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This package provides a WebSocket client interface for R. WebSocket is a protocol for low-overhead real-time communication: <https://en.wikipedia.org/wiki/WebSocket>.
Wrap-around Time Series (WATS) plots for interrupted time series designs with seasonal patterns. Longitudinal trajectories are shown in both Cartesian and polar coordinates. In many scenarios, a WATS plot more clearly shows the existence and effect size of of an intervention. This package accompanies "Graphical Data Analysis on the Circle: Wrap-Around Time Series Plots for (Interrupted) Time Series Designs" by Rodgers, Beasley, & Schuelke (2014) <doi:10.1080/00273171.2014.946589>; see citation("Wats") for details.
Dynamic interaction refers to spatial-temporal associations in the movements of two (or more) animals. This package provides tools for calculating a suite of indices used for quantifying dynamic interaction with wildlife telemetry data. For more information on each of the methods employed see the references within. The package (as of version >= 0.3) also has new tools for automating contact analysis in large tracking datasets. The package (as of version 1.0) uses the move2 class of objects for working with tracking dataset.
Download and plot education specific demographic data from the Wittgenstein Centre for Demography and Human Capital Data Explorer <https://dataexplorer.wittgensteincentre.org/>.
This estimates precise weaning ages for a given skeletal population by analyzing the stable nitrogen isotope ratios of them. Bone collagen turnover rates estimated anew and the approximate Bayesian computation (ABC) were adopted in this package.
The main functionalities of wrappedtools are: adding backticks to variable names; rounding to desired precision with special case for p-values; selecting columns based on pattern and storing their position, name, and backticked name; computing and formatting of descriptive statistics (e.g. mean±SD), comparing groups and creating publication-ready tables with descriptive statistics and p-values; creating specialized plots for correlation matrices. Functions were mainly written for my own daily work or teaching, but may be of use to others as well.
Read Quake assets including bitmap images and textures in wal file format. This package also provides support for extracting these assets from WAD and PAK file archives. It can also read models in MDL and MD2 formats.
This package provides functions for calculating the fetch (length of open water distance along given directions) and estimating wave energy from wind and wave monitoring data.
This package provides the functions to perform a Welch's one-way Anova with fixed effects based on summary statistics (sample size, means, standard deviation) and the Games-Howell post hoc test for multiple comparisons and provides the effect size estimator adjusted omega squared. In addition sample size estimation can be computed based on Levy's method, and a Monte Carlo simulation is included to bootstrap residual normality and homoscedasticity Welch, B. L. (1951) <doi:10.1093/biomet/38.3-4.330> Kirk, R. E. (1996) <doi:10.1177/0013164496056005002> Carroll, R. M., & Nordholm, L. A. (1975) <doi:10.1177/001316447503500304> Albers, C., & Lakens, D. (2018) <doi:10.1016/j.jesp.2017.09.004> Games, P. A., & Howell, J. F. (1976) <doi:10.2307/1164979> Levy, K. J. (1978a) <doi:10.1080/00949657808810246> Show-Li, J., & Gwowen, S. (2014) <doi:10.1111/bmsp.12006>.
This package provides functions for analysing Water-Energy-Food-Nutrient-Carbon (WEFNC) nexus interactions in agricultural production systems. Includes functions for computing water use efficiency (WUE), water productivity (WP), and water footprint (WF) including green, blue, and grey components following the methodology of Hoekstra et al. (2011, ISBN:9781849712798). Includes energy budgeting tools for energy use efficiency (EUE), energy return on investment (EROI), net energy (NE), and energy productivity (EP). Computes nutrient use efficiency (NUE) metrics including agronomic efficiency (AE), physiological efficiency (PE), recovery efficiency (RE), and partial factor productivity (PFP) as defined by Dobermann (2007) <https://digitalcommons.unl.edu/agronomyfacpub/316/> and Congreves et al. (2021) <doi:10.3389/fpls.2021.637108>. Estimates carbon footprint (CF), greenhouse gas (GHG) emissions, soil organic carbon (SOC) stocks, and global warming potential (GWP) using Intergovernmental Panel on Climate Change (IPCC) Sixth Assessment Report (AR6) default values (CH4 = 27, N2O = 273) as reported in Forster et al. (2021) <doi:10.1017/9781009157896.009>. Computes composite Water-Energy-Food-Nutrient-Carbon (WEFNC) nexus indices, trade-off correlation matrices, and generates radar and heatmap visualizations for comparing agricultural treatments. Supports conservation agriculture (CA), irrigated and rain-fed systems, and arid and semi-arid production environments. Methods follow Lal (2004) <doi:10.1016/j.envint.2004.03.005> for carbon emissions from farm operations, and Hoover et al. (2023) <doi:10.1016/j.scitotenv.2022.160992> for water use efficiency indicators.
This package provides functions to create factor variables with contrasts based on weighted effect coding, and their interactions. In weighted effect coding the estimates from a first order regression model show the deviations per group from the sample mean. This is especially useful when a researcher has no directional hypotheses and uses a sample from a population in which the number of observation per group is different.
This package contains inferential and graphical routines for multi-group analysis of while-alive loss (or event) rate for possibly recurrent nonfatal event in the presence of death.
Generate data frames from templates.
R is used by a vast array of people for a vast array of purposes - including web analytics. This package contains functions for consuming and munging various common forms of request log, including the Common and Combined Web Log formats and various Amazon access logs.
This package provides a client for the WebDriver API'. It allows driving a (probably headless) web browser, and can be used to test web applications, including Shiny apps. In theory it works with any WebDriver implementation, but it was only tested with PhantomJS'.
Scrape lake metadata tables from Wikipedia <https://www.wikipedia.org/>.
Calculate magnetic field at a given location and time according to the World Magnetic Model (WMM). Both the main field and secular variation components are returned. This functionality is useful for physicists and geophysicists who need orthogonal components from WMM. Currently, this package supports annualized time inputs between 2000 and 2025. If desired, users can specify which WMM version to use, e.g., the original WMM2015 release or the recent out-of-cycle WMM2015 release. Methods used to implement WMM, including the Gauss coefficients for each release, are described in the following publications: Chulliat et al (2020) <doi:10.25923/ytk1-yx35>, Chulliat et al (2019) <doi:10.25921/xhr3-0t19>, Chulliat et al (2015) <doi:10.7289/V5TB14V7>, Maus et al (2010) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/WMM2010_Report.pdf>, McLean et al (2004) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/TRWMM_2005.pdf>, and Macmillian et al (2000) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/wmm2000.pdf>.
Additional options for making graphics in the context of analyzing high-throughput data are available here. This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots, automatic checking for optimal location of legends in plots, small histograms to insert as legends, histograms re-transforming axis labels to linear when plotting log2-transformed data, a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats, principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples, generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>, staggered count plots and generation of mouse-over interactive html pages.
Inferences about counterfactuals are essential for prediction, answering what if questions, and estimating causal effects. However, when the counterfactuals posed are too far from the data at hand, conclusions drawn from well-specified statistical analyses become based largely on speculation hidden in convenient modeling assumptions that few would be willing to defend. Unfortunately, standard statistical approaches assume the veracity of the model rather than revealing the degree of model-dependence, which makes this problem hard to detect. WhatIf offers easy-to-apply methods to evaluate counterfactuals that do not require sensitivity testing over specified classes of models. If an analysis fails the tests offered here, then we know that substantive inferences will be sensitive to at least some modeling choices that are not based on empirical evidence, no matter what method of inference one chooses to use. WhatIf implements the methods for evaluating counterfactuals discussed in Gary King and Langche Zeng, 2006, "The Dangers of Extreme Counterfactuals," Political Analysis 14 (2) <DOI:10.1093/pan/mpj004>; and Gary King and Langche Zeng, 2007, "When Can History Be Our Guide? The Pitfalls of Counterfactual Inference," International Studies Quarterly 51 (March) <DOI:10.1111/j.1468-2478.2007.00445.x>.
This package provides data from the United Nation's World Population Prospects 2019.
Assortativity coefficients, centrality measures, and clustering coefficients for weighted and directed networks. Rewiring unweighted networks with given assortativity coefficients. Generating general preferential attachment networks.
Evaluation of alternatives based on multiple criteria using weighted technique for Order preference by similarity to an ideal solution method. Reference: Hwang CL. (1981, ISBN:978-3-540-10558-9).
Generate continuous maps of genetic diversity using moving windows with options for rarefaction, interpolation, and masking as described in Bishop et al. (2023) <doi:10.1111/2041-210X.14090>.
This package performs an analysis of time-to-event clinical trial data using various "win time" methods, including ewt', ewtr', rmt', ewtp', rewtp', ewtpr', rewtpr', max', wtr', rwtr', pwt', and rpwt'. These methods are used to calculate and compare treatment effects on ordered composite endpoints. The package handles event times, event indicators, and treatment arm indicators and supports calculations on observed and resampled data. Detailed explanations of each method and usage examples are provided in "Use of win time for ordered composite endpoints in clinical trials," by Troendle et al. (2024)<https://pubmed.ncbi.nlm.nih.gov/38417455/>. For more information, see the package documentation or the vignette titled "Introduction to wintime.".