GUIX package for the SZ3 compressor.

zfp is a compressed number format for multi-dimensional arrays. zfp provides compressed-array classes (e.g., for in-memory storage) and high-speed, parallel data compression (e.g., for offline storage). zfp supports both lossy and lossless compression and fine-grained user control over accuracy and storage size.

FTI stands for Fault Tolerance Interface and is a library that aims to give computational scientists the means to perform fast and efficient multilevel checkpointing in large scale supercomputers.

GUIX package for the SZ compressor.

This package has been developed for computing exact distances, without heuristics, between all pairs of reads of a NGS sample. This is a first step for supervised or unsupervised clustering of reads in an environmental sample.

A set of libraries based on Qt5 for modular scientific software development

FxT is a fast tracing engine that can be used either in user land, in kernel land, or both. It can record developer-specified events in compact "traces", with minimal run-time overhead.

OTF2-compatible interface to write and read trace data from HPC applications.

EZTrace is a tool that aims at generating automatically execution trace from high performance computing (HPC) programs. It generates execution trace files that can be interpreted by visualization tools such as ViTE.

This project aims at providing an alternative solution to the already existing FxT library, which is used to record events during the execution of scientific applications, that would deliver nearly the same performance and would solve the scalability issues such as scalability and the number of threads.

The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. PCRE has its own native API, as well as a set of wrapper functions that correspond to the POSIX regular expression API.

LLVM is a compiler infrastructure designed for compile-time, link-time, runtime, and idle-time optimization of programs from arbitrary programming languages. It currently supports compilation of C and C++ programs, using front-ends derived from GCC 4.0.1. A new front-end for the C family of languages is in development. The compiler infrastructure includes mirror sets of programming tools as well as libraries with equivalent functionality.

Julia is a high-level, high-performance dynamic programming language for technical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library.

Novel approach to building reusable and extensible compiler infrastructure. MLIR aims to address software fragmentation, improve compilation for heterogeneous hardware, significantly reduce the cost of building domain specific compilers, and aid in connecting existing compilers together.

Ground-up implementation of a Fortran front end written in modern C++. While it is capable of generating executables for a number of examples, some functionalities are still missing.

QtDCM implements several Qt widgets for manipulating Dicom data. With QtDCM, it is possible to explore a Dicom CD-ROM, to search and download from a PACS (Pictures Archive and Communications System) and to convert series of images to the nifti format. Thanks to its simple design, QtDcm is very easy to integrate in other application (see the example directory in the code).

The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics, image processing and visualization. It supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. VTK has an extensive information visualization framework, has a suite of 3D interaction widgets, supports parallel processing, and integrates with various databases on GUI toolkits such as Qt and Tk.

The RPI is a lightweight framework to encapsulate image registration algorithms.

The Insight Toolkit (ITK) is a toolkit for N-dimensional scientific image processing, segmentation, and registration. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both.

medInria is a multi-platform medical image processing and visualization software. medInria offers from standard to cutting-edge processing functionalities for your medical images such as 2D/3D/4D image visualization, image registration, diffusion MR processing and tractography.

TTK

DCMTK is a collection of libraries and applications implementing large parts the DICOM standard. It includes software for examining, constructing and converting DICOM image files, handling offline media, sending and receiving images over a network connection, as well as demonstrative image storage and worklist servers.

PaMPA is a C library for dynamic parallel remeshing and redistribution of unstructured meshes.

SimGrid is a scientific instrument to study the behavior of large-scale distributed systems such as grids, "clouds", HPC, and P2P systems. It can be used to evaluate heuristics, prototype applications or even assess legacy MPI applications.