_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-sciber 0.2.2
Propagated dependencies: r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/RavenGan/SCIBER
Licenses: Expat
Build system: r
Synopsis: Single-Cell Integrator and Batch Effect Remover
Description:

Remove batch effects by projecting query batches into the reference batch space.

r-srcpkgs 0.2
Propagated dependencies: r-testthat@3.3.0 r-pkgload@1.4.1 r-devtools@2.4.6 r-clitable@0.1.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/kforner/srcpkgs
Licenses: GPL 3+
Build system: r
Synopsis: R Source Packages Manager
Description:

Manage a collection/library of R source packages. Discover, document, load, test source packages. Enable to use those packages as if they were actually installed. Quickly reload only what is needed on source code change. Run tests and checks in parallel.

r-surveillance 1.25.0
Propagated dependencies: r-xtable@1.8-4 r-spatstat-geom@3.6-1 r-sp@2.2-0 r-polycub@0.9.2 r-nlme@3.1-168 r-matrix@1.7-4 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://surveillance.R-Forge.R-project.org/
Licenses: GPL 2
Build system: r
Synopsis: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
Description:

Statistical methods for the modeling and monitoring of time series of counts, proportions and categorical data, as well as for the modeling of continuous-time point processes of epidemic phenomena. The monitoring methods focus on aberration detection in count data time series from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics, or social sciences. The package implements many typical outbreak detection procedures such as the (improved) Farrington algorithm, or the negative binomial GLR-CUSUM method of Hoehle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>. A novel CUSUM approach combining logistic and multinomial logistic modeling is also included. The package contains several real-world data sets, the ability to simulate outbreak data, and to visualize the results of the monitoring in a temporal, spatial or spatio-temporal fashion. A recent overview of the available monitoring procedures is given by Salmon et al. (2016) <doi:10.18637/jss.v070.i10>. For the retrospective analysis of epidemic spread, the package provides three endemic-epidemic modeling frameworks with tools for visualization, likelihood inference, and simulation. hhh4() estimates models for (multivariate) count time series following Paul and Held (2011) <doi:10.1002/sim.4177> and Meyer and Held (2014) <doi:10.1214/14-AOAS743>. twinSIR() models the susceptible-infectious-recovered (SIR) event history of a fixed population, e.g, epidemics across farms or networks, as a multivariate point process as proposed by Hoehle (2009) <doi:10.1002/bimj.200900050>. twinstim() estimates self-exciting point process models for a spatio-temporal point pattern of infective events, e.g., time-stamped geo-referenced surveillance data, as proposed by Meyer et al. (2012) <doi:10.1111/j.1541-0420.2011.01684.x>. A recent overview of the implemented space-time modeling frameworks for epidemic phenomena is given by Meyer et al. (2017) <doi:10.18637/jss.v077.i11>.

r-stim 1.0.0
Propagated dependencies: r-ryacas@1.1.6 r-lavaan@0.6-20
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=stim
Licenses: Expat
Build system: r
Synopsis: Incorporating Stability Information into Cross-Sectional Estimates
Description:

The goal of stim is to provide a function for estimating the Stability Informed Model. The Stability Informed Model integrates stability information (how much a variable correlates with itself in the future) into cross-sectional estimates. Wysocki and Rhemtulla (2022) <https://psyarxiv.com/vg5as>.

r-shinyanimate 0.4.0
Propagated dependencies: r-shiny@1.11.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/Swechhya/shinyanimate
Licenses: Expat
Build system: r
Synopsis: Animation for 'shiny' Elements
Description:

An extension of animate.css that allows user to easily add animations to any UI element in shiny app using the elements id.

r-sparsesem 4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sparseSEM
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Elastic Net Penalized Maximum Likelihood for Structural Equation Models with Network GPT Framework
Description:

This package provides elastic net penalized maximum likelihood estimator for structural equation models (SEM). The package implements `lasso` and `elastic net` (l1/l2) penalized SEM and estimates the model parameters with an efficient block coordinate ascent algorithm that maximizes the penalized likelihood of the SEM. Hyperparameters are inferred from cross-validation (CV). A Stability Selection (STS) function is also available to provide accurate causal effect selection. The software achieves high accuracy performance through a `Network Generative Pre-trained Transformer` (Network GPT) Framework with two steps: 1) pre-trains the model to generate a complete (fully connected) graph; and 2) uses the complete graph as the initial state to fit the `elastic net` penalized SEM.

r-songevo 1.0.0
Propagated dependencies: r-sp@2.2-0 r-lattice@0.22-7 r-geosphere@1.5-20 r-boot@1.3-32
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SongEvo
Licenses: GPL 3
Build system: r
Synopsis: An Individual-Based Model of Bird Song Evolution
Description:

Simulates the cultural evolution of quantitative traits of bird song. SongEvo is an individual- (agent-) based model. SongEvo is spatially-explicit and can be parameterized with, and tested against, measured song data. Functions are available for model implementation, sensitivity analyses, parameter optimization, model validation, and hypothesis testing.

r-sqlparser 0.1.0
Propagated dependencies: r-reticulate@1.44.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sqlparseR
Licenses: GPL 3
Build system: r
Synopsis: Wrapper for 'Python' Module 'sqlparse': Parse, Split, and Format 'SQL'
Description:

Wrapper for the non-validating SQL parser Python module sqlparse <https://github.com/andialbrecht/sqlparse>. It allows parsing, splitting, and formatting SQL statements.

r-statgensta 1.0.15
Propagated dependencies: r-xtable@1.8-4 r-spats@1.0-19 r-scales@1.4.0 r-rlang@1.1.6 r-qtl@1.72 r-maps@3.4.3 r-mapproj@1.2.12 r-lme4@1.1-37 r-knitr@1.50 r-gridextra@2.3 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-emmeans@2.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://biometris.github.io/statgenSTA/index.html
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Single Trial Analysis (STA) of Field Trials
Description:

Phenotypic analysis of field trials using mixed models with and without spatial components. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package asreml for the ASReml software, which can be obtained upon purchase from VSN international (<https://vsni.co.uk/software/asreml-r/>).

r-snpassoc 2.1-2
Propagated dependencies: r-tidyr@1.3.1 r-survival@3.8-3 r-poisbinom@1.0.2 r-plyr@1.8.9 r-mvtnorm@1.3-3 r-haplo-stats@1.9.7 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/isglobal-brge/SNPassoc
Licenses: GPL 2+
Build system: r
Synopsis: SNPs-Based Whole Genome Association Studies
Description:

This package provides functions to perform most of the common analysis in genome association studies are implemented. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated. The methods are described in Gonzalez JR et al., 2007 <doi: 10.1093/bioinformatics/btm025>.

r-survcorr 1.1
Propagated dependencies: r-survival@3.8-3 r-fields@17.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SurvCorr
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Correlation of Bivariate Survival Times
Description:

Estimates correlation coefficients with associated confidence limits for bivariate, partially censored survival times. Uses the iterative multiple imputation approach proposed by Schemper, Kaider, Wakounig and Heinze (2013) <doi:10.1002/sim.5874>. Provides a scatterplot function to visualize the bivariate distribution, either on the original time scale or as copula.

r-stevedata 1.8.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://svmiller.com/stevedata/
Licenses: GPL 2
Build system: r
Synopsis: Steve's Toy Data for Teaching About a Variety of Methodological, Social, and Political Topics
Description:

This is a collection of various kinds of data with broad uses for teaching. My students, and academics like me who teach the same topics I teach, should find this useful if their teaching workflow is also built around the R programming language. The applications are multiple but mostly cluster on topics of statistical methodology, international relations, and political economy.

r-simulmgf 0.1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/mngar/simulMGF
Licenses: Expat
Build system: r
Synopsis: Simulate SNP Matrix, Phenotype and Genotypic Effects
Description:

Simulate genotypes in SNP (single nucleotide polymorphisms) Matrix as random numbers from an uniform distribution, for diploid organisms (coded by 0, 1, 2), Sikorska et al., (2013) <doi:10.1186/1471-2105-14-166>, or half-sib/full-sib SNP matrix from real or simulated parents SNP data, assuming mendelian segregation. Simulate phenotypic traits for real or simulated SNP data, controlled by a specific number of quantitative trait loci and their effects, sampled from a Normal or an Uniform distributions, assuming a pure additive model. This is useful for testing association and genomic prediction models or for educational purposes.

r-solrad 1.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/bnasr/solrad/
Licenses: AGPL 3 FSDG-compatible
Build system: r
Synopsis: Calculating Solar Radiation and Related Variables Based on Location, Time and Topographical Conditions
Description:

For surface energy models and estimation of solar positions and components with varying topography, time and locations. The functions calculate solar top-of-atmosphere, open, diffuse and direct components, atmospheric transmittance and diffuse factors, day length, sunrise and sunset, solar azimuth, zenith, altitude, incidence, and hour angles, earth declination angle, equation of time, and solar constant. Details about the methods and equations are explained in Seyednasrollah, Bijan, Mukesh Kumar, and Timothy E. Link. On the role of vegetation density on net snow cover radiation at the forest floor. Journal of Geophysical Research: Atmospheres 118.15 (2013): 8359-8374, <doi:10.1002/jgrd.50575>.

r-sortable 0.6.0
Propagated dependencies: r-shiny@1.11.1 r-rlang@1.1.6 r-learnr@0.11.6 r-jsonlite@2.0.0 r-htmlwidgets@1.6.4 r-htmltools@0.5.8.1 r-cli@3.6.5 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://rstudio.github.io/sortable/
Licenses: Expat
Build system: r
Synopsis: Drag-and-Drop in 'shiny' Apps with 'SortableJS'
Description:

Enables drag-and-drop behaviour in Shiny apps, by exposing the functionality of the SortableJS <https://sortablejs.github.io/Sortable/> JavaScript library as an htmlwidget'. You can use this in Shiny apps and widgets, learnr tutorials as well as R Markdown. In addition, provides a custom learnr question type - question_rank() - that allows ranking questions with drag-and-drop.

r-spfilter 2.2.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/sjuhl/spfilteR
Licenses: GPL 3
Build system: r
Synopsis: Semiparametric Spatial Filtering with Eigenvectors in (Generalized) Linear Models
Description:

This package provides tools to decompose (transformed) spatial connectivity matrices and perform supervised or unsupervised semiparametric spatial filtering in a regression framework. The package supports unsupervised spatial filtering in standard linear as well as some generalized linear regression models.

r-skewhyperbolic 0.4-2
Propagated dependencies: r-generalizedhyperbolic@0.8-7 r-distributionutils@0.6-2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://r-forge.r-project.org/projects/rmetrics/
Licenses: GPL 2+
Build system: r
Synopsis: The Skew Hyperbolic Student t-Distribution
Description:

This package provides functions are provided for the density function, distribution function, quantiles and random number generation for the skew hyperbolic t-distribution. There are also functions that fit the distribution to data. There are functions for the mean, variance, skewness, kurtosis and mode of a given distribution and to calculate moments of any order about any centre. To assess goodness of fit, there are functions to generate a Q-Q plot, a P-P plot and a tail plot.

r-shinyhttr 1.1.0
Propagated dependencies: r-shinywidgets@0.9.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/curso-r/shinyhttr
Licenses: Expat
Build system: r
Synopsis: Progress Bars for Downloads in 'shiny' Apps
Description:

Modifies the progress() function from httr package to let it send output to progressBar() function from shinyWidgets package. It is just a tweak at the original functions from httr package to make it smooth for shiny developers.

r-statda 1.7.11
Propagated dependencies: r-xtable@1.8-4 r-sp@2.2-0 r-sgeostat@1.0-27 r-robustbase@0.99-6 r-rgl@1.3.31 r-mgcv@1.9-4 r-mba@0.1-2 r-mass@7.3-65 r-geor@1.9-6 r-e1071@1.7-16 r-cluster@2.1.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://cstat.tuwien.ac.at/filz/
Licenses: GPL 3+
Build system: r
Synopsis: Statistical Analysis for Environmental Data
Description:

Statistical analysis methods for environmental data are implemented. There is a particular focus on robust methods, and on methods for compositional data. In addition, larger data sets from geochemistry are provided. The statistical methods are described in Reimann, Filzmoser, Garrett, Dutter (2008, ISBN:978-0-470-98581-6).

r-scpipeline 0.2.0.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-singler@2.12.0 r-seurat@5.3.1 r-rlang@1.1.6 r-magrittr@2.0.4 r-dplyr@1.1.4 r-celldex@1.20.0 r-biomart@2.66.0 r-batchelor@1.26.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=scPipeline
Licenses: Expat
Build system: r
Synopsis: Wrapper for 'Seurat' and Related R Packages for End-to-End Single Cell Analysis
Description:

Reports markers list, differentially expressed genes, associated pathways, cell-type annotations, does batch correction and other related single cell analyses all wrapped within Seurat'.

r-scinsight 0.1.5
Propagated dependencies: r-stringr@1.6.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rann@2.6.2 r-igraph@2.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/Vivianstats/scINSIGHT
Licenses: GPL 3
Build system: r
Synopsis: Interpretation of Heterogeneous Single-Cell Gene Expression Data
Description:

We develop a novel matrix factorization tool named scINSIGHT to jointly analyze multiple single-cell gene expression samples from biologically heterogeneous sources, such as different disease phases, treatment groups, or developmental stages. Given multiple gene expression samples from different biological conditions, scINSIGHT simultaneously identifies common and condition-specific gene modules and quantify their expression levels in each sample in a lower-dimensional space. With the factorized results, the inferred expression levels and memberships of common gene modules can be used to cluster cells and detect cell identities, and the condition-specific gene modules can help compare functional differences in transcriptomes from distinct conditions. Please also see Qian K, Fu SW, Li HW, Li WV (2022) <doi:10.1186/s13059-022-02649-3>.

r-survah 1.2.0
Propagated dependencies: r-survival@3.8-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=survAH
Licenses: GPL 2
Build system: r
Synopsis: Survival Data Analysis using Average Hazard
Description:

This package performs two-sample comparisons based on average hazard with survival weight (AHSW) or general censoring-free incidence rate (CFIR) proposed by Uno and Horiguchi (2023) <doi:10.1002/sim.9651>.

r-spphpr 1.1.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spphpr
Licenses: GPL 2+
Build system: r
Synopsis: Spring Phenological Prediction
Description:

Predicts the occurrence times (in day-of-year) of spring phenological events. Three methods, including the accumulated degree days (ADD) method, the accumulated days transferred to a standardized temperature (ADTS) method, and the accumulated developmental progress (ADP) method, were used. See Shi et al. (2017a) <doi:10.1016/j.agrformet.2017.04.001> and Shi et al. (2017b) <doi:10.1093/aesa/sax063> for details.

r-sensiat 0.3.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-survival@3.8-3 r-rlang@1.1.6 r-rcpp@1.1.0 r-purrr@1.2.0 r-pracma@2.4.6 r-orthogonalsplinebasis@0.1.7 r-mave@1.3.12 r-mass@7.3-65 r-kernsmooth@2.23-26 r-glue@1.8.0 r-ggplot2@4.0.1 r-generics@0.1.4 r-dplyr@1.1.4 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/UofUEpiBio/SensIAT
Licenses: Expat
Build system: r
Synopsis: Sensitivity Analysis for Irregular Assessment Times
Description:

Sensitivity analysis for trials with irregular and informative assessment times, based on a new influence function-based, augmented inverse intensity-weighted estimator.

Page: 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887
Total results: 21283