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Converts between JSON text and ordinary R vectors and lists through a small, predictable set of functions, backed by vendored yyjson <https://github.com/ibireme/yyjson> and requiring no system JSON library. Parsing accepts character, raw and file input and reports failures through structured conditions; serialization writes UTF-8 bytes suitable for use directly as an HTTP request body. The type mapping is deliberately narrow and fully documented, so what goes in and what comes out are both predictable.
This package contains the US Census Bureau's 2020 ZCTA to County Relationship File, as well as convenience functions to translate between States, Counties and ZIP Code Tabulation Areas (ZCTAs).
Simulation, exploratory data analysis and Bayesian analysis of the p-order Integer-valued Autoregressive (INAR(p)) and Zero-inflated p-order Integer-valued Autoregressive (ZINAR(p)) processes, as described in Garay et al. (2020) <doi:10.1080/00949655.2020.1754819>.
This package implements a grid search algorithm with an adaptive zooming strategy for global optimisation problems with multiple local optima. The method recursively refines the search region around promising grid points, providing reliable initial values for subsequent optimisation procedures. The algorithm is computationally efficient in moderate- to high-dimensional settings.
This package provides a collection of utility functions that facilitate looking up vector values from a lookup table, annotate values in a table for clearer viewing, and support a safer approach to vector sampling, sequence generation, and aggregation. Also included is a family of argument checks which return their input so that they compose nicely in a pipe.
Permutations tests to identify factor correlated to zero-inflated proportions response. Provide a performance indicator based on Spearman correlation to quantify the part of correlation explained by the selected set of factors. See details for the method at the following preprint e.g.: <https://hal.archives-ouvertes.fr/hal-02936779v3>.
Downloads environmental sensor data from the ZENTRA Cloud V5 API (<https://api.zentracloud.io>) into tidy data frames. Provides device discovery, reading retrieval with automatic pagination and rate-limit handling, tidy long output with a wide-format helper, and an incremental sync engine with pluggable local storage (RDS files, CSV files, or return-only) so that new readings can be fetched on a schedule and appended to a growing local record.
Uses bootstrap to test zero order correlation being equal to a partial or semi-partial correlation (one or two tailed). Confidence intervals for the parameter (zero order minus partial) can also be determined. Implements the bias-corrected and accelerated bootstrap method as described in "An Introduction to the Bootstrap" Efron (1983) <0-412-04231-2>.
This package provides quantitative tools for assessing zoonotic disease risk across animal, human, environmental, and transmission interfaces. The package supports exposure and transmission risk estimation, spillover risk assessment, risk scoring, cross-species comparison, transmission-network analysis, Monte Carlo uncertainty simulation, and sensitivity analysis. The One Health framework underlying these assessments is described by World Health Organization, Food and Agriculture Organization of the United Nations, United Nations Environment Programme, and World Organisation for Animal Health (2022) <doi:10.4060/cc2289en>.
This package provides a structured framework for consistent user communication and configuration management for package developers.
An implementation of z-curves - a method for estimating expected discovery and replicability rates on the bases of test-statistics of published studies. The package provides functions for fitting the density, EM, and censored EM version (Bartoš & Schimmack, 2022, <doi:10.15626/MP.2021.2720>; Schimmack & Bartoš, 2023, <doi: 10.1371/journal.pone.0290084>), as well as the original density z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>). Furthermore, the package provides summarizing and plotting functions for the fitted z-curve objects. See the aforementioned articles for more information about the z-curves, expected discovery and replicability rates, validation studies, and limitations.
This package provides functions to compute compositional turnover using zeta-diversity, the number of species shared by multiple assemblages. The package includes functions to compute zeta-diversity for a specific number of assemblages and to compute zeta-diversity for a range of numbers of assemblages. It also includes functions to explain how zeta-diversity varies with distance and with differences in environmental variables between assemblages, using generalised linear models, linear models with negative constraints, generalised additive models,shape constrained additive models, and I-splines.
Implementation of new statistical distributions in (0, 1) interval. Each distribution includes the traditional functions as well as an additional function called the family function, which can be used to estimate parameters using Generalized Additive Models for Location, Scale and Shape, GAMLSS by Rigby & Stasinopoulos (2005) <doi:10.1111/j.1467-9876.2005.00510.x>.
This package implements zero-modified versions of the Complex Tri-Parametric Pearson distribution for overdispersed count data. The package addresses limitations of existing implementations when the parameter b approaches zero. It provides distribution functions, maximum likelihood estimation, and diagnostic tools for modeling count data with excess zeros. The methodology is based on Rodriguez-Avi and coauthors (2003) <doi:10.1007/s00362-002-0134-7>.
Facilitates making a connection to the Zoom API and executing various queries. You can use it to get data on Zoom webinars and Zoom meetings. The Zoom documentation is available at <https://developers.zoom.us/docs/api/>. This package is not supported by Zoom (owner of the software).
Improve the usage of model fitting functions within a piped work flow.
This function produces empirical best linier unbiased predictions (EBLUPs) for Zero-Inflated data and its Relative Standard Error. Small Area Estimation with Zero-Inflated Model (SAE-ZIP) is a model developed for Zero-Inflated data that can lead us to overdispersion situation. To handle this kind of situation, this model is created. The model in this package is based on Small Area Estimation with Zero-Inflated Poisson model proposed by Dian Christien Arisona (2018)<https://repository.ipb.ac.id/handle/123456789/92308>. For the data sample itself, we use combination method between Roberto Benavent and Domingo Morales (2015)<doi:10.1016/j.csda.2015.07.013> and Sabine Krieg, Harm Jan Boonstra and Marc Smeets (2016)<doi:10.1515/jos-2016-0051>.
Fits Bayesian zero-inflated negative binomial regression models with Gaussian process random effects for spatial, temporal, or spatiotemporal count data. Provides Markov chain Monte Carlo sampling, configurable random effects in the zero-inflation and count components, and posterior predictive draws. Implements a full GP version of the methods described by He and Huang (2024) <doi:10.1016/j.jspi.2023.106098>.
Estimation methods for zero-inflated Poisson factor analysis (ZIPFA) on sparse data. It provides estimates of coefficients in a new type of zero-inflated regression. It provides a cross-validation method to determine the potential rank of the data in the ZIPFA and conducts zero-inflated Poisson factor analysis based on the determined rank.
Converts between YAML 1.2 (<https://yaml.org/spec/1.2.2/>) and ordinary R objects using a bundled copy of the cyaml C11 parser and emitter (<https://github.com/andrewmd5/cyaml>), so there is no system dependency and no runtime dependency beyond R itself. Ambiguous YAML features are handled strictly and predictably: duplicate keys are refused by default, the YAML 1.2 core schema is followed so that yes and no resolve as strings, and integers beyond double precision are preserved rather than silently rounded. A stream of documents and a sequence are different things, and the interface keeps them apart. Input size, nesting depth and the number of values materialised are all bounded, which makes the parser usable on untrusted input.
Implementation of four extensions of the Zipf distribution: the Marshall-Olkin Extended Zipf (MOEZipf) Pérez-Casany, M., & Casellas, A. (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the Zipf-Poisson Stopped Sum (Zipf-PSS) and the Zipf-Polylog distributions. In log-log scale, the two first extensions allow for top-concavity and top-convexity while the third one only allows for top-concavity. All the extensions maintain the linearity associated with the Zipf model in the tail.
Access, download and locally cache files deposited on Zenodo <https://zenodo.org>.
Connects R to Zotero through the Better BibTeX for Zotero connector <https://retorque.re/zotero-better-bibtex/>. Provides functions to insert in-text citations and bibliography entries directly into documents, detect citations already present in R Markdown and Quarto files, and synchronise bibliography files. Includes an RStudio addin for interactive use.
This package provides an R wrapper for the Zendesk API.