_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


python-igor2 0.5.12
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/AFM-analysis/igor2
Licenses: LGPL 3
Synopsis: Interface for reading binary IGOR files
Description:

Python parser for Igor Binary Waves (.ibw) and Packed Experiment (.pxp) files written by WaveMetrics' IGOR Pro software.

python-autoreject 0.4.3
Propagated dependencies: python-h5io@0.2.5 python-joblib@1.5.2 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-pymatreader@1.1.0 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: http://autoreject.github.io
Licenses: Modified BSD
Synopsis: Automated rejection and repair of epochs in M/EEG
Description:

This is a library to automatically reject bad trials and repair bad sensors in magneto-/electroencephalography (M/EEG) data.

python-mne-rsa 0.10
Propagated dependencies: python-mne@1.10.2 python-nibabel@5.3.2 python-pyside-6@6.9.2 python-pyvista@0.44.2 python-pyvistaqt@0.11.3 python-scikit-learn@1.7.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-rsa
Licenses: Modified BSD
Synopsis: Representational Similarity Analysis on MEG and EEG data
Description:

This is a Python package for performing representational similarity analysis (RSA) using MNE-Python data structures. The main use-case is to perform RSA using a “searchlight” approach through time and/or a volumetric or surface source space.

python-edfio 0.4.10
Propagated dependencies: python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://edfio.readthedocs.io
Licenses: ASL 2.0
Synopsis: Read and write EDF/EDF+ files
Description:

edfio is a Python package for reading and writing EDF and EDF+C files.

python-neurodsp 2.3.0
Propagated dependencies: python-matplotlib@3.8.2 python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://neurodsp-tools.github.io/neurodsp
Licenses: ASL 2.0
Synopsis: Digital signal processing for neural time series
Description:

Tools to analyze and simulate neural time series, using digital signal processing.

python-picard 0.8
Propagated dependencies: python-numpy@1.26.4 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mind-inria.github.io/picard
Licenses: Modified BSD
Synopsis: Preconditoned ICA for Real Data
Description:

Picard provides Python/Octave/MATLAB code for the preconditionned ICA for real data.

python-neo 0.14.2
Propagated dependencies: python-numpy@1.26.4 python-packaging@25.0 python-quantities@0.16.2
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: http://neo.readthedocs.io
Licenses: Modified BSD
Synopsis: Electrophysiology data in Python
Description:

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats.

python-snirf 0.8.0
Propagated dependencies: python-colorama@0.4.6 python-h5py@3.13.0 python-numpy@1.26.4 python-termcolor@2.5.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/BUNPC/pysnirf2
Licenses: GPL 3
Synopsis: Interface and validator for SNIRF files
Description:

Python library for reading, writing, and validating SNIRF files

meggie 1.10.0
Propagated dependencies: python-appdirs@1.4.4 python-colorama@0.4.6 python-h5io@0.2.5 python-json-logger@2.0.7 python-matplotlib@3.8.2 python-mne@1.10.2 python-mne-qt-browser@0.7.2 python-numpy@1.26.4 python-pandas@2.2.3 python-pyqt@5.15.11 python-scikit-learn@1.7.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://cibr-jyu.github.io/meggie
Licenses: Modified BSD
Synopsis: User-friendly graphical user interface to do M/EEG analysis
Description:

Meggie is an open-source software designed for intuitive MEG and EEG analysis. With its user-friendly graphical interface, Meggie brings the powerful analysis methods of MNE-Python to researchers without requiring programming skills.

mnelab 1.0.5
Propagated dependencies: python-edfio@0.4.10 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-pybv@0.7.6 python-pyside-6@6.9.2 python-pyxdf@1.17.1 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/cbrnr/mnelab
Licenses: Modified BSD
Synopsis: A graphical user interface for MNE
Description:

MNELAB is a GUI for MNE-Python, a Python package for EEG/MEG analysis.

python-mne-icalabel 0.8.1
Propagated dependencies: python-mne@1.10.2 python-numpy@1.26.4 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.0.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-icalabel
Licenses: Modified BSD
Synopsis: Automatic labeling of ICA components from MEG, EEG and iEEG data with MNE
Description:

mne-icalabel is a Python package for labeling independent components that stem from an Independent Component Analysis (ICA).

python-meegkit 0.1.9
Propagated dependencies: python-joblib@1.5.2 python-matplotlib@3.8.2 python-numpy@1.26.4 python-pandas@2.2.3 python-pyriemann@0.9 python-scikit-learn@1.7.0 python-scipy@1.12.0 python-statsmodels@0.14.4 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://nbara.github.io/python-meegkit
Licenses: Modified BSD
Synopsis: M/EEG denoising in Python
Description:

This package provides denoising tools for M/EEG processing in Python.

python-mne-bids 0.17.0
Propagated dependencies: python-mne@1.10.2 python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-bids
Licenses: Modified BSD
Synopsis: Organize MEG, EEG, and iEEG data according to the BIDS specification
Description:

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

python-nwb2bids 0.6.0
Propagated dependencies: python-pandas@2.2.3 python-pydantic@2.10.4 python-pynwb@3.1.2 python-rich-click@1.8.9 python-ruamel.yaml@0.18.14 python-typing-extensions@4.15.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://nwb2bids.readthedocs.io/
Licenses: Expat
Synopsis: Reorganize NWB files into a BIDS directory layout
Description:

nwb2bids reorganizes NWB files into a BIDS directory layout.

Features:

  • Automatically renames NWB files and their directories to conform to BIDS conventions.

  • Extracts relevant metadata from NWB files to populate BIDS sidecar TSV & JSON files.

  • Currently supports BEP32 (micro-electrode electrophysiology) data types, such as extracellular (ecephys) and intracellular (icephys) electrophysiology, as well as associated behavioral events.

python-pycrostates 0.6.1
Propagated dependencies: python-decorator@5.2.1 python-jinja2@3.1.2 python-joblib@1.5.2 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.0.0 python-scikit-learn@1.7.0 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://pycrostates.readthedocs.io
Licenses: Modified BSD
Synopsis: Python package for EEG microstate segmentation
Description:

This package provides a simple open source Python package for EEG microstate segmentation.

python-mne-connectivity 0.7
Propagated dependencies: python-mne@1.10.2 python-netcdf4@1.6.2 python-numpy@1.26.4 python-pandas@2.2.3 python-scipy@1.12.0 python-tqdm@4.67.1 python-xarray@2023.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-connectivity
Licenses: Modified BSD
Synopsis: Connectivity data analysis with MNE
Description:

MNE-Connectivity is an open-source Python package for connectivity and related measures of MEG, EEG, or iEEG data built on top of the MNE-Python API. It includes modules for data input/output, visualization, common connectivity analysis, and post-hoc statistics and processing.

python-pyxdf 1.17.1
Propagated dependencies: python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/xdf-modules/pyxdf
Licenses: FreeBSD
Synopsis: Python library for importing XDF (Extensible Data Format)
Description:

XDF is a general-purpose container format for multi-channel time series data with extensive associated meta information. XDF is tailored towards biosignal data such as EEG, EMG, EOG, ECG, GSR, MEG, but it can also handle data with high sampling rate (like audio) or data with a high number of channels (like fMRI or raw video). Meta information is stored as XML.

python-mne-qt-browser 0.7.2
Propagated dependencies: python-darkdetect@0.8.0 python-matplotlib@3.8.2 python-mne@1.10.2 python-numpy@1.26.4 python-pyopengl@3.1.9 python-pyqtgraph@0.13.7 python-qdarkstyle@3.2.3 python-qtpy@2.4.3 python-scipy@1.12.0 python-scooby@0.5.12
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools
Licenses: Modified BSD
Synopsis: Backend based on pyqtgraph for the 2D-Data-Browser in MNE-Python
Description:

This package provides a new backend based on pyqtgraph for the 2D-Data-Browser in MNE-Python.

python-lspopt 1.4.0
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/hbldh/lspopt
Licenses: Expat
Synopsis: Multitaper window method for estimating Wigner spectra for certain locally stationary processes
Description:

This package provides a Python implementation of a multitaper window method for estimating Wigner spectra for certain locally stationary processes.

python-mne-faster 1.2.2
Propagated dependencies: python-mne@1.10.2 python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/wmvanvliet/mne-faster
Licenses: Modified BSD
Synopsis: Automatic EEG bad channel/epoch/ICA-component detection using FASTER
Description:

FASTER is a fully automated, unsupervised method for processing of high density EEG data.

openmeeg 2.5.15
Dependencies: hdf5@1.14.6 matio@1.5.23 openblas@0.3.30 vtk@9.3.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://openmeeg.github.io
Licenses: CeCILL-B
Synopsis: Forward problems solver in the field of EEG and MEG
Description:

The OpenMEEG software is a C++ package for solving the forward problems of electroencephalography (EEG) and magnetoencephalography (MEG).

device-xlib 0.8.6
Dependencies: openblas@0.3.30
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://gitlab.com/max-centre/components/devicexlib
Licenses: GPL 3+
Synopsis: Fortran library wrapping device-oriented routines and utilities
Description:

deviceXlib is a library that wraps device-oriented routines and utilities, such as device data allocation, host-device data transfers. It supports CUDA language, together with OpenACC and OpenMP programming paradigms. It wraps a subset of functions from Nvidia cuBLAS, Intel oneMKL BLAS and AMD rocBLAS libraries.

device-xlib 0.2.0-1.08558f7
Dependencies: openblas@0.3.30 lapack@3.12.1
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://gitlab.com/max-centre/components/devicexlib
Licenses: GPL 3+
Synopsis: Fortran library wrapping device-oriented routines and utilities
Description:

deviceXlib is a library that wraps device-oriented routines and utilities, such as device data allocation, host-device data transfers. It supports CUDA language, together with OpenACC and OpenMP programming paradigms. It wraps a subset of functions from Nvidia cuBLAS, Intel oneMKL BLAS and AMD rocBLAS libraries.

fortran-fpm 0.12.0
Dependencies: gfortran@14.3.0
Channel: guix-science
Location: guix-science/packages/fortran.scm (guix-science packages fortran)
Home page: https://fpm.fortran-lang.org
Licenses: Expat
Synopsis: Fortran Package Manager
Description:

Fortran Package Manager (fpm) is a package manager and build system for Fortran. Its key goal is to improve the user experience of Fortran programmers. It does so by making it easier to build your Fortran program or library, run the executables, tests, and examples, and distribute it as a dependency to other Fortran projects. Fpm's user interface is modeled after Rust's Cargo, so if you're familiar with that tool, you will feel at home with fpm. Fpm's long term vision is to nurture and grow the ecosystem of modern Fortran applications and libraries.

Total results: 1014