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Linear algebra package implementing advanced parallel domain decomposition methods.
Assembles fem matrices using an efficient vectorization method.
MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point and collective communications of any picklable Python object as well as optimized communications of Python objects (such as NumPy arrays) that expose a buffer interface.
PaRSEC is a generic framework for architecture aware scheduling and management of micro-tasks on distributed many-core heterogeneous architectures.
Example showing how to use starpu for implementing a distributed gemm in C++.
pmtool aims at performing post-mortem analyses of the behavior of StarPU applications. Provide lower bounds on makespan. Study the performance of different schedulers in a simple context. Limitations: ignore communications for the moment; branch comms attempts to remove this limitation.
Chameleon is a dense linear algebra solver relying on sequential task-based algorithms where sub-tasks of the overall algorithms are submitted to a run-time system. Such a system is a layer between the application and the hardware which handles the scheduling and the effective execution of tasks on the processing units. A run-time system such as StarPU is able to manage automatically data transfers between not shared memory area (CPUs-GPUs, distributed nodes).
PaStiX (Parallel Sparse matriX package) is a scientific library that provides a high performance parallel solver for very large sparse linear systems based on direct methods. Numerical algorithms are implemented in single or double precision (real or complex) using LLt, LDLt and LU with static pivoting (for non symmetric matrices having a symmetric pattern). This solver also provides some low-rank compression methods to reduce the memory footprint and/or the time-to-solution.
This package provides a complete GCC tool chain for Fortran development to be installed in user profiles. This includes gfortran, as well as libc (headers and binaries, plus debugging symbols in the debug output), and binutils.
This package provides a complete GCC tool chain for Fortran development to be installed in user profiles. This includes gfortran, as well as libc (headers and binaries, plus debugging symbols in the debug output), and binutils.
Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output.
GUIX package for the SZ3 compressor.
zfp is a compressed number format for multi-dimensional arrays. zfp provides compressed-array classes (e.g., for in-memory storage) and high-speed, parallel data compression (e.g., for offline storage). zfp supports both lossy and lossless compression and fine-grained user control over accuracy and storage size.
GUIX package for the SZ compressor.
FTI stands for Fault Tolerance Interface and is a library that aims to give computational scientists the means to perform fast and efficient multilevel checkpointing in large scale supercomputers.
This package has been developed for computing exact distances, without heuristics, between all pairs of reads of a NGS sample. This is a first step for supervised or unsupervised clustering of reads in an environmental sample.
ElementaryX: Elementary Emacs configuration coupled with Guix. Minimal dependencies for org-mode latex export (ox-latex). Provides both rubber and latexmk build systems.
Compose-publish is an org-mode configuration for publication.
ElementaryX: Elementary Emacs configuration coupled with Guix. LLM setup.
ElementaryX: Elementary Emacs configuration coupled with Guix. Minimal setup.
ElementaryX: Elementary Emacs configuration coupled with Guix org-mode export (ox) setup.
ElementaryX: Elementary Emacs configuration coupled with Guix Add a default.el startup file.
ElementaryX: Elementary Emacs configuration coupled with Guix Minimal org-mode latex beamer (ox-beamer) setup.
ElementaryX: Elementary Emacs configuration coupled with Guix Full setup.