_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-stampp 1.6.3
Propagated dependencies: r-pegas@1.3 r-foreach@1.5.2 r-doparallel@1.0.17 r-adegenet@2.1.11
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/lpembleton/StAMPP
Licenses: GPL 3
Build system: r
Synopsis: Statistical Analysis of Mixed Ploidy Populations
Description:

Allows users to calculate pairwise Nei's Genetic Distances (Nei 1972), pairwise Fixation Indexes (Fst) (Weir & Cockerham 1984) and also Genomic Relationship matrixes following Yang et al. (2010) in mixed and single ploidy populations. Bootstrapping across loci is implemented during Fst calculation to generate confidence intervals and p-values around pairwise Fst values. StAMPP utilises SNP genotype data of any ploidy level (with the ability to handle missing data) and is coded to utilise multithreading where available to allow efficient analysis of large datasets. StAMPP is able to handle genotype data from genlight objects allowing integration with other packages such adegenet. Please refer to LW Pembleton, NOI Cogan & JW Forster, 2013, Molecular Ecology Resources, 13(5), 946-952. <doi:10.1111/1755-0998.12129> for the appropriate citation and user manual. Thank you in advance.

r-sparsesem 4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sparseSEM
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Elastic Net Penalized Maximum Likelihood for Structural Equation Models with Network GPT Framework
Description:

This package provides elastic net penalized maximum likelihood estimator for structural equation models (SEM). The package implements `lasso` and `elastic net` (l1/l2) penalized SEM and estimates the model parameters with an efficient block coordinate ascent algorithm that maximizes the penalized likelihood of the SEM. Hyperparameters are inferred from cross-validation (CV). A Stability Selection (STS) function is also available to provide accurate causal effect selection. The software achieves high accuracy performance through a `Network Generative Pre-trained Transformer` (Network GPT) Framework with two steps: 1) pre-trains the model to generate a complete (fully connected) graph; and 2) uses the complete graph as the initial state to fit the `elastic net` penalized SEM.

r-simstatespace 1.2.15
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/jeksterslab/simStateSpace
Licenses: GPL 3+
Build system: r
Synopsis: Simulate Data from State Space Models
Description:

This package provides a streamlined and user-friendly framework for simulating data in state space models, particularly when the number of subjects/units (n) exceeds one, a scenario commonly encountered in social and behavioral sciences. This package was designed to generate data for the simulations performed in Pesigan, Russell, and Chow (2025) <doi:10.1037/met0000779>.

r-sitools 1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sitools
Licenses: GPL 3
Build system: r
Synopsis: Format a number to a string with SI prefix
Description:

Format a number (or a list of numbers) to a string (or a list of strings) with SI prefix. Use SI prefixes as constants like (4 * milli)^2.

r-surtvep 1.0.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-tibble@3.3.0 r-rlang@1.1.6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/UM-KevinHe/surtvep
Licenses: GPL 3
Build system: r
Synopsis: Cox Non-Proportional Hazards Model with Time-Varying Coefficients
Description:

Fit Cox non-proportional hazards models with time-varying coefficients. Both unpenalized procedures (Newton and proximal Newton) and penalized procedures (P-splines and smoothing splines) are included using B-spline basis functions for estimating time-varying coefficients. For penalized procedures, cross validations, mAIC, TIC or GIC are implemented to select tuning parameters. Utilities for carrying out post-estimation visualization, summarization, point-wise confidence interval and hypothesis testing are also provided. For more information, see Wu et al. (2022) <doi: 10.1007/s10985-021-09544-2> and Luo et al. (2023) <doi:10.1177/09622802231181471>.

r-sphericalcubature 1.5
Propagated dependencies: r-simplicialcubature@1.3 r-mvmesh@1.6 r-cubature@2.1.4-1 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SphericalCubature
Licenses: GPL 2+
Build system: r
Synopsis: Numerical Integration over Spheres and Balls in n-Dimensions; Multivariate Polar Coordinates
Description:

This package provides several methods to integrate functions over the unit sphere and ball in n-dimensional Euclidean space. Routines for converting to/from multivariate polar/spherical coordinates are also provided.

r-slemi 1.0.2
Propagated dependencies: r-stringr@1.6.0 r-reshape2@1.4.5 r-nnet@7.3-20 r-hmisc@5.2-4 r-gridextra@2.3 r-ggplot2@4.0.1 r-foreach@1.5.2 r-e1071@1.7-16 r-doparallel@1.0.17 r-corrplot@0.95 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/TJetka/SLEMI
Licenses: GPL 3+
Build system: r
Synopsis: Statistical Learning Based Estimation of Mutual Information
Description:

The implementation of the algorithm for estimation of mutual information and channel capacity from experimental data by classification procedures (logistic regression). Technically, it allows to estimate information-theoretic measures between finite-state input and multivariate, continuous output. Method described in Jetka et al. (2019) <doi:10.1371/journal.pcbi.1007132>.

r-sirthresholded 1.0.2
Propagated dependencies: r-strucchange@1.5-4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://clement-w.github.io/SIRthresholded/
Licenses: GPL 2+
Build system: r
Synopsis: Sliced Inverse Regression with Thresholding
Description:

This package implements a thresholded version of the Sliced Inverse Regression method (Li, K. C. (1991) <doi:10.2307/2290563>), which allows to do variable selection.

r-siberg 2.0.4
Propagated dependencies: r-mclust@6.1.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://oompa.r-forge.r-project.org/
Licenses: ASL 2.0
Build system: r
Synopsis: Systematic Identification of Bimodally Expressed Genes Using RNAseq Data
Description:

This package provides models to identify bimodally expressed genes from RNAseq data based on the Bimodality Index. SIBERG models the RNAseq data in the finite mixture modeling framework and incorporates mechanisms for dealing with RNAseq normalization. Three types of mixture models are implemented, namely, the mixture of log normal, negative binomial, or generalized Poisson distribution. See Tong et al. (2013) <doi:10.1093/bioinformatics/bts713>.

r-shutterplot 0.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=shutterplot
Licenses: GPL 3
Build system: r
Synopsis: The R Shutter Plot Package
Description:

Shows the scatter plot along with the fitted regression lines. It depicts min, max, the three quartiles, mean, and sd for each variable. It also depicts sd-line, sd-box, r, r-square, prediction boundaries, and regression outliers.

r-shinybusy 0.3.3
Propagated dependencies: r-shiny@1.11.1 r-jsonlite@2.0.0 r-htmlwidgets@1.6.4 r-htmltools@0.5.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/dreamRs/shinybusy
Licenses: GPL 3
Build system: r
Synopsis: Busy Indicators and Notifications for 'Shiny' Applications
Description:

Add indicators (spinner, progress bar, gif) in your shiny applications to show the user that the server is busy. And other tools to let your users know something is happening (send notifications, reports, ...).

r-sdprisk 1.1-6
Propagated dependencies: r-rootsolve@1.8.2.4 r-polynomf@2.0-8 r-numderiv@2016.8-1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sdprisk
Licenses: AGPL 3
Build system: r
Synopsis: Measures of Risk for the Compound Poisson Risk Process with Diffusion
Description:

Based on the compound Poisson risk process that is perturbed by a Brownian motion, saddlepoint approximations to some measures of risk are provided. Various approximation methods for the probability of ruin are also included. Furthermore, exact values of both the risk measures as well as the probability of ruin are available if the individual claims follow a hypo-exponential distribution (i. e., if it can be represented as a sum of independent exponentially distributed random variables with different rate parameters). For more details see Gatto and Baumgartner (2014) <doi:10.1007/s11009-012-9316-5>.

r-spellcheckr 0.1.2
Propagated dependencies: r-stringr@1.6.0 r-dplyr@1.1.4 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spellcheckr
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Correct the Spelling of a Given Word in the English Language
Description:

Corrects the spelling of a given word in English using a modification of Peter Norvig's spell correct algorithm (see <http://norvig.com/spell-correct.html>) which handles up to three edits. The algorithm tries to find the spelling with maximum probability of intended correction out of all possible candidate corrections from the original word.

r-spartaas 1.2.4
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.6.0 r-shinywidgets@0.9.0 r-shinythemes@1.2.0 r-shinyjs@2.1.0 r-shinyjqui@0.4.1 r-shinydashboard@0.7.3 r-shinycssloaders@1.1.0 r-shiny@1.11.1 r-scatterd3@1.0.1 r-scales@1.4.0 r-rstudioapi@0.17.1 r-plotly@4.11.0 r-nor1mix@1.3-3 r-mass@7.3-65 r-lmtest@0.9-40 r-leaflet@2.2.3 r-ks@1.15.1 r-htmlwidgets@1.6.4 r-htmltools@0.5.8.1 r-ggplot2@4.0.1 r-ggdendro@0.2.0 r-fpc@2.2-13 r-foreign@0.8-90 r-fastcluster@1.3.0 r-factominer@2.12 r-explor@0.3.10 r-dplyr@1.1.4 r-colorspace@2.1-2 r-cluster@2.1.8.1 r-ape@5.8-1 r-ade4@1.7-23
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://spartaas.gitpages.huma-num.fr/r-package/
Licenses: GPL 2+
Build system: r
Synopsis: Statistical Pattern Recognition and daTing using Archaeological Artefacts assemblageS
Description:

Statistical pattern recognition and dating using archaeological artefacts assemblages. Package of statistical tools for archaeology. hclustcompro()/perioclust(): Bellanger Lise, Coulon Arthur, Husi Philippe (2021, ISBN:978-3-030-60103-4). mapclust(): Bellanger Lise, Coulon Arthur, Husi Philippe (2021) <doi:10.1016/j.jas.2021.105431>. seriograph(): Desachy Bruno (2004) <doi:10.3406/pica.2004.2396>. cerardat(): Bellanger Lise, Husi Philippe (2012) <doi:10.1016/j.jas.2011.06.031>.

r-soilfoodwebs 1.0.2
Propagated dependencies: r-stringr@1.6.0 r-rootsolve@1.8.2.4 r-quadprog@1.5-8 r-lpsolve@5.6.23 r-diagram@1.6.5 r-desolve@1.40
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=soilfoodwebs
Licenses: GPL 3
Build system: r
Synopsis: Soil Food Web Analysis
Description:

Analyzing soil food webs or any food web measured at equilibrium. The package calculates carbon and nitrogen fluxes and stability properties using methods described by Hunt et al. (1987) <doi:10.1007/BF00260580>, de Ruiter et al. (1995) <doi:10.1126/science.269.5228.1257>, Holtkamp et al. (2011) <doi:10.1016/j.soilbio.2010.10.004>, and Buchkowski and Lindo (2021) <doi:10.1111/1365-2435.13706>. The package can also manipulate the structure of the food web as well as simulate food webs away from equilibrium and run decomposition experiments.

r-sparktex 0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://thomasleeper.com/software.html
Licenses: GPL 2
Build system: r
Synopsis: Generate LaTeX sparklines in R
Description:

Generate syntax for use with the sparklines package for LaTeX.

r-suggests 0.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/owenjonesuob/suggests
Licenses: Expat
Build system: r
Synopsis: Declare when Suggested Packages are Needed
Description:

By adding dependencies to the "Suggests" field of a package's DESCRIPTION file, and then declaring that they are needed within any dependent functionality, it is often possible to significantly reduce the number of "hard" dependencies required by a package. This package provides a minimal way to declare when a suggested package is needed.

r-symsem 0.4
Dependencies: python@3.11.14
Propagated dependencies: r-openmx@2.22.10 r-metasem@1.5.0 r-caracas@2.1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/mikewlcheung/symsem
Licenses: GPL 2+
Build system: r
Synopsis: Symbolic Computation for Structural Equation Models
Description:

This package provides a collection of functions for symbolic computation using the caracas package for structural equation models and other statistical analyses. Among its features is the ability to calculate the model-implied covariance (and correlation) matrix and the sampling covariance matrix of variable functions using the delta method.

r-sjtable2df 0.0.5
Propagated dependencies: r-xml2@1.5.0 r-rvest@1.0.5 r-rlang@1.1.6 r-kableextra@1.4.0 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/kapsner/sjtable2df
Licenses: GPL 3+
Build system: r
Synopsis: Convert 'sjPlot' HTML-Tables to R 'data.frame'
Description:

This package provides a small set of helper functions to convert sjPlot HTML-tables to R data.frame objects / knitr::kable-tables.

r-sparseeigen 0.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/dppalomar/sparseEigen
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Computation of Sparse Eigenvectors of a Matrix
Description:

Computation of sparse eigenvectors of a matrix (aka sparse PCA) with running time 2-3 orders of magnitude lower than existing methods and better final performance in terms of recovery of sparsity pattern and estimation of numerical values. Can handle covariance matrices as well as data matrices with real or complex-valued entries. Different levels of sparsity can be specified for each individual ordered eigenvector and the method is robust in parameter selection. See vignette for a detailed documentation and comparison, with several illustrative examples. The package is based on the paper: K. Benidis, Y. Sun, P. Babu, and D. P. Palomar (2016). "Orthogonal Sparse PCA and Covariance Estimation via Procrustes Reformulation," IEEE Transactions on Signal Processing <doi:10.1109/TSP.2016.2605073>.

r-spanner 1.0.2
Propagated dependencies: r-terra@1.8-86 r-sfheaders@0.4.5 r-sf@1.0-23 r-rfast@2.1.5.2 r-rcppeigen@0.3.4.0.2 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rann@2.6.2 r-mathjaxr@1.8-0 r-lidr@4.2.3 r-geometry@0.5.2 r-fnn@1.1.4.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-cpprouting@3.2 r-conicfit@1.0.4 r-bh@1.87.0-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/bi0m3trics/spanner
Licenses: GPL 3
Build system: r
Synopsis: Utilities to Support Lidar Applications at the Landscape, Forest, and Tree Scale
Description:

This package implements algorithms for terrestrial, mobile, and airborne lidar processing, tree detection, segmentation, and attribute estimation (Donager et al., 2021) <doi:10.3390/rs13122297>, and a hierarchical patch delineation algorithm PatchMorph (Girvetz & Greco, 2007) <doi:10.1007/s10980-007-9104-8>. Tree detection uses rasterized point cloud metrics (relative neighborhood density and verticality) combined with RANSAC cylinder fitting to locate tree boles and estimate diameter at breast height. Tree segmentation applies graph-theory approaches inspired by Tao et al. (2015) <doi:10.1016/j.isprsjprs.2015.08.007> with cylinder fitting methods from de Conto et al. (2017) <doi:10.1016/j.compag.2017.07.019>. PatchMorph delineates habitat patches across spatial scales using organism-specific thresholds. Built on lidR (Roussel et al., 2020) <doi:10.1016/j.rse.2020.112061>.

r-simtargetcov 1.0.1
Propagated dependencies: r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=simTargetCov
Licenses: GPL 2+
Build system: r
Synopsis: Data Transformation or Simulation with Empirical Covariance Matrix
Description:

Transforms or simulates data with a target empirical covariance matrix supplied by the user. The method to obtain the data with the target empirical covariance matrix is described in Section 5.1 of Christidis, Van Aelst and Zamar (2019) <arXiv:1812.05678>.

r-syncsa 1.3.5
Propagated dependencies: r-vegan@2.7-2 r-rcpparmadillo@15.2.2-1 r-permute@0.9-8 r-fd@1.0-12.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SYNCSA
Licenses: GPL 2
Build system: r
Synopsis: Analysis of Functional and Phylogenetic Patterns in Metacommunities
Description:

Analysis of metacommunities based on functional traits and phylogeny of the community components. The functions that are offered here implement for the R environment methods that have been available in the SYNCSA application written in C++ (by Valerio Pillar, available at <http://ecoqua.ecologia.ufrgs.br/SYNCSA.html>).

r-stringstatic 0.1.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/rossellhayes/stringstatic
Licenses: CC0
Build system: r
Synopsis: Dependency-Free String Operations
Description:

This package provides drop-in replacements for functions from the stringr package, with the same user interface. These functions have no external dependencies and can be copied directly into your package code using the staticimports package.

Page: 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887888889890891892893894895
Total results: 21457