Programmatic interface to access data from the UK Health Security Agency (UKHSA) Data Dashboard API. The package was originally based on the ukcovid19 package by Pouria Hadjibagheri and has been substantially rewritten and extended. For more information on the API, see <https://ukhsa-dashboard.data.gov.uk/access-our-data>.

This package implements functions to derive uncertainty intervals for (i) regression (linear and probit) parameters under missing not at random (non-ignorable missingness) as introduced in Genbäck, M., Stanghellini, E., and de Luna, X. (2015) <doi:10.1007/s00362-014-0610-x> and Genbäck, M., Ng, N., Stanghellini, E., and de Luna, X. (2018) <doi:10.1007/s10433-017-0448-x>. Also includes methods for doubly robust and outcome regression estimators of average causal effects under unobserved confounding as in Genbäck, M. and de Luna, X. (2018) <doi:10.1111/biom.13001>, and for partial correlation analysis following Gorbach, T. and de Luna, X. (2018) <doi:10.1016/j.spl.2018.05.027>.

Construct and plot objective hierarchies and associated value and utility functions. Evaluate the values and utilities and visualize the results as colored objective hierarchies or tables. Visualize uncertainty by plotting median and quantile intervals within the nodes of objective hierarchies. Get numerical results of the evaluations in standard R data types for further processing.

This package provides a diverse collection of U.S. datasets encompassing various fields such as crime, economics, education, finance, energy, healthcare, and more. It serves as a valuable resource for researchers and analysts seeking to perform in-depth analyses and derive insights from U.S.-specific data.

Separate a data frame in two based on key columns. The function unjoin() provides an inside-out version of a nested data frame. This is used to identify duplication and normalize it (in the database sense) by linking two tables with the redundancy removed. This is a basic requirement for detecting topology within spatial structures that has motivated the need for this package as a building block for workflows within more applied projects.

This package provides functions for building customized ready-to-export tables for publication.

This package provides a set of functions to aid in the production of visuals in ggplot2.

The Ultimate Microrray Prediction, Reality and Inference Engine (UMPIRE) is a package to facilitate the simulation of realistic microarray data sets with links to associated outcomes. See Zhang and Coombes (2012) <doi:10.1186/1471-2105-13-S13-S1>. Version 2.0 adds the ability to simulate realistic mixed-typed clinical data.

Clustering and classification inference for high dimension low sample size (HDLSS) data with U-statistics. The package contains implementations of nonparametric statistical tests for sample homogeneity, group separation, clustering, and classification of multivariate data. The methods have high statistical power and are tailored for data in which the dimension L is much larger than sample size n. See Gabriela B. Cybis, Marcio Valk and SÃ lvia RC Lopes (2018) <doi:10.1080/00949655.2017.1374387>, Marcio Valk and Gabriela B. Cybis (2020) <doi:10.1080/10618600.2020.1796398>, Debora Z. Bello, Marcio Valk and Gabriela B. Cybis (2021) <arXiv:2106.09115>.

This package provides a set of general functions that I have used in various projects and other R packages. Miscellaneous operations on data frames, matrices and vectors, ROC and PR statistics.

This is a new version of the userfriendlyscience package, which has grown a bit unwieldy. Therefore, distinct functionalities are being consciously uncoupled into different packages. This package contains the general-purpose tools and utilities (see the behaviorchange package, the rosetta package, and the soon-to-be-released scd package for other functionality), and is the most direct successor of the original userfriendlyscience package. For example, this package contains a number of basic functions to create higher level plots, such as diamond plots, to easily plot sampling distributions, to generate confidence intervals, to plan study sample sizes for confidence intervals, and to do some basic operations such as (dis)attenuate effect size estimates.

An engine for univariate time series forecasting using different regression models in an autoregressive way. The engine provides an uniform interface for applying the different models. Furthermore, it is extensible so that users can easily apply their own regression models to univariate time series forecasting and benefit from all the features of the engine, such as preprocessings or estimation of forecast accuracy.

This package provides a variational mapping approach that reveals and expands future temporal dynamics from folded high-dimensional geometric distance spaces, unfold turns a set of time series into a 4D block of pairwise distances between reframed windows, learns a variational mapper that maps those distances to the next reframed window, and produces horizon-wise predictive functions for each input series. In short: it unfolds the future path of each series from a folded geometric distance representation.

Quickly create, run, and report structural equation models, and twin models. See ?umx for help, and umx_open_CRAN_page("umx") for NEWS. Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R. Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.

This package provides researchers with a simple set of diagnostic tools for monitoring the progress and reliability of raters conducting content coding tasks. Goehring (2024) <https://bengoehring.github.io/improving-content-analysis-tools-for-working-with-undergraduate-research-assistants.pdf> argues that supervisors---especially supervisors of small teams---should utilize computational tools to monitor reliability in real time. As such, this package provides easy-to-use functions for calculating inter-rater reliability statistics and measuring the reliability of one coder compared to the rest of the team.

Format text (bold, italic, ...) and numbers using UTF-8. Offers functions to search for emojis and include them in your text.

Concise TAP <http://testanything.org/> compliant unit testing package. Authored tests can be run using CMD check with minimal implementation overhead.

Basic statistical analyses. The package has been developed to be used in statistics courses at Bocconi University (Milan, Italy). Currently, the package includes some exploratory and inferential analyses usually presented in introductory statistics courses.

Fit Bayesian hierarchical models of animal abundance and occurrence via the rstan package, the R interface to the Stan C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.

Testing whether two discrete variables have a functional relationship under null distributions where the two variables are statistically independent with fixed marginal counts. The fast enumeration algorithm was based on (Nguyen et al. 2020) <doi:10.24963/ijcai.2020/372>.

This package provides an overview of the demand for natural gas in the US by state and country level. Data source: US Energy Information Administration <https://www.eia.gov/>.

This package provides a container for data used by the usmap package. The data used by usmap has been extracted into this package so that the file size of the usmap package can be reduced greatly. The data in this package will be updated roughly once per year as new map data files are provided by the US Census Bureau.

This package provides functions for uniform sampling of the environmental space, designed to assist species distribution modellers in gathering ecologically relevant pseudo-absence data. The method ensures balanced representation of environmental conditions and helps reduce sampling bias in model calibration. Based on the framework described by Da Re et al. (2023) <doi:10.1111/2041-210X.14209>.

Fast flattening of hierarchical data structures (e.g. JSON, XML) into data.frames with a flexible spec language.