Managing data from large scale projects such as The Cancer Genome Atlas (TCGA) for further analysis is an important and time consuming step for research projects. Several efforts, such as Firehose project, make TCGA pre-processed data publicly available via web services and data portals but it requires managing, downloading and preparing the data for following steps. This package provides an extensible R based data client for Firehose pre-processed data.
Tidygeocoder makes getting data from geocoding services easy. A unified high-level interface is provided for a selection of supported geocoding services and results are returned in tibble format.
This package implements the diffusion map method of data parametrization, including creation and visualization of diffusion maps, clustering with diffusion K-means and regression using the adaptive regression model.
Python implementation of the Happy Eyeballs Algorithm described in RFC 6555. Provided with a single file and dead-simple API to allow easy vendoring and integration into other projects.
The sys-uname library provides an interface for gathering information about your current platform. It allows retrieving information such as the OS name, OS version, system name, etc.
This package includes styles for American Physical Society, American Institute of Physics, and Optical Society of America. The distribution consists of the RevTeX class itself, and several support packages.
This package provides tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.
Playfair, Four-Square, Scytale, Columnar Transposition and Autokey methods. Further explanation on methods of classical cryptography can be found at Wikipedia; (<https://en.wikipedia.org/wiki/Classical_cipher>).
Simple and seamless access to a variety of StatCan shapefiles for mapping Canadian provinces, regions, forward sortation areas, census divisions, and subdivisions using the popular ggplot2 package.
This package provides a GUI to solve dynamic biplots and classical biplot. Try matrices of 2-way and 3-way. The GUI can be run in multiple languages.
Local linear hazard estimator and its multiplicatively bias correction, including three bandwidth selection methods: best one-sided cross-validation, double one-sided cross-validation, and standard cross-validation.
Interface for extra high-dimensional smooth functions for Generalized Additive Models for Location Scale and Shape (GAMLSS) including (adaptive) lasso, ridge, elastic net and least angle regression.
Allows the user to animate text within rmarkdown documents and shiny applications. The animations are activated using the Animate.css library. See <https://animate.style/> for more information.
Assign meaningful labels to data frame columns. labelmachine manages your label assignment rules in yaml files and makes it easy to use the same labels in multiple projects.
Interactive shiny application for working with different kinds of latent variable analysis, with the lavaan package. Graphical output for models are provided and different estimators are supported.
Function to read PX-Web data into R via API. The example code reads data from the three national statistical institutes, Statistics Norway, Statistics Sweden and Statistics Finland.
Based on Alan D. Hutson (1999) <doi:10.1080/02664769922458>, "Calculating nonparametric confidence intervals for quantiles using fractional order statistics", Journal of Applied Statistics, 26:3, 343-353.
The Ziggurat generator for normally distributed random numbers, originally proposed by Marsaglia and Tsang (2000, https://doi.org/10.18637/jss.v005.i08) has been improved upon a few times starting with Leong et al (2005, https://doi.org/10.18637/jss.v012.i07). This package provides an aggregation for comparing different implementations in order to provide a 'faster but good enough' alternative for use with R and C++ code.
This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).
Package Raccoon cleans the "wiggles" (i.e., low-frequency sinusoidal artifacts) in the JWST-NIRSpec IFS (integral field spectroscopy) data. These wiggles are caused by resampling noise or aliasing artifacts.
cl-random is a library for generating random draws from various commonly used distributions, and for calculating statistical functions, such as density, distribution and quantiles for these distributions.
This package is a fork from the retry package, but with some of added community-sourced features. It provides an easy to use, but functional decorator for retrying on exceptions.
Defines the functions used to compute the bimodal index as defined by Wang et al. (2009) <https://pmc.ncbi.nlm.nih.gov/articles/PMC2730180/>, <doi:10.4137/CIN.S2846>.