parameters.
This package provides a data structure and toolkit for documenting and recoding categorical data that can be shared in other statistical software.
Presentation-ready results tables for epidemiologists in an automated, reproducible fashion. The user provides the final analytical dataset and specifies the design of the table, with rows and/or columns defined by exposure(s), effect modifier(s), and estimands as desired, allowing to show descriptors and inferential estimates in one table -- bridging the rift between epidemiologists and their data, one table at a time. See Rothman (2017) <doi:10.1007/s10654-017-0314-3>.
This package implements TRACDS (Temporal Relationships between Clusters for Data Streams), a generalization of Extensible Markov Model (EMM). TRACDS adds a temporal or order model to data stream clustering by superimposing a dynamically adapting Markov Chain. Also provides an implementation of EMM (TRACDS on top of tNN data stream clustering). Development of this package was supported in part by NSF IIS-0948893 and R21HG005912 from the National Human Genome Research Institute. Hahsler and Dunham (2010) <doi:10.18637/jss.v035.i05>.
This package provides an interface to access data from the International Union for Conservation of Nature (IUCN) Red List <https://api.iucnredlist.org/api-docs/index.html>. It allows users to retrieve up-to-date information on species conservation status, supporting biodiversity research and conservation efforts.
This package provides R6 classes, methods and utilities to construct, analyze, summarize, and visualize regression models.
STK++ <http://www.stkpp.org> is a collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen'-like API), regression, dimension reduction, etc. The integration of the library to R is using Rcpp'. The rtkore package includes the header files from the STK++ core library. All files contain only template classes and/or inline functions. STK++ is licensed under the GNU LGPL version 2 or later. rtkore (the stkpp integration into R') is licensed under the GNU GPL version 2 or later. See file LICENSE.note for details.
Use the <https://api.nbp.pl/> API through R. Retrieve currency exchange rates and gold prices data published by the National Bank of Poland in form of convenient R objects.
This package provides a report of statistical findings (RSF) project template is generated using a bookdown format. YAML fields can be further customized. Additional helper functions provide extra features to the RSF.
This tool proposes a new ranking algorithm that utilizes a "Y*WAASB" biplot generated by the metan'. The aim of the current package is to effectively distinguish the top-ranked genotypes in MET (Multi-Environmental Trials). For a detailed explanation of the process of obtaining "WAASB", "WAASBY" indices, and a "Y*WAASB" biplot, refer to the manual included in this package as well as the study by Olivoto & Lúcio (2020) <doi:10.1111/2041-210X.13384>. In this context, "WAASB" refers to the "Weighted Average of Absolute Scores" provided by Olivoto et al. (2019) <doi:10.2134/agronj2019.03.0220>, which quantifies the stability of genotypes across different environments using linear mixed-effect models. To run the package, you need to extract the "WAASB" and "WAASBY" coefficients using the metan and apply them. This tool utilizes PCA (Principal Component Analysis) and differentiates the entries which may be genotypes, hybrids, varieties, etc using "WAASB", "WAASBY", and a combination of the specified trait and WAASB index.
Interface to the UNU.RAN library for Universal Non-Uniform RANdom variate generators. Thus it allows to build non-uniform random number generators from quite arbitrary distributions. In particular, it provides an algorithm for fast numerical inversion for distribution with given density function. In addition, the package contains densities, distribution functions and quantiles from a couple of distributions.
This package provides tools for optimal subset matching of treated units and control units in observational studies, with support for refined covariate balance constraints, (including fine and near-fine balance as special cases). A close relative is the rcbalance package. See Pimentel, et al.(2015) <doi:10.1080/01621459.2014.997879> and Pimentel and Kelz (2020) <doi:10.1080/01621459.2020.1720693>. The rrelaxiv package, which provides an alternative solver for the underlying network flow problems, carries an academic license and is not available on CRAN, but may be downloaded from Github at <https://github.com/josherrickson/rrelaxiv/>.
R package based on Rcpp for MeCab': Yet Another Part-of-Speech and Morphological Analyzer. The purpose of this package is providing a seamless developing and analyzing environment for CJK texts. This package utilizes parallel programming for providing highly efficient text preprocessing posParallel() function. For installation, please refer to README.md file.
Processes and visualizes the output of complex phylogenetic analyses from the RevBayes phylogenetic graphical modeling software.
This package provides methods to calculate approximate regional consistency probabilities using Method 1 and Method 2 proposed by the Japanese Ministry of Health, Labor and Welfare (2007) <https://www.pmda.go.jp/files/000153265.pdf>. These methods are useful for assessing regional consistency in multi-regional clinical trials. The package can calculate unconditional, joint, and conditional regional consistency probabilities. For technical details, please see Homma (2024) <doi:10.1002/pst.2358>.