_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-selenider 0.4.1
Propagated dependencies: r-withr@3.0.2 r-vctrs@0.6.5 r-rlang@1.1.6 r-prettyunits@1.2.0 r-lifecycle@1.0.4 r-curl@7.0.0 r-coro@1.1.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ashbythorpe/selenider
Licenses: Expat
Build system: r
Synopsis: Concise, Lazy and Reliable Wrapper for 'chromote' and 'selenium'
Description:

This package provides a user-friendly wrapper for web automation, using either chromote or selenium'. Provides a simple and consistent API to make web scraping and testing scripts easy to write and understand. Elements are lazy, and automatically wait for the website to be valid, resulting in reliable and reproducible code, with no visible impact on the experience of the programmer.

r-scriptname 1.0.1
Propagated dependencies: r-rlang@1.1.6 r-purrr@1.2.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/MullinsLab/scriptName
Licenses: Expat
Build system: r
Synopsis: Determine a Script's Filename from Within the Script Itself
Description:

This package provides a small set of functions wrapping up the call stack and command line inspection needed to determine a running script's filename from within the script itself.

r-scdensity 1.0.3
Propagated dependencies: r-quadprog@1.5-8 r-lpsolve@5.6.23
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=scdensity
Licenses: GPL 2
Build system: r
Synopsis: Shape-Constrained Kernel Density Estimation
Description:

This package implements methods for obtaining kernel density estimates subject to a variety of shape constraints (unimodality, bimodality, symmetry, tail monotonicity, bounds, and constraints on the number of inflection points). Enforcing constraints can eliminate unwanted waves or kinks in the estimate, which improves its subjective appearance and can also improve statistical performance. The main function scdensity() is very similar to the density() function in stats', allowing shape-restricted estimates to be obtained with little effort. The methods implemented in this package are described in Wolters and Braun (2017) <doi:10.1080/03610918.2017.1288247>, Wolters (2012) <doi:10.18637/jss.v047.i06>, and Hall and Huang (2002) <https://www3.stat.sinica.edu.tw/statistica/j12n4/j12n41/j12n41.htm>. See the scdensity() help for for full citations.

r-spetestnp 1.1.0
Propagated dependencies: r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/HippolyteBoucher/SpeTestNP
Licenses: GPL 2
Build system: r
Synopsis: Non-Parametric Tests of Parametric Specifications
Description:

This package performs non-parametric tests of parametric specifications. Five tests are available. Specific bandwidth and kernel methods can be chosen along with many other options. Allows parallel computing to quickly compute p-values based on the bootstrap. Methods implemented in the package are H.J. Bierens (1982) <doi:10.1016/0304-4076(82)90105-1>, J.C. Escanciano (2006) <doi:10.1017/S0266466606060506>, P.L. Gozalo (1997) <doi:10.1016/S0304-4076(97)86571-2>, P. Lavergne and V. Patilea (2008) <doi:10.1016/j.jeconom.2007.08.014>, P. Lavergne and V. Patilea (2012) <doi:10.1198/jbes.2011.07152>, J.H. Stock and M.W. Watson (2006) <doi:10.1111/j.1538-4616.2007.00014.x>, C.F.J. Wu (1986) <doi:10.1214/aos/1176350142>, J. Yin, Z. Geng, R. Li, H. Wang (2010) <https://www.jstor.org/stable/24309002> and J.X. Zheng (1996) <doi:10.1016/0304-4076(95)01760-7>.

r-spatialge 1.2.2
Propagated dependencies: r-wordspace@0.2-9 r-uwot@0.2.4 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-spdep@1.4-1 r-spamm@4.6.1 r-sp@2.2-0 r-sfsmisc@1.1-23 r-sf@1.0-23 r-sctransform@0.4.2 r-scales@1.4.0 r-rlang@1.1.6 r-readxl@1.4.5 r-readr@2.1.6 r-rcppprogress@0.4.2 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-png@0.1-8 r-matrix@1.7-4 r-mass@7.3-65 r-magrittr@2.0.4 r-khroma@1.17.0 r-jsonlite@2.0.0 r-jpeg@0.1-11 r-hdf5r@1.3.12 r-gsva@2.4.1 r-gstat@2.1-4 r-ggrepel@0.9.6 r-ggpolypath@0.4.0 r-ggplot2@4.0.1 r-ggforce@0.5.0 r-ebimage@4.52.0 r-dynamictreecut@1.63-1 r-dplyr@1.1.4 r-delayedmatrixstats@1.32.0 r-delayedarray@0.36.0 r-data-table@1.17.8 r-concaveman@1.2.0 r-complexheatmap@2.26.0 r-biocparallel@1.44.0 r-arrow@22.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spatialGE
Licenses: Expat
Build system: r
Synopsis: Visualization and Analysis of Spatial Heterogeneity in Spatially-Resolved Gene Expression
Description:

Visualization and analysis of spatially resolved transcriptomics data. The spatialGE R package provides methods for visualizing and analyzing spatially resolved transcriptomics data, such as 10X Visium, CosMx, or csv/tsv gene expression matrices. It includes tools for spatial interpolation, autocorrelation analysis, tissue domain detection, gene set enrichment, and differential expression analysis using spatial mixed models.

r-stratcols 1.0.0
Propagated dependencies: r-stratigrapher@1.3.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://mindthegap-erc.github.io/stratcols/
Licenses: FSDG-compatible
Build system: r
Synopsis: Stratigraphic Columns and Order Metrics
Description:

Quantify stratigraphic disorder using the metrics defined by Burgess (2016) <doi:10.2110/jsr.2016.10>. Contains a range of utility tools to construct and manipulate stratigraphic columns.

r-sdprisk 1.1-6
Propagated dependencies: r-rootsolve@1.8.2.4 r-polynomf@2.0-8 r-numderiv@2016.8-1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sdprisk
Licenses: AGPL 3
Build system: r
Synopsis: Measures of Risk for the Compound Poisson Risk Process with Diffusion
Description:

Based on the compound Poisson risk process that is perturbed by a Brownian motion, saddlepoint approximations to some measures of risk are provided. Various approximation methods for the probability of ruin are also included. Furthermore, exact values of both the risk measures as well as the probability of ruin are available if the individual claims follow a hypo-exponential distribution (i. e., if it can be represented as a sum of independent exponentially distributed random variables with different rate parameters). For more details see Gatto and Baumgartner (2014) <doi:10.1007/s11009-012-9316-5>.

r-superpc 1.12
Propagated dependencies: r-survival@3.8-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://www-stat.stanford.edu/~tibs/superpc
Licenses: GPL 3+ FSDG-compatible
Build system: r
Synopsis: Supervised Principal Components
Description:

Does prediction in the case of a censored survival outcome, or a regression outcome, using the "supervised principal component" approach. Superpc is especially useful for high-dimensional data when the number of features p dominates the number of samples n (p >> n paradigm), as generated, for instance, by high-throughput technologies.

r-subformula 0.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/JonasMoss/subformula
Licenses: Expat
Build system: r
Synopsis: Create Subformulas of a Formula
Description:

This package provides a formula sub is a subformula of formula if all the terms on the right hand side of sub are terms of formula and their left hand sides are identical. This package aids in the creation of subformulas.

r-sffdr 1.1.0
Propagated dependencies: r-withr@3.0.2 r-qvalue@2.42.0 r-patchwork@1.3.2 r-locfit@1.5-9.12 r-ggplot2@4.0.1 r-fastglm@0.0.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ajbass/sffdr
Licenses: LGPL 2.0+
Build system: r
Synopsis: Surrogate Functional False Discovery Rates for Genome-Wide Association Studies
Description:

Pleiotropy-informed significance analysis of genome-wide association studies with surrogate functional false discovery rates (sfFDR). The sfFDR framework adapts the fFDR to leverage informative data from multiple sets of GWAS summary statistics to increase power in study while accommodating for linkage disequilibrium. sfFDR provides estimates of key FDR quantities in a significance analysis such as the functional local FDR and $q$-value, and uses these estimates to derive a functional $p$-value for type I error rate control and a functional local Bayes factor for post-GWAS analyses (e.g., fine mapping and colocalization).

r-stratifiedbalancing 0.3.0
Propagated dependencies: r-plyr@1.8.9 r-bnlearn@5.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=StratifiedBalancing
Licenses: GPL 2+
Build system: r
Synopsis: Stratified Covariate Balancing
Description:

This package performs Stratified Covariate Balancing with Markov blanket feature selection and use of synthetic cases. See Alemi et al. (2016) <DOI:10.1111/1475-6773.12628>.

r-snreg 1.2.0
Propagated dependencies: r-npsf@0.8.0 r-formula@1.2-5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://olegbadunenko.github.io/snreg/
Licenses: GPL 3
Build system: r
Synopsis: Regression with Skew-Normally Distributed Error Term
Description:

Models with skewâ normally distributed and thus asymmetric error terms, implementing the methods developed in Badunenko and Henderson (2023) "Production analysis with asymmetric noise" <doi:10.1007/s11123-023-00680-5>. The package provides tools to estimate regression models with skewâ normal error terms, allowing both the variance and skewness parameters to be heteroskedastic. It also includes a stochastic frontier framework that accommodates both i.i.d. and heteroskedastic inefficiency terms.

r-sobolnp 0.1.0
Propagated dependencies: r-pbmcapply@1.5.1 r-np@0.60-18 r-minqa@1.2.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/maikol-solis/sobolnp/
Licenses: Expat
Build system: r
Synopsis: Nonparametric Sobol Estimator with Bootstrap Bandwidth
Description:

Algorithm to estimate the Sobol indices using a non-parametric fit of the regression curve. The bandwidth is estimated using bootstrap to reduce the finite-sample bias. The package is based on the paper Solà s, M. (2018) <arXiv:1803.03333>.

r-superexacttest 1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/mw201608/SuperExactTest/
Licenses: GPL 3
Build system: r
Synopsis: Exact Test and Visualization of Multi-Set Intersections
Description:

Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al. (2015) <doi:10.1038/srep16923>.

r-soilwater 1.0.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ecor/soilwater
Licenses: GPL 2+
Build system: r
Synopsis: Implementation of Parametric Formulas for Soil Water Retention or Conductivity Curve
Description:

It implements parametric formulas of soil water retention or conductivity curve. At the moment, only Van Genuchten (for soil water retention curve) and Mualem (for hydraulic conductivity) were implemented. See reference (<http://en.wikipedia.org/wiki/Water_retention_curve>).

r-surveybootstrap 0.0.3
Propagated dependencies: r-stringr@1.6.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-purrr@1.2.0 r-plyr@1.8.9 r-functional@0.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=surveybootstrap
Licenses: Expat
Build system: r
Synopsis: Bootstrap with Survey Data
Description:

This package implements different kinds of bootstraps to estimate sampling variation from survey data with complex designs. Includes the rescaled bootstrap described in Rust and Rao (1996) <doi:10.1177/096228029600500305> and Rao and Wu (1988) <doi:10.1080/01621459.1988.10478591>.

r-stepcam 1.2.3
Propagated dependencies: r-gtools@3.9.5 r-geometry@0.5.2 r-fd@1.0-12.3 r-ape@5.8-1 r-ade4@1.7-23
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/thijsjanzen/STEPCAM
Licenses: GPL 2
Build system: r
Synopsis: ABC-SMC Inference of STEPCAM
Description:

Collection of model estimation, and model plotting functions related to the STEPCAM family of community assembly models. STEPCAM is a STEPwise Community Assembly Model that infers the relative contribution of Dispersal Assembly, Habitat Filtering and Limiting Similarity from a dataset consisting of the combination of trait and abundance data. See also <doi:10.1890/14-0454.1> for more information.

r-stratifiedmedicine 1.0.5
Propagated dependencies: r-survival@3.8-3 r-ranger@0.17.0 r-partykit@1.2-24 r-mvtnorm@1.3-3 r-glmnet@4.1-10 r-ggplot2@4.0.1 r-ggparty@1.0.0.1 r-dplyr@1.1.4 r-coin@1.4-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/thomasjemielita/StratifiedMedicine
Licenses: GPL 3
Build system: r
Synopsis: Stratified Medicine
Description:

This package provides a toolkit for stratified medicine, subgroup identification, and precision medicine. Current tools include (1) filtering models (reduce covariate space), (2) patient-level estimate models (counterfactual patient-level quantities, such as the conditional average treatment effect), (3) subgroup identification models (find subsets of patients with similar treatment effects), and (4) treatment effect estimation and inference (for the overall population and discovered subgroups). These tools can be customized and are directly used in PRISM (patient response identifiers for stratified medicine; Jemielita and Mehrotra 2019 <arXiv:1912.03337>. This package is in beta and will be continually updated.

r-scalelink 1.0-2
Propagated dependencies: r-rcppparallel@5.1.11-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=Scalelink
Licenses: GPL 2+
Build system: r
Synopsis: Create Scale Linkage Scores
Description:

Perform a probabilistic linkage of two data files using a scaling procedure using the methods described in Goldstein, H., Harron, K. and Cortina-Borja, M. (2017) <doi:10.1002/sim.7287>.

r-sampleselection 1.2-14
Propagated dependencies: r-vgam@1.1-13 r-systemfit@1.1-30 r-mvtnorm@1.3-3 r-misctools@0.6-28 r-maxlik@1.5-2.1 r-formula@1.2-5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://r-forge.r-project.org/projects/sampleselection/
Licenses: GPL 2+
Build system: r
Synopsis: Sample Selection Models
Description:

Two-step and maximum likelihood estimation of Heckman-type sample selection models: standard sample selection models (Tobit-2), endogenous switching regression models (Tobit-5), sample selection models with binary dependent outcome variable, interval regression with sample selection (only ML estimation), and endogenous treatment effects models. These methods are described in the three vignettes that are included in this package and in econometric textbooks such as Greene (2011, Econometric Analysis, 7th edition, Pearson).

r-syncmove 0.1-0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SyncMove
Licenses: GPL 2
Build system: r
Synopsis: Subsample Temporal Data to Synchronal Events and Compute the MCI
Description:

The function syncSubsample subsamples temporal data of different entities so that the result only contains synchronal events. The function mci calculates the Movement Coordination Index (MCI, see reference on help page for function mci') of a data set created with the function syncSubsample'.

r-sier 0.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SiER
Licenses: GPL 2
Build system: r
Synopsis: Signal Extraction Approach for Sparse Multivariate Response Regression
Description:

This package provides methods for regression with high-dimensional predictors and univariate or maltivariate response variables. It considers the decomposition of the coefficient matrix that leads to the best approximation to the signal part in the response given any rank, and estimates the decomposition by solving a penalized generalized eigenvalue problem followed by a least squares procedure. Ruiyan Luo and Xin Qi (2017) <doi:10.1016/j.jmva.2016.09.005>.

r-sgdinference 0.1.0
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/SGDinference-Lab/SGDinference/
Licenses: GPL 3
Build system: r
Synopsis: Inference with Stochastic Gradient Descent
Description:

Estimation and inference methods for large-scale mean and quantile regression models via stochastic (sub-)gradient descent (S-subGD) algorithms. The inference procedure handles cross-sectional data sequentially: (i) updating the parameter estimate with each incoming "new observation", (ii) aggregating it as a Polyak-Ruppert average, and (iii) computing an asymptotically pivotal statistic for inference through random scaling. The methodology used in the SGDinference package is described in detail in the following papers: (i) Lee, S., Liao, Y., Seo, M.H. and Shin, Y. (2022) <doi:10.1609/aaai.v36i7.20701> "Fast and robust online inference with stochastic gradient descent via random scaling". (ii) Lee, S., Liao, Y., Seo, M.H. and Shin, Y. (2023) <arXiv:2209.14502> "Fast Inference for Quantile Regression with Tens of Millions of Observations".

r-simplercache 0.3.3
Propagated dependencies: r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=simpleRCache
Licenses: LGPL 2.0+
Build system: r
Synopsis: Simple R Cache
Description:

Simple result caching in R based on R.cache. The global environment is not considered when caching results simplifying moving files between multiple instances of R. Relies on more base functions than R.cache (e.g. cached results are saved using saveRDS() and readRDS()).

Page: 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887
Total results: 21283